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1 | VIX_SIV_v3_0_patch_201_build_8.zip\v3.0_patch_201_build_8\VISA\Java\ImagingDicomDCFCommon\src\java\gov\va\med\imaging\dicom\dcftoolkit\common\impl | DicomDataSetImpl.java | Thu Oct 11 13:30:11 2018 UTC |
2 | VIX_SIV_v3_0_patch_201_build_8.zip\v3.0_patch_201_build_8\VISA\Java\ImagingDicomDCFCommon\src\java\gov\va\med\imaging\dicom\dcftoolkit\common\impl | DicomDataSetImpl.java | Wed Oct 17 18:52:29 2018 UTC |
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1 | /** | |
2 | * | |
3 | Package: MAG - Vis tA Imaging | |
4 | WARNING: Per VHA D irective 2 004-038, t his routin e should n ot be modi fied. | |
5 | Date Cre ated: Octo ber 19, 20 05 | |
6 | Site Nam e: Washin gton OI Fi eld Office , Silver S pring, MD | |
7 | Developer:
|
|
8 | Descript ion: | |
9 | ||
10 | ;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- + | |
11 | ;; Property of the US Government . | |
12 | ;; No permis sion to co py or redi stribute t his softwa re is give n. | |
13 | ;; Use of un released v ersions of this soft ware requi res the us er | |
14 | ;; to execu te a writt en test ag reement wi th the Vis tA Imaging | |
15 | ;; Developm ent Office of the De partment o f Veterans Affairs, | |
16 | ;; telephon e (301) 73 4-0100. | |
17 | ;; | |
18 | ;; The Food and Drug A dministrat ion classi fies this software a s | |
19 | ;; a Class I I medical device. A s such, it may not b e changed | |
20 | ;; in any wa y. Modifi cations to this soft ware may r esult in a n | |
21 | ;; adulterat ed medical device un der 21CFR8 20, the us e of which | |
22 | ;; is consid ered to be a violati on of US F ederal Sta tutes. | |
23 | ;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- + | |
24 | */ | |
25 | package go v.va.med.i maging.dic om.dcftool kit.common .impl; | |
26 | ||
27 | import gov .va.med.im aging.Stri ngUtil; | |
28 | import gov .va.med.im aging.dico m.common.i nterfaces. IDicomData Set; | |
29 | import gov .va.med.im aging.dico m.common.i nterfaces. IDicomElem ent; | |
30 | import gov .va.med.im aging.dico m.common.i nterfaces. IIODViolat ionList; | |
31 | import gov .va.med.im aging.dico m.dcftoolk it.common. impl.rdsr. RDSRProces sor; | |
32 | import gov .va.med.im aging.dico m.dcftoolk it.common. mapping.Bu sinessObje ctToDicomS CUTranslat or; | |
33 | import gov .va.med.im aging.dico m.dcftoolk it.common. mapping.Di comToBusin essObjectT ranslator; | |
34 | import gov .va.med.im aging.dico m.dcftoolk it.common. validation .DicomInst anceValida tor; | |
35 | import gov .va.med.im aging.exch ange.busin ess.Imagin gServiceRe quest; | |
36 | import gov .va.med.im aging.exch ange.busin ess.Reques tedProcedu re; | |
37 | import gov .va.med.im aging.exch ange.busin ess.Schedu ledProcedu reStep; | |
38 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomAE; | |
39 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomCorre ctInfo; | |
40 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomMap; | |
41 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomReque stParamete rs; | |
42 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomServe rConfigura tion; | |
43 | import gov .va.med.im aging.exch ange.busin ess.dicom. DicomUtils ; | |
44 | import gov .va.med.im aging.exch ange.busin ess.dicom. InstanceFi le; | |
45 | import gov .va.med.im aging.exch ange.busin ess.dicom. Instrument Config; | |
46 | import gov .va.med.im aging.exch ange.busin ess.dicom. MockDicomM ap; | |
47 | import gov .va.med.im aging.exch ange.busin ess.dicom. PatientRef ; | |
48 | import gov .va.med.im aging.exch ange.busin ess.dicom. PatientStu dyInfo; | |
49 | import gov .va.med.im aging.exch ange.busin ess.dicom. ProcedureR ef; | |
50 | import gov .va.med.im aging.exch ange.busin ess.dicom. SOPInstanc e; | |
51 | import gov .va.med.im aging.exch ange.busin ess.dicom. Series; | |
52 | import gov .va.med.im aging.exch ange.busin ess.dicom. StorageCom mitElement ; | |
53 | import gov .va.med.im aging.exch ange.busin ess.dicom. Study; | |
54 | import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .DicomExce ption; | |
55 | import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .IllegalQu eryDataExc eption; | |
56 | import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .UnknownSO PClassExce ption; | |
57 | import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .ValidateI ODExceptio n; | |
58 | import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .ValidateV RException ; | |
59 | import gov .va.med.im aging.exch ange.busin ess.dicom. rdsr.Dose; | |
60 | ||
61 | import jav a.io.ByteA rrayOutput Stream; | |
62 | import jav a.io.IOExc eption; | |
63 | import jav a.io.Unsup portedEnco dingExcept ion; | |
64 | import jav a.util.Arr ayList; | |
65 | import jav a.util.Has hMap; | |
66 | import jav a.util.Has hSet; | |
67 | import jav a.util.Ite rator; | |
68 | import jav a.util.Lis t; | |
69 | import jav a.util.Vec tor; | |
70 | ||
71 | import jav ax.xml.par sers.Parse rConfigura tionExcept ion; | |
72 | import jav ax.xml.tra nsform.Tra nsformerEx ception; | |
73 | ||
74 | import org .apache.lo gging.log4 j.LogManag er; | |
75 | import org .apache.lo gging.log4 j.Logger; | |
76 | ||
77 | import com .lbs.DCS.A ttributeTa g; | |
78 | import com .lbs.DCS.D CM; | |
79 | import com .lbs.DCS.D CSExceptio n; | |
80 | import com .lbs.DCS.D icomDataDi ctionary; | |
81 | import com .lbs.DCS.D icomDataSe t; | |
82 | import com .lbs.DCS.D icomElemen t; | |
83 | import com .lbs.DCS.D icomFileOu tput; | |
84 | import com .lbs.DCS.D icomSQElem ent; | |
85 | import com .lbs.DCS.D icomSessio nSettings; | |
86 | import com .lbs.DCS.D icomStream Writer; | |
87 | import com .lbs.DCS.U ID; | |
88 | import com .lbs.DCS.V RValidator ; | |
89 | import com .lbs.DCS.V alidationE rror; | |
90 | import com .lbs.DCS.V alidationE rrorList; | |
91 | ||
92 | /** | |
93 | * | |
94 | * TODO To change th e template for this generated type comme nt go to | |
95 | * Window - Preferen ces - Java - Code St yle - Code Templates | |
96 | * | |
97 | * | |
98 | * @author William P eterson | |
99 | * | |
100 | */ | |
101 | public cla ss DicomDa taSetImpl implements IDicomDat aSet { | |
102 | ||
103 | pr ivate stat ic final S tring RADI ATION_DOSE _SOP_CLASS _UID = "1. 2.840.1000 8.5.1.4.1. 1.88.67"; | |
104 | ||
105 | Di comDataSet dataSet; | |
106 | ||
107 | // Business object ref erences | |
108 | Pa tientRef p atientRef = null; | |
109 | Pr ocedureRef procedure Ref = null ; | |
110 | Se ries serie s = null; | |
111 | St udy study = null; | |
112 | SO PInstance sopInstanc e = null; | |
113 | Im agingServi ceRequest imagingSer viceReques t = null; | |
114 | Re questedPro cedure req uestedProc edure = nu ll; | |
115 | Sc heduledPro cedureStep scheduled ProcedureS tep = null ; | |
116 | Di comRequest Parameters serviceRe questParam eters = ne w DicomReq uestParame ters(); | |
117 | Ha shSet<Dico mMap> serv iceMapping Set = new HashSet<Di comMap>(); | |
118 | Ha shSet<Dico mMap> HISM appingSet = null; | |
119 | HashMa p<String, String> HI SChanges = null; | |
120 | String acquisiti onSite; | |
121 | String sourceAET ; | |
122 | String receivedT ransferSyn tax; | |
123 | String name; | |
124 | String affectSOP Class; | |
125 | String transacti onUID; | |
126 | String aETDefaul tServiceTy pe = null; | |
127 | ||
128 | privat e static L ogger logg er = LogMa nager.getL ogger(Dico mDataSetIm pl.class); | |
129 | pr ivate stat ic final D icomServer Configurat ion config = DicomSe rverConfig uration.ge tConfigura tion(); | |
130 | pr ivate stat ic final S tring orig inalAttrib uteSequenc eTag = "04 00,0561"; | |
131 | ||
132 | ||
133 | /* * | |
134 | * Con structor | |
135 | * | |
136 | */ | |
137 | public DicomData SetImpl() { | |
138 | da taSet = ne w DicomDat aSet(); | |
139 | } | |
140 | ||
141 | /** | |
142 | * Con structor | |
143 | * | |
144 | * @pa ram arg0 | |
145 | */ | |
146 | public DicomData SetImpl(Di comDataSet arg0) { | |
147 | da taSet = ar g0; | |
148 | } | |
149 | /* (no n-Javadoc) | |
150 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get DicomDataS et() | |
151 | */ | |
152 | public Object ge tDicomData Set() { | |
153 | // | |
154 | re turn dataS et; | |
155 | } | |
156 | ||
157 | public void setD icomDataSe t(Object d icomDataSe t) { | |
158 | // T ODO Auto-g enerated m ethod stub | |
159 | } | |
160 | ||
161 | /* (non-Java doc) | |
162 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getDi comElement (java.lang .String) | |
163 | * / | |
164 | pu blic IDico mElement g etDicomEle ment(Strin g dicomTag Name) thro ws DicomEx ception { | |
165 | Dico mElementIm pl dicomEl ementImpl = null; | |
166 | ||
167 | try { | |
168 | if (di comTagName == null) // d on't crash , if incom ing tag is null | |
169 | return d icomElemen tImpl; | |
170 | if(dataS et.contain sElement(n ew Attribu teTag(dico mTagName)) ){ | |
171 | Dico mElement e lement = d ataSet.fin dElement(n ew Attribu teTag(dico mTagName)) ; | |
172 | dico mElementIm pl = new D icomElemen tImpl(elem ent); | |
173 | } | |
174 | } | |
175 | catc h (DCSExce ption dcse ) | |
176 | { | |
177 | logger.e rror(dcse. getMessage ()); | |
178 | logger .error(thi s.getClass ().getName ()+ | |
179 | " Could no t retrieve Dicom Ele ment with tag name: " + dicomT agName); | |
180 | throw new DicomE xception(" Failure to retrieve DICOM Elem ent.", dcs e); | |
181 | } | |
182 | retu rn dicomEl ementImpl; | |
183 | } | |
184 | ||
185 | ||
186 | /* (non-Java doc) | |
187 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getDi comElement Value(java .lang.Stri ng, java.l ang.String ) | |
188 | * / | |
189 | pu blic Strin g getDicom ElementVal ue(String dicomTagNa me, String dicomTag2 Name) | |
190 | throws DicomExce ption { | |
191 | Stri ng strval = null; | |
192 | ||
193 | try { | |
194 | if (di comTagName == null) // don't c rash, retu rn null if incoming | |
195 | // tag i s null | |
196 | return s trval; | |
197 | if (di comTag2Nam e == null) // top le vel elemen t | |
198 | strval = dataSet.g etElementS tringValue (new Attri buteTag( | |
199 | di comTagName )); | |
200 | else { // we dea l with a s equence el ement | |
201 | DicomSQE lement sq_ e = (Dicom SQElement) dataSet | |
202 | .f indElement (new Attri buteTag(di comTagName )); | |
203 | if (sq_e != null) { | |
204 | // remove element fr om sequenc e dataset | |
205 | DicomDataS et sq_ds = sq_e.SQ() ; // handl e 1 sequen ce element | |
206 | // only (f or now) | |
207 | strval = s q_ds.getEl ementStrin gValue(new Attribute Tag( | |
208 | dico mTag2Name) ); | |
209 | } | |
210 | } | |
211 | } ca tch (DCSEx ception dc se) { | |
212 | logger .error(dcs e.getMessa ge()); | |
213 | logger .error(thi s.getClass ().getName () | |
214 | + "Could n ot get Dic om Element value of tag name: " | |
215 | + dicomTag Name | |
216 | + ((dicomT ag2Name == null) ? " " : (", " + dicomTa g2Name))); | |
217 | throw new DicomE xception(" Failure to retrieve DICOM Elem ent value. ", dcse); | |
218 | } | |
219 | if ( (strval != null) && (!strval.i sEmpty())) | |
220 | strval = strval. trim(); | |
221 | retu rn strval; | |
222 | } | |
223 | ||
224 | // IMPROVE Ch ange retur n value to void. Co mpile and test to se e if somet hing break s. | |
225 | /* | |
226 | * | |
227 | * / | |
228 | pu blic IDico mElement i nsertDicom Element(St ring dicom TagName, S tring dico mTag2Name, String va lue) throw s DicomExc eption { | |
229 | Di comElement Impl dicom ElementImp l = null; | |
230 | ||
231 | tr y { | |
232 | if ( dicomTagNa me == null ) // don't cra sh, return null if i ncoming ta g is null | |
233 | return dicomElem entImpl; | |
234 | if ( dicomTag2N ame == nul l){ // top level ele ment | |
235 | value = formatStri ngValue(di comTagName , value); | |
236 | dataSe t.insert(n ew Attribu teTag(dico mTagName), value); | |
237 | } | |
238 | else { // we deal with a sequence element | |
239 | DicomS QElement s q_e = null ; | |
240 | if (da taSet.cont ainsElemen t(new Attr ibuteTag(d icomTagNam e))) { | |
241 | sq_e = ( DicomSQEle ment)dataS et.findEle ment(new A ttributeTa g(dicomTag Name)); | |
242 | DicomDat aSet sq_ds = sq_e.SQ (); // han dle 1 sequ ence eleme nt only (f or now) | |
243 | Stri ng nuValue = formatS tringValue (dicomTag2 Name, valu e); | |
244 | sq_ds.in sert(new A ttributeTa g(dicomTag 2Name), nu Value); | |
245 | DicomSQE lement nuS equence = new DicomS QElement(n ew Attribu teTag(dico mTagName), sq_ds); | |
246 | dataSet. insert(nuS equence); | |
247 | } | |
248 | else{ | |
249 | Stri ng nuValue = formatS tringValue (dicomTag2 Name, valu e); | |
250 | DicomDat aSet sq_ds = new Dic omDataSet( ); | |
251 | sq_ds.in sert(new A ttributeTa g(dicomTag 2Name), nu Value); | |
252 | sq_e = n ew DicomSQ Element(ne w Attribut eTag(dicom TagName), sq_ds); | |
253 | dataSet. insert(sq_ e); | |
254 | } | |
255 | } | |
256 | } | |
257 | ca tch (DCSEx ception dc se) | |
258 | { | |
259 | lo gger.error (dcse.getM essage()); | |
260 | logg er.error(t his.getCla ss().getNa me()+ | |
261 | "Cou ld not ins ert Dicom Element wi th tag nam e: " | |
262 | + dicomT agName + ( (dicomTag2 Name==null )?" ":(", " + dicomT ag2Name))) ; | |
263 | thro w new Dico mException ("Failure to insert DICOM Elem ent.", dcs e); | |
264 | } | |
265 | retu rn dicomEl ementImpl; | |
266 | } | |
267 | ||
268 | /* (no n-Javadoc) | |
269 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#rem oveDicomEl ement(java .lang.Stri ng, java.l ang.String ) | |
270 | */ | |
271 | public boolean r emoveDicom Element(St ring dicom TagName, S tring dico mTag2Name) | |
272 | throws D icomExcept ion { | |
273 | bool ean remove d=false; | |
274 | ||
275 | try { | |
276 | if (di comTagName == null) // d on't crash , return n ull if inc oming tag is null | |
277 | return r emoved; | |
278 | if (di comTag2Nam e == null) // top l evel eleme nt | |
279 | removed = dataSet. removeElem ent(new At tributeTag (dicomTagN ame)); | |
280 | else { // we de al with a sequence e lement | |
281 | DicomSQE lement sq_ e = (Dicom SQElement) dataSet.fi ndElement( new Attrib uteTag(dic omTagName) ); | |
282 | if (sq_e !=null) { | |
283 | // remove element fr om sequenc e dataset | |
284 | DicomDataS et sq_ds = sq_e.SQ() ; // handl e 1 sequen ce element only (for now) | |
285 | removed = sq_ds.remo veElement( new Attrib uteTag(dic omTag2Name )); | |
286 | } | |
287 | } | |
288 | } | |
289 | catc h (DCSExce ption dcse ) | |
290 | { | |
291 | logger.e rror(dcse. getMessage ()); | |
292 | logger .error(thi s.getClass ().getName ()+ | |
293 | "Could not remove Di com Elemen t with tag name: " | |
294 | + dicomTag Name + ((d icomTag2Na me==null)? " ":(", " + dicomTag 2Name))); | |
295 | throw new DicomE xception(" Failure to remove DI COM Elemen t.", dcse) ; | |
296 | } | |
297 | retu rn removed ; | |
298 | } | |
299 | ||
300 | /* | |
301 | * (no n-Javadoc) | |
302 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#c ontainsDic omElement( java.lang. String, ja va.lang.St ring) | |
303 | */ | |
304 | pu blic boole an contain sDicomElem ent(String dicomTagN ame, Strin g dicomTag 2Name){ | |
305 | bool ean elemen tExist = f alse; | |
306 | try { | |
307 | if (di comTagName == null){ // d on't crash , return n ull if inc oming tag is null | |
308 | throw ne w DCSExcep tion("Tag is null"); | |
309 | } | |
310 | if(dat aSet.conta insElement (new Attri buteTag(di comTagName ))){ | |
311 | if (dico mTag2Name == null){ // top level ele ment found | |
312 | elementExi st = true; | |
313 | } else { // we deal with a se quence ele ment | |
314 | DicomSQEle ment sq_e = (DicomSQ Element)da taSet.find Element(ne w Attribut eTag(dicom TagName)); | |
315 | if (sq_e== null) // n o sequence element f ound | |
316 | el ementExist = false; | |
317 | else { | |
318 | // remove el ement from sequence dataset | |
319 | Di comDataSet sq_ds = s q_e.SQ(); // handle 1 sequence element o nly (for n ow) | |
320 | el ementExist = sq_ds.c ontainsEle ment(new A ttributeTa g(dicomTag 2Name)); | |
321 | } | |
322 | } | |
323 | } | |
324 | else{ | |
325 | elementE xist = fal se; | |
326 | } | |
327 | } | |
328 | catc h (DCSExce ption dcse ) | |
329 | { | |
330 | logger.e rror(dcse. getMessage ()); | |
331 | logger .error(thi s.getClass ().getName ()+ | |
332 | "Could not determine if Dicom Element ex ist with t ag name(s) : " + dico mTagName + ((dicomTa g2Name==nu ll)?" nul l":dicomTa g2Name)); | |
333 | elemen tExist = f alse; | |
334 | } | |
335 | retu rn element Exist; | |
336 | } | |
337 | ||
338 | /* | |
339 | * (no n-Javadoc) | |
340 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#i nsertAndRe cordNewVal ue(java.la ng.String, java.lang .String, j ava.lang.S tring, jav a.lang.boo lean) | |
341 | */ | |
342 | pu blic boole an insertA ndRecordNe wValue (St ring tag, String tag 2, String value, boo lean ignor eNew) | |
343 | { | |
344 | // c heck if va lue is new | |
345 | Stri ng tagValu e=null; | |
346 | try { | |
347 | if (co ntainsDico mElement(t ag, tag2)) | |
348 | tagValue = getDico mElementVa lue(tag, t ag2); // fetch o ld value | |
349 | else { | |
350 | ignoreNe w = true; // force i nsert of n ew value | |
351 | tagValue = ""; // set old value to empty Stri ng | |
352 | } | |
353 | if (ig noreNew || ((tagValu e != null) && (!tagV alue.equal s(value))) ) { | |
354 | ||
355 | // do in sert old v alue to or iginal seq uence and value to d ataset | |
356 | try { | |
357 | if (tag2== null) { | |
358 | in sertDicomE lement(ori ginalAttri buteSequen ceTag, tag , tagValue ); | |
359 | } | |
360 | else { // sequence tag | |
361 | Di comDataSet dataSet = null; | |
362 | Di comDataSet sq_ds = n ull; // or ig SQ data set | |
363 | da taSet = (D icomDataSe t) getDico mDataSet() ; | |
364 | Di comSQEleme nt origSQ_ e = (Dicom SQElement) dataSet.f indElement (new Attri buteTag(or iginalAttr ibuteSeque nceTag)); | |
365 | if (origSQ_e == null) { // inser t orig SQ with old t ag value i n belly to parent da taset | |
366 | sq_d s = new Di comDataSet (); | |
367 | sq_ds.inse rt(new Att ributeTag( tag), tagV alue); | |
368 | origSQ_e = new Dicom SQElement( new Attrib uteTag(ori ginalAttri buteSequen ceTag), sq _ds); | |
369 | dataSet.in sert(origS Q_e); | |
370 | } | |
371 | el se { // ori g SQ alrea dy exists | |
372 | sq_d s = origSQ _e.SQ(); | |
373 | //FI XME-fix th is dead co de. Not s ure what t o do with the else s tatement. | |
374 | if ( tag2==null ) { // ins ert old el ement to o rig SQ | |
375 | sq_ds. insert(new Attribute Tag(tag), tagValue); | |
376 | } | |
377 | else { // find/ create old SQ in ori g SQ | |
378 | DicomS QElement c hildSQ_e = getChildS equenceEle ment(tag, sq_ds); | |
379 | DicomD ataSet sq_ ds2 = null ; // child SQ datase t | |
380 | if (ch ildSQ_e == null) { / / create c hild SQ wi th old ele ment in be lly and ad d child SQ to orig S Q | |
381 | sq_ds2 = new Dicom DataSet(); | |
382 | sq_d s2.insert( new Attrib uteTag(tag 2), tagVal ue); | |
383 | chil dSQ_e = ne w DicomSQE lement(new Attribute Tag(tag), sq_ds2); | |
384 | sq_d s.insert(c hildSQ_e); | |
385 | } else { // ins ert old SQ element t o orig SQ' s child SQ | |
386 | sq_ds2 = childSQ_e .SQ(); | |
387 | sq_ds2.i nsert(new AttributeT ag(tag2), tagValue); | |
388 | } | |
389 | ||
390 | } | |
391 | } | |
392 | } | |
393 | } catch (DCSExcept ion dcse) { | |
394 | // do high level log only, Det ailed Erro r logged o n lower le vel | |
395 | logger.err or("Insert ing (" + t ag + ") wi th value " + tagValu e + " to O riginal At tribute se quence Fai led "); | |
396 | } | |
397 | ||
398 | try { | |
399 | //now inse rt the new value | |
400 | insertDico mElement(t ag, tag2, value); | |
401 | } catch (DicomExce ption de) { | |
402 | // do high level log only, Det ailed Erro r logged o n lower le vel | |
403 | logger.err or("Insert ing (" + t ag + ") wi th value " + value + " to data set Failed "); | |
404 | ||
405 | } | |
406 | } | |
407 | } ca tch (Dicom Exception de) { | |
408 | logger .error("Ge tting (" + tag + ") from datas et for che ck/update failed "); | |
409 | } | |
410 | retu rn false; | |
411 | } | |
412 | ||
413 | pr ivate Dico mSQElement getChildS equenceEle ment(Strin g tag, Dic omDataSet sq_ds) thr ows DCSExc eption | |
414 | { | |
415 | try | |
416 | { | |
417 | return (DicomSQE lement) sq _ds.findEl ement(new AttributeT ag(tag)); | |
418 | } | |
419 | catc h (DCSExce ption e) | |
420 | { | |
421 | ||
422 | } | |
423 | retu rn null; | |
424 | } | |
425 | ||
426 | ||
427 | /* | |
428 | * | |
429 | * / | |
430 | public HashSet<D icomMap> g etHISMappi ngSet() { | |
431 | re turn getHI SPropertyM appingSet( ); | |
432 | } | |
433 | ||
434 | /* | |
435 | * (no n-Javadoc) | |
436 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etQueryMap pingSet(ja va.util.Ha shSet) | |
437 | */ | |
438 | public void setQ ueryMappin gSet(HashS et<DicomMa p> mapping Set) { | |
439 | th is.service MappingSet = mapping Set; | |
440 | } | |
441 | ||
442 | /* | |
443 | * (no n-Javadoc) | |
444 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etQueryMap pingSet() | |
445 | */ | |
446 | public HashSet<D icomMap> g etQueryMap pingSet() { | |
447 | retu rn this.se rviceMappi ngSet; | |
448 | } | |
449 | ||
450 | /* (non-Java doc) | |
451 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get StudyInsta nceUID() | |
452 | */ | |
453 | public String ge tStudyInst anceUID() { | |
454 | tr y { | |
455 | return dataSet.g etElementS tringValue (DCM.E_STU DY_INSTANC E_UID); | |
456 | } ca tch (DCSEx ception e) { | |
457 | e.prin tStackTrac e(); | |
458 | return null; | |
459 | } | |
460 | } | |
461 | ||
462 | /* | |
463 | * (no n-Javadoc) | |
464 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etStudyIns tanceUID(j ava.lang.S tring) | |
465 | */ | |
466 | pu blic void setStudyIn stanceUID( String stu dyInstance UID) | |
467 | { | |
468 | tr y{ | |
469 | inse rtDicomEle ment("0020 ,000d", nu ll, studyI nstanceUID ); | |
470 | } | |
471 | ca tch(DicomE xception d csX){ | |
472 | logg er.error(" Couldn't i nsert stud yInstanceU ID into th e dataSet" ); | |
473 | } | |
474 | } | |
475 | ||
476 | /* (no n-Javadoc) | |
477 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID() | |
478 | */ | |
479 | public String ge tSeriesIns tanceUID() { | |
480 | tr y { | |
481 | return dataSet.g etElementS tringValue (DCM.E_SER IES_INSTAN CE_UID); | |
482 | } ca tch (DCSEx ception e) { | |
483 | e.prin tStackTrac e(); | |
484 | return null; | |
485 | } | |
486 | } | |
487 | ||
488 | /* | |
489 | * (no n-Javadoc) | |
490 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etSeriesIn stanceUID( java.lang. String) | |
491 | */ | |
492 | pu blic void setSeriesI nstanceUID (String se riesInstan ceUID) | |
493 | { | |
494 | tr y{ | |
495 | inse rtDicomEle ment("0020 ,000e", nu ll, series InstanceUI D); | |
496 | } | |
497 | ca tch(DicomE xception d csX){ | |
498 | logg er.error(" Couldn't i nsert seri esInstance UID into t he dataSet "); | |
499 | } | |
500 | } | |
501 | ||
502 | /* (no n-Javadoc) | |
503 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SOPInstanc eUID() | |
504 | */ | |
505 | public String ge tSOPInstan ceUID() { | |
506 | tr y { | |
507 | return dataSet.g etElementS tringValue (DCM.E_SOP INSTANCE_U ID); | |
508 | } ca tch (DCSEx ception e) { | |
509 | e.prin tStackTrac e(); | |
510 | return null; | |
511 | } | |
512 | } | |
513 | ||
514 | /* | |
515 | * (no n-Javadoc) | |
516 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etSOPInsta nceUID(jav a.lang.Str ing) | |
517 | */ | |
518 | pu blic void setSOPInst anceUID(St ring sopIn stanceUID) | |
519 | { | |
520 | tr y{ | |
521 | inse rtDicomEle ment("0008 ,0018", nu ll, sopIns tanceUID); | |
522 | } | |
523 | ca tch(DicomE xception d csX){ | |
524 | logg er.error(" Couldn't i nsert sopI nstanceUID into the dataSet"); | |
525 | } | |
526 | } | |
527 | ||
528 | /* (no n-Javadoc) | |
529 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID(ja va.lang.St ring) | |
530 | */ | |
531 | public boolean g etStudyIns tanceUID(S tring stud yInstanceU ID) { | |
532 | re turn false ; | |
533 | } | |
534 | ||
535 | /* (no n-Javadoc) | |
536 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID(ja va.lang.St ring) | |
537 | */ | |
538 | public boolean g etSeriesIn stanceUID( String ser iesInstanc eUID) { | |
539 | re turn false ; | |
540 | } | |
541 | ||
542 | /* (no n-Javadoc) | |
543 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SOPInstanc eUID(java. lang.Strin g) | |
544 | */ | |
545 | public boolean g etSOPInsta nceUID(Str ing sopIns tanceUID) { | |
546 | re turn false ; | |
547 | } | |
548 | ||
549 | /* | |
550 | * (no n-Javadoc) | |
551 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#u pdateHISCh angesToDDS (java.util .HashMap) | |
552 | */ | |
553 | public void upda teHISChang esToDDS(Ha shMap<Stri ng, String > HISChang es)throws DicomExcep tion{ | |
554 | if (HISChange s != null) { | |
555 | sanitize HISChanges (HISChange s); | |
556 | Business ObjectToDi comSCUTran slator.upd ateDataSet FromHISCha nges(this, HISChange s, | |
557 | getHIS MappingSet ()); | |
558 | } | |
559 | } | |
560 | ||
561 | /* (no n-Javadoc) | |
562 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get Acquisitio nSite() | |
563 | */ | |
564 | public String ge tAcquisiti onSite() { | |
565 | re turn this. acquisitio nSite; | |
566 | } | |
567 | ||
568 | /* (no n-Javadoc) | |
569 | * @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#set Acquisitio nSite(java .lang.Stri ng) | |
570 | */ | |
571 | public void setA cquisition Site(Strin g site) { | |
572 | } | |
573 | ||
574 | /* | |
575 | * (no n-Javadoc) | |
576 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etSOPClass () | |
577 | */ | |
578 | pu blic Strin g getSOPCl ass(){ | |
579 | tr y { | |
580 | return dataSet.g etElementS tringValue (DCM.E_SOP CLASS_UID) ; | |
581 | } ca tch (DCSEx ception e) { | |
582 | e.prin tStackTrac e(); | |
583 | return null; | |
584 | } | |
585 | } | |
586 | ||
587 | ||
588 | ||
589 | /* (no n-Javadoc) | |
590 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getManu facturer() | |
591 | * / | |
592 | pu blic Strin g getManuf acturer() { | |
593 | tr y { | |
594 | return dataSet.g etElementS tringValue (DCM.E_MAN UFACTURER) ; | |
595 | } ca tch (DCSEx ception e) { | |
596 | e.prin tStackTrac e(); | |
597 | return null; | |
598 | } | |
599 | } | |
600 | ||
601 | /* (non-Java doc) | |
602 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getMode lName() | |
603 | * / | |
604 | pu blic Strin g getModel Name() { | |
605 | tr y { | |
606 | return dataSet.g etElementS tringValue (DCM.E_MAN UFACTURERS _MODEL_NAM E); | |
607 | } ca tch (DCSEx ception e) { | |
608 | e.prin tStackTrac e(); | |
609 | return null; | |
610 | } | |
611 | } | |
612 | ||
613 | ||
614 | /* (non-Java doc) | |
615 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#part10B uffer() | |
616 | * / | |
617 | pu blic byte[ ] part10Bu ffer(boole an updateO nly) { | |
618 | ||
619 | by te[] data = null; | |
620 | ||
621 | tr y { | |
622 | Stri ng outputT S=UID.TRAN SFERLITTLE ENDIAN; // Little En dian Impli cit VR (de fault) | |
623 | if ( updateOnl y ) { | |
624 | String inputTS=g etReceived TransferSy ntax(); | |
625 | if (in putTS != n ull && inp utTS.start sWith("1.2 .840.10008 .1.2.4")) { | |
626 | // for U pdates onl y, do not decompress already c ompressed DICOM Obje cts | |
627 | outputTS =inputTS; | |
628 | } | |
629 | } | |
630 | Dico mSessionSe ttings ss = new Dico mSessionSe ttings(); | |
631 | Byte ArrayOutpu tStream bo s = new By teArrayOut putStream( ); | |
632 | Dico mStreamWri ter writer = new Dic omStreamWr iter( bos, ss ); | |
633 | Dico mFileOutpu t dfo = ne w DicomFil eOutput( | |
634 | writer, | |
635 | outputTS, | |
636 | true, true , ss ); | |
637 | dfo. open(); | |
638 | dfo. writeDataS et( dataSe t ); | |
639 | data = bos.toB yteArray() ; | |
640 | bos. flush(); | |
641 | // d fo.close() ; | |
642 | retu rn (data); | |
643 | } | |
644 | ca tch(DCSExc eption dcs e){ | |
645 | return d ata; | |
646 | } | |
647 | ca tch(IOExce ption ioe) { | |
648 | return d ata; | |
649 | } | |
650 | } | |
651 | ||
652 | ||
653 | /* | |
654 | * (no n-Javadoc) | |
655 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#c reatePatie ntQueryReq uestParame ters() | |
656 | */ | |
657 | public DicomRequ estParamet ers create PatientQue ryRequestP arameters( ) | |
658 | th rows Illeg alQueryDat aException // -- fro m getreque stFromData Set | |
659 | { | |
660 | // R eturn the the query request fr om the DCF DicomData Set in non -DICOM for mat | |
661 | if ( serviceMap pingSet == null){ | |
662 | servic eMappingSe t = new Ha shSet<Dico mMap>(); | |
663 | } | |
664 | else { | |
665 | servic eMappingSe t.clear(); | |
666 | } | |
667 | ||
668 | Hash Set<DicomM ap> tempMa ppingSet = getFindPr opertyMapp ingSet(); | |
669 | Iter ator<Dicom Map> iter = tempMapp ingSet.ite rator(); | |
670 | whil e (iter.ha sNext()){ | |
671 | DicomM ap mapping = iter.ne xt(); | |
672 | try{ | |
673 | if(dataS et.contain sElement(n ew Attribu teTag(mapp ing.getTag ()))){ | |
674 | serviceMap pingSet.ad d(mapping) ; | |
675 | } | |
676 | } | |
677 | catch( DCSExcepti on dcsX){ | |
678 | //do not hing | |
679 | } | |
680 | } | |
681 | ||
682 | serv iceRequest Parameters = DicomTo BusinessOb jectTransl ator.getRe questFromD ataSet( | |
683 | this, | |
684 | serviceM appingSet) ; | |
685 | retu rn service RequestPar ameters; | |
686 | } | |
687 | ||
688 | /* | |
689 | * (non-Java doc) | |
690 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#createS tudyQueryR equestPara meters() | |
691 | * / | |
692 | pu blic Dicom RequestPar ameters cr eateStudyQ ueryReques tParameter s() | |
693 | throws IllegalQu eryDataExc eption | |
694 | { | |
695 | retu rn createP atientQuer yRequestPa rameters() ; | |
696 | } | |
697 | ||
698 | /* | |
699 | * (non-Java doc) | |
700 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#createM oveRequest Parameters () | |
701 | * / | |
702 | pu blic Dicom RequestPar ameters cr eateMoveRe questParam eters() | |
703 | th rows Illeg alQueryDat aException // -- fro m getreque stFromData Set | |
704 | { | |
705 | // R eturn the Move reque st from th e DCF Dico mDataSet i n non-DICO M format ( feedable t o persiste nce) | |
706 | serv iceMapping Set = getM ovePropert yMappingSe t(); | |
707 | ||
708 | serv iceRequest Parameters = DicomTo BusinessOb jectTransl ator.getRe questFromD ataSet( | |
709 | this, | |
710 | serviceMap pingSet); | |
711 | retu rn service RequestPar ameters; | |
712 | } | |
713 | ||
714 | /* | |
715 | * (non-Java doc) | |
716 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getPart ialDicomCo rrectInfo( ) | |
717 | * / | |
718 | pu blic Dicom CorrectInf o getParti alDicomCor rectInfo() { | |
719 | ||
720 | St ring patie ntName = n ull; | |
721 | St ring nonDC MPatientNa me = null; | |
722 | St ring patie ntID = nul l; | |
723 | St ring acces sionNumber = null; | |
724 | St ring caseN umber = nu ll; | |
725 | // String ser viceType = null; | |
726 | St ring study InstanceUI D = null; | |
727 | St ring sopIn stanceUID = null; | |
728 | ||
729 | tr y{ | |
730 | patientN ame = data Set.getEle mentString Value(DCM. E_PATIENTS _NAME); | |
731 | if(patie ntName != null){ | |
732 | pati entName = patientNam e.trim(); | |
733 | nonD CMPatientN ame = pati entName.to String(); | |
734 | } | |
735 | } | |
736 | ca tch(DCSExc eption dcs X){ | |
737 | logger.w arn(dcsX.g etMessage( )); | |
738 | logger .warn(this .getClass( ).getName( )+": Could not retri eve Patien t Name Dic om Element "); | |
739 | } | |
740 | tr y{ | |
741 | patientI D = dataSe t.getEleme ntStringVa lue(DCM.E_ PATIENT_ID ); | |
742 | if(patie ntID != nu ll){ | |
743 | pati entID = pa tientID.tr im(); | |
744 | } | |
745 | } | |
746 | ca tch(DCSExc eption dcs X){ | |
747 | logger.w arn(dcsX.g etMessage( )); | |
748 | logger .warn(this .getClass( ).getName( )+": Could not retri eve Patien t ID Dicom Element") ; | |
749 | } | |
750 | tr y{ | |
751 | accessio nNumber = dataSet.ge tElementSt ringValue( DCM.E_ACCE SSION_NUMB ER); | |
752 | if(acces sionNumber != null){ | |
753 | acce ssionNumbe r = access ionNumber. trim(); | |
754 | case Number = a ccessionNu mber; | |
755 | } | |
756 | } | |
757 | ca tch(DCSExc eption dcs X){ | |
758 | logger.w arn(dcsX.g etMessage( )); | |
759 | logger .warn(this .getClass( ).getName( )+": Could not retri eve Access ion Number Dicom Ele ment"); | |
760 | } | |
761 | tr y{ | |
762 | studyIns tanceUID = dataSet.g etElementS tringValue (DCM.E_STU DY_INSTANC E_UID); | |
763 | if(study InstanceUI D != null) { | |
764 | stud yInstanceU ID = study InstanceUI D.trim(); | |
765 | } | |
766 | } | |
767 | ca tch(DCSExc eption dcs X){ | |
768 | logger.w arn(dcsX.g etMessage( )); | |
769 | logger .warn(this .getClass( ).getName( )+": Could not retri eve Study Instance U ID Dicom E lement"); | |
770 | } | |
771 | tr y{ | |
772 | sopInsta nceUID = d ataSet.get ElementStr ingValue(D CM.E_SOPIN STANCE_UID ); | |
773 | if(sopIn stanceUID != null){ | |
774 | sopI nstanceUID = sopInst anceUID.tr im(); | |
775 | } | |
776 | } | |
777 | ca tch(DCSExc eption dcs X){ | |
778 | logger.w arn(dcsX.g etMessage( )); | |
779 | logger .warn(this .getClass( ).getName( )+": Could not retri eve SOP In stance UID Dicom Ele ment"); | |
780 | } | |
781 | ||
782 | Dico mCorrectIn fo dicomCo rrectInfo = new Dico mCorrectIn fo(patient ID, patien tName, non DCMPatient Name, case Number, ac cessionNum ber, | |
783 | sopIns tanceUID, studyInsta nceUID); | |
784 | retu rn dicomCo rrectInfo; | |
785 | } | |
786 | ||
787 | ||
788 | /* | |
789 | * (non-Java doc) | |
790 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#validat eIOD() | |
791 | * / | |
792 | // @Override | |
793 | pu blic IIODV iolationLi st validat eIOD() thr ows Valida teIODExcep tion, Unkn ownSOPClas sException { | |
794 | ||
795 | IODV iolationLi stImpl vio lationList = null; | |
796 | try{ | |
797 | viol ationList = DicomIns tanceValid ator.getIn stance().v alidate(da taSet); | |
798 | } | |
799 | ca tch(Parser Configurat ionExcepti on pcX){ | |
800 | logg er.error(t his.getCla ss().getNa me()+": Pa rser Confi guration E xception: /n"+pcX.ge tMessage() ); | |
801 | thro w new Vali dateIODExc eption("IO D Validati on Parser problem.") ; | |
802 | } | |
803 | ca tch(Transf ormerExcep tion tX){ | |
804 | logg er.error(t his.getCla ss().getNa me()+": Tr ansformer Exception: /n"+tX.ge tMessage() ); | |
805 | thro w new Vali dateIODExc eption("IO D Validati on Transfo rmer probl em."); | |
806 | } | |
807 | ca tch(Unsupp ortedEncod ingExcepti on ueX){ | |
808 | logg er.error(t his.getCla ss().getNa me()+": Un supported Encoding E xception: /n"+ueX.ge tMessage() ); | |
809 | thro w new Vali dateIODExc eption("IO D Validati on Unsuppo rted Encod ing proble m."); | |
810 | } | |
811 | //Ad ded Throwa ble in cas e of memor y heap spa ce error. | |
812 | catc h(Throwabl e T){ | |
813 | logg er.error(t his.getCla ss().getNa me()+": Er ror or Exc eption: /n "+T.getMes sage()); | |
814 | thro w new Vali dateIODExc eption("IO D Validati on general problem." ); | |
815 | } | |
816 | re turn (IIOD ViolationL ist)violat ionList; | |
817 | } | |
818 | ||
819 | /* | |
820 | * (non-Java doc) | |
821 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#validat eVR() | |
822 | * / | |
823 | public void vali dateVR() | |
824 | th rows Valid ateVRExcep tion{ | |
825 | ||
826 | VR Validator validator = VRValida tor.instan ce(); | |
827 | Va lidationEr rorList li st = valid ator.valid ateDataSet (dataSet); | |
828 | if (list.hasE rrors()){ | |
829 | int errorCount = list.ge tErrorCoun t(); | |
830 | Vect or<Validat ionError> vectorList = list.ge tErrorVect or(); | |
831 | Iter ator<Valid ationError > iter = v ectorList. iterator() ; | |
832 | whil e(iter.has Next()){ | |
833 | Valida tionError error = (V alidationE rror)iter. next(); | |
834 | DicomE lement ele ment = err or.getElem ent(); | |
835 | if(ele ment.lengt h() == 0){ | |
836 | errorCou nt--; | |
837 | } | |
838 | } | |
839 | if(e rrorCount > 0){ | |
840 | logger .error("Th e DICOMDat aSet has t he followi ng VR erro rs. "); | |
841 | logger .error(lis t.toString ()); | |
842 | throw new Valida teVRExcept ion(); | |
843 | } | |
844 | } | |
845 | } | |
846 | ||
847 | /* (non-Java doc) | |
848 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getPa tientRef() | |
849 | * / | |
850 | pu blic Patie ntRef getP atientRef( ) { | |
851 | Stri ng creatin gEntity = ""; // loc al siteID, stationID or divisi onID -- th e creating (DB) enti ty of the ID | |
852 | if ( config != null) | |
853 | creati ngEntity = config.ge tSiteId(); // this i s the Stat ion# not t he IEN in institutio n file!) | |
854 | ||
855 | retu rn new Pat ientRef("" , "V", cre atingEntit y, "D"); / / DFN valu e will be resolved a fter Patie nt Lookup | |
856 | } | |
857 | ||
858 | /* (non-Java doc) | |
859 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getPr ocedureRef () | |
860 | * / | |
861 | pu blic Proce dureRef ge tProcedure Ref(Instru mentConfig instrumen t) { | |
862 | Proc edureRef p rocRef = n ew Procedu reRef (nul l, null, n ull, null, null, nul l); | |
863 | Stri ng accessi onNumber = getString ValueFromE lement("00 08,0050", ""); // if no ACC# w e don't ad d to new D B anyway, But DICOM Correct | |
864 | proc Ref.setDic omAccessio nNumber(ac cessionNum ber); // t his is the in-proces sing ACC# from heade r! not fro m ProcRef domain! | |
865 | proc Ref.setPro cedureID(a ccessionNu mber); | |
866 | proc Ref.setAss igningAuth ority("V") ; | |
867 | Stri ng creatin gEntity = ""; // loc al siteID, stationID or divisi onID -- th e creating (DB) enti ty of the ID | |
868 | if ( config != null) | |
869 | creati ngEntity = config.ge tSiteId(); // this i s the Stat ion# not t he IEN in institutio n file!) | |
870 | proc Ref.setCre atingEntit y(creating Entity); | |
871 | ||
872 | if(i nstrument. isConsultI nstrument( )) | |
873 | { | |
874 | proc Ref.setPac kageIX("CO NS"); | |
875 | } | |
876 | el se | |
877 | { | |
878 | // T ODO: Check for other entities based on A CC# format ? | |
879 | proc Ref.setPac kageIX(ins trument.ge tService() ); | |
880 | } | |
881 | ||
882 | proc Ref.setPro cedureIDTy pe(instrum ent.getSer vice()); | |
883 | ||
884 | Stri ng stdTime = getStri ngValueFro mElement(" 0040,2005" , ""); // Imaging Se rvice Requ est Issue Time | |
885 | if ( !stdTime.i sEmpty()) | |
886 | stdTim e = "." + stdTime; | |
887 | Stri ng procDT = (getStri ngValueFro mElement(" 0040,2004" , "") + st dTime); // ISR Issue Date&Time | |
888 | if ( procDT.isE mpty()) { | |
889 | stdTim e = getStr ingValueFr omElement( "0008,0030 ", ""); // study tim e | |
890 | if (!s tdTime.isE mpty()) | |
891 | stdTime = "." + st dTime; | |
892 | procDT = (getStr ingValueFr omElement( "0008,0020 ", "") + s tdTime); / / study Da te&Time | |
893 | ||
894 | } | |
895 | proc Ref.setPro cedureExam DateTime(p rocDT); | |
896 | ||
897 | retu rn procRef ; | |
898 | } | |
899 | ||
900 | /* (non-Java doc) | |
901 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSt udy() | |
902 | * / | |
903 | pu blic Study getStudy( ) { | |
904 | // R eturn the Study usin g the data from the DCF DicomD ataSet | |
905 | Stri ng stdDate = getStri ngValueFro mElement(" 0008,0020" , ""); | |
906 | Stri ng stdTime = getStri ngValueFro mElement(" 0008,0030" , ""); | |
907 | Stri ng stdTime WithSepara tor = stdT ime; | |
908 | if ( !stdTimeWi thSeparato r.isEmpty( )) | |
909 | stdTim eWithSepar ator = "." + stdTime WithSepara tor; | |
910 | ||
911 | Stud y study = new Study( | |
912 | getStrin gValueFrom Element("0 020,000d", ""), // s tudyIUID - - needs op tional Fil l-in after Study UID Check! | |
913 | "", // o riginalStu dyIUID,-- needs opti onal Fill- in after S tudy UID C heck! | |
914 | getStrin gValueFrom Element("0 020,0010", ""), // s tudyID | |
915 | getStrin gValueFrom Element("0 008,1030", ""), // d escription | |
916 | getStrin gValueFrom Element("0 008,0061", ""), // m odalitiesI nStudy | |
917 | (getStri ngValueFro mElement(" 0008,0020" , "") + st dTimeWithS eparator), // studyD ateTime | |
918 | getStrin gValueFrom Element("0 040,1002", ""), // r easonForSt udy | |
919 | "A", // Acq. in pr ogress ("A "), partia lly comple te ("P") o r complete d ("C") | |
920 | "V", // originIX = 'V'A / 'D 'OD / 'F'E E / 'O'the r | |
921 | getStrin gValueFrom Element("0 040,1003", "R"), // priority ‘ S'TAT, ‘R' OUTINE, 'L 'OW or 'H' IGH | |
922 | getStrin gValueFrom Element("0 008,0050", "") // Ac cession Nu mber for P ete | |
923 | ); | |
924 | stud y.setStudy Date(stdDa te); | |
925 | stud y.setStudy Time(stdTi me); | |
926 | stud y.setRefer ringPhysic ian(DicomU tils.refor matDicomNa me(getStri ngValueFro mElement(" 0008,0090" , ""))); | |
927 | ||
928 | retu rn study; | |
929 | } | |
930 | /* (non-Java doc) | |
931 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSe ries() | |
932 | * / | |
933 | pu blic Serie s getSerie s(DicomAE dicomAE,In strumentCo nfig instr ument) { | |
934 | // R eturn the Series usi ng the dat a from the DCF Dicom DataSet | |
935 | Stri ng serTime = getStri ngValueFro mElement(" 0008,0031" , ""); | |
936 | Stri ng remoteA ETitle = ( dicomAE != null) ? d icomAE.get RemoteAETi tle() : "" ; | |
937 | Stri ng localAE Title = (d icomAE != null) ? di comAE.getL ocalAETitl e() : ""; | |
938 | Stri ng acqLoca tion = (in strument ! = null) ? instrument .getSiteId () : Dicom ServerConf iguration. getConfigu ration().g etSiteId() ; | |
939 | if ( !serTime.i sEmpty()) | |
940 | serTim e = "." + serTime; | |
941 | Seri es series = new Seri es( | |
942 | getStrin gValueFrom Element("0 020,000e", ""), // s eriesIUID -- needs o ptional Fi ll-in afte r Series U ID Check! | |
943 | "", // o riginalSer iesIUID, - - needs op tional Fil l-in after Series UI D Check! | |
944 | getStrin gValueFrom Element("0 020,0011", ""), // s erNum | |
945 | getStrin gValueFrom Element("0 008,103e", ""), // s eries desc ription | |
946 | getStrin gValueFrom Element("0 008,0060", ""), // m odality | |
947 | getStrin gValueFrom Element("0 008,0015", ""), // b odypart | |
948 | //The pu rpose of t his is to assign the Site Numb er of wher e the DICO M object c ame from. This is b ased on th e | |
949 | // Instr umentConfi g object. We added it to over ride the H DIG's Site Number. | |
950 | acqLocat ion, // ac qSite | |
951 | (getStri ngValueFro mElement(" 0008,0021" , "") + se rTime), // series Da te.Time | |
952 | getStrin gValueFrom Element("0 008,0070", ""), // s eries Crea tor -- Man ufacturer | |
953 | getStrin gValueFrom Element("0 008,1090", ""), // s eries Crea ter Device Model -- Manuf. Mod el | |
954 | getStrin gValueFrom Element("0 020,0052", ""), // F rame Of Re ference UI D | |
955 | getStrin gValueFrom Element("0 020,0060", ""), // l aterality | |
956 | getStrin gValueFrom Element("0 018,5100", ""), // S patial Pos ition | |
957 | remoteAE Title, | |
958 | localAET itle, | |
959 | "1", // "DICOM Sto rage", vIA cqEntryPoi nt | |
960 | "0 ", // IODV iolationDe tected - n one | |
961 | "C LIN", | |
962 | "" , // proc EventIX | |
963 | "" , // spec SubSpecIX | |
964 | "" ); // tiuN oteReferen ce | |
965 | ||
966 | // N ew fields for DICOM Importer | |
967 | seri es.setFaci lity(getSt ringValueF romElement ("0008,008 0", "")); | |
968 | seri es.setInst itutionAdd ress(getSt ringValueF romElement ("0008,008 1", "")); | |
969 | ||
970 | retu rn series; | |
971 | } | |
972 | ||
973 | /* (non-Java doc) | |
974 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSO PInstance( ) | |
975 | * / | |
976 | pu blic SOPIn stance get SOPInstanc e() { | |
977 | // R eturn the Instance u sing the d ata in the DCF Dicom DataSet | |
978 | Stri ng sopTime = getStri ngValueFro mElement(" 0008,0033" , ""); | |
979 | if ( !sopTime.i sEmpty()) | |
980 | sopTim e = "." + sopTime; | |
981 | SOPI nstance so pInstance = new SOPI nstance( | |
982 | getStr ingValueFr omElement( "0008,0018 ", ""), // SOPInstan ceUID -- n eeds optio nal Fill-i n after SO P UID Chec k! | |
983 | "", // originalS OPInstance UID -- nee ds optiona l Fill-in after SOP UID Check! | |
984 | getStr ingValueFr omElement( "0008,0016 ", ""), // SOPClassU ID | |
985 | "IMAGE ", // type IX by natu ral key. | |
986 | "", // image des cription | |
987 | (getSt ringValueF romElement ("0008,002 3", "") + sopTime), // acqDate Time | |
988 | getStr ingValueFr omElement( "0020,0012 ", ""), // acqNumber | |
989 | getStr ingValueFr omElement( "0020,0013 ", ""), // instanceN umber | |
990 | "", // is Key im age? - 1 o r 0 | |
991 | "", // image Not OK? - 1 o r 0 | |
992 | getStr ingValueFr omElement( "0018,0010 ", ""), // contrastB olusAgent | |
993 | getStr ingValueFr omElement( "0020,0032 ", ""), // imagePosi tion | |
994 | getStr ingValueFr omElement( "0020,0037 ", ""), // imageOrie ntation | |
995 | getStr ingValueFr omElement( "0020,0020 ", ""), // patientOr ientation | |
996 | getStr ingValueFr omElement( "0028,0004 ", ""), // photometr icInterpta tion | |
997 | getStr ingValueFr omElement( "0028,0008 ", ""), // numberOfF rames | |
998 | getStr ingValueFr omElement( "0028,0010 ", ""), // rows | |
999 | getStr ingValueFr omElement( "0028,0011 ", ""), // columns | |
1000 | getStr ingValueFr omElement( "0028,0030 ", ""), // pixelSpac ing | |
1001 | getStr ingValueFr omElement( "0028,0002 ", ""), // samplesPe rPixel | |
1002 | getStr ingValueFr omElement( "0028,0100 ", ""), // bitsAlloc ated | |
1003 | getStr ingValueFr omElement( "0028,0101 ", ""), // bitsStore d | |
1004 | getStr ingValueFr omElement( "0028,0102 ", ""), // highBit | |
1005 | getStr ingValueFr omElement( "0028,0103 ", ""), // pixelRepr esentation | |
1006 | getStr ingValueFr omElement( "0028,1052 ", ""), // rescaleIn tercept | |
1007 | getStr ingValueFr omElement( "0028,1053 ", ""), // rescaleSl ope | |
1008 | getStr ingValueFr omElement( "0028,1050 ", ""), // windowCen ter | |
1009 | getStr ingValueFr omElement( "0028,1051 ", ""), // windowWid th | |
1010 | getStr ingValueFr omElement( "0018,1004 ", ""), // plateID | |
1011 | getStr ingValueFr omElement( "0018,0050 ", ""), // sliceThic kness | |
1012 | getStr ingValueFr omElement( "0018,1100 ", ""), // reconstru ctionDiame ter | |
1013 | getStr ingValueFr omElement( "0018,0020 ", ""), // scanningS equence | |
1014 | getStr ingValueFr omElement( "0018,0021 ", ""), // scanningV ariant | |
1015 | getStr ingValueFr omElement( "0018,0023 ", ""), // mrAcqType | |
1016 | getStr ingValueFr omElement( "0040,0556 ", ""), // acqContex tDescripti on | |
1017 | getStr ingValueFr omElement( "0018,0080 ", ""), // repetitio nTime | |
1018 | getStr ingValueFr omElement( "0018,0081 ", ""), // echoTime | |
1019 | (getSt ringValueF romElement ("0018,115 0", "") + "\\" + get StringValu eFromEleme nt("0018,1 155", "")) , // refer encedSOPIn stances | |
1020 | "0018, 1150\\0018 ,1155", | |
1021 | "", // Microscop icObjectiv e | |
1022 | "", // lab Slice Id | |
1023 | "", // his tological Stain n/a for RAD st udies | |
1024 | getStr ingValueFr omElement( "0020,0062 ", "") // imageLater ality (L, R, B or U) | |
1025 | ); | |
1026 | ||
1027 | // N ew fields for DICOM Importer | |
1028 | sopI nstance.se tTransferS yntaxUid(g etStringVa lueFromEle ment("0004 ,1512", "" )); | |
1029 | retu rn sopInst ance; | |
1030 | } | |
1031 | ||
1032 | /* (non-Java doc) | |
1033 | * @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getIn stanceFile () | |
1034 | * / | |
1035 | pu blic Insta nceFile ge tInstanceF ile() { | |
1036 | Inst anceFile i nstanceFil e = new In stanceFile ( | |
1037 | "", // A rtifactTok en | |
1038 | "0", // isConfiden tial | |
1039 | "1", // isOriginal | |
1040 | "", // d eleteDateT ime in the format YY YMMDD.HHMM SS | |
1041 | "", // d eletedBy | |
1042 | "", // d eleteReaso n | |
1043 | getStrin gValueFrom Element("0 008,0008", ""), // i mageType | |
1044 | getStrin gValueFrom Element("0 008,2111", ""), // d erivationD esc | |
1045 | getStrin gValueFrom Element("0 008,2112", ""), // c ompression Ratio | |
1046 | getStrin gValueFrom Element("0 008,2114", ""), // compressio nMethod | |
1047 | 0); | |
1048 | retu rn instanc eFile; | |
1049 | } | |
1050 | ||
1051 | /* | |
1052 | * (non-Java doc) | |
1053 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getSour ceAET() | |
1054 | * / | |
1055 | pu blic Strin g getSourc eAET() { | |
1056 | retu rn sourceA ET; | |
1057 | } | |
1058 | ||
1059 | /* | |
1060 | * (non-Java doc) | |
1061 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setSour ceAET(java .lang.Stri ng) | |
1062 | * / | |
1063 | pu blic void setSourceA ET(String sourceAET) { | |
1064 | } | |
1065 | ||
1066 | /* | |
1067 | * (non-Java doc) | |
1068 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getRece ivedTransf erSyntax() | |
1069 | * / | |
1070 | pu blic Strin g getRecei vedTransfe rSyntax() { | |
1071 | retu rn receive dTransferS yntax; | |
1072 | } | |
1073 | ||
1074 | /* | |
1075 | * (non-Java doc) | |
1076 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setRece ivedTransf erSyntax(j ava.lang.S tring) | |
1077 | * / | |
1078 | pu blic void setReceive dTransferS yntax(Stri ng receive dTransferS yntax) { | |
1079 | this .receivedT ransferSyn tax = rece ivedTransf erSyntax; | |
1080 | } | |
1081 | ||
1082 | // CODECR #IM AG00000440 - SSN For mat issue. | |
1083 | /* | |
1084 | * | |
1085 | * / | |
1086 | public void chan geDataPres entation() { | |
1087 | ||
1088 | if(D icomServer Configurat ion.getCon figuration ().isForma tPatientID withDashes ()){ | |
1089 | try{ | |
1090 | if(dataS et.contain sElement(D CM.E_PATIE NT_ID)){ | |
1091 | String pat ientID = d ataSet.get ElementStr ingValue(D CM.E_PATIE NT_ID, "") ; | |
1092 | if(!patien tID.equals ("")){ | |
1093 | St ring out = StringUti l.formatPa tientIDWit hDashes(pa tientID); | |
1094 | da taSet.inse rt(DCM.E_P ATIENT_ID, out); | |
1095 | } | |
1096 | } | |
1097 | } | |
1098 | catch( DCSExcepti on dX){ | |
1099 | logger.e rror("Fail ed to re-f ormat the Patient ID ."); | |
1100 | } | |
1101 | } | |
1102 | } | |
1103 | ||
1104 | /* | |
1105 | * (no n-Javadoc) | |
1106 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etQueryRet rieveLevel () | |
1107 | */ | |
1108 | public String ge tQueryRetr ieveLevel( ){ | |
1109 | St ring qrLev el = dataS et.getElem entStringV alue( DCM. E_QUERYRET RIEVE_LEVE L, "" ); | |
1110 | if (qrLevel ! = null){ | |
1111 | qrLe vel = qrLe vel.trim() ; | |
1112 | } | |
1113 | re turn qrLev el; | |
1114 | } | |
1115 | ||
1116 | /* | |
1117 | * (non-Java doc) | |
1118 | * @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etPatientS tudyInfo(g ov.va.med. imaging.ex change.bus iness.dico m.Instrume ntConfig) | |
1119 | */ | |
1120 | pu blic Patie ntStudyInf o getPatie ntStudyInf o(Instrume ntConfig i nstrument) throws Di comExcepti on { | |
1121 | ||
1122 | Pati entStudyIn fo patient StudyInfo = new Pati entStudyIn fo(); | |
1123 | ||
1124 | // E xtract val ues from D ICOM data set | |
1125 | Stri ng accessi onNumber = getString ValueFromE lement("00 08,0050", ""); | |
1126 | ||
1127 | Stri ng patient Name = get StringValu eFromEleme nt("0010,0 010", ""); | |
1128 | Stri ng patient Id = getSt ringValueF romElement ("0010,002 0", ""); | |
1129 | Stri ng patient BirthDate = getStrin gValueFrom Element("0 010,0030", ""); | |
1130 | Stri ng patient Sex = getS tringValue FromElemen t("0010,00 40", ""); | |
1131 | Stri ng patient ICN = ""; | |
1132 | ||
1133 | // S et propert ies on pat ientStudyI nfo object | |
1134 | pati entStudyIn fo.setStud yAccession Number(acc essionNumb er); | |
1135 | pati entStudyIn fo.setStud yImagingSe rvice(inst rument.get Service()) ; | |
1136 | pati entStudyIn fo.setPati entName(pa tientName) ; | |
1137 | pati entStudyIn fo.setPati entID(pati entId); | |
1138 | pati entStudyIn fo.setPati entBirthDa te(patient BirthDate) ; | |
1139 | pati entStudyIn fo.setPati entSex(pat ientSex); | |
1140 | pati entStudyIn fo.setPati entICN(pat ientICN); | |
1141 | ||
1142 | retu rn patient StudyInfo; | |
1143 | } | |
1144 | ||
1145 | /* * | |
1146 | * @return t he name | |
1147 | * / | |
1148 | pu blic Strin g getName( ) { | |
1149 | retu rn name; | |
1150 | } | |
1151 | ||
1152 | /* * | |
1153 | * @param na me the nam e to set | |
1154 | * / | |
1155 | pu blic void setName(St ring name) { | |
1156 | } | |
1157 | ||
1158 | /* (non-Java doc) | |
1159 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getAffe ctedSOPCla ss() | |
1160 | * / | |
1161 | pu blic Strin g getAffec tedSOPClas s() { | |
1162 | tr y { | |
1163 | return dataSet.g etElementS tringValue (DCM.E_AFF ECTED_SOPC LASS_UID); | |
1164 | } ca tch (DCSEx ception e) { | |
1165 | e.prin tStackTrac e(); | |
1166 | return null; | |
1167 | } | |
1168 | } | |
1169 | ||
1170 | /* (non-Java doc) | |
1171 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setAffe ctedSOPCla ss(java.la ng.String) | |
1172 | * / | |
1173 | pu blic void setAffecte dSOPClass( String sop Class) { | |
1174 | tr y{ | |
1175 | inse rtDicomEle ment("0008 ,0016", nu ll, sopCla ss); | |
1176 | } | |
1177 | ca tch(DicomE xception d csX){ | |
1178 | logg er.error(" Couldn't i nsert SOP Class UID into the d ataSet"); | |
1179 | } | |
1180 | ||
1181 | } | |
1182 | ||
1183 | /* (no n-Javadoc) | |
1184 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setServ iceType(ja va.lang.St ring) | |
1185 | * / | |
1186 | pu blic void setAETDefa ultService Type(Strin g type) { | |
1187 | this .aETDefaul tServiceTy pe = type; | |
1188 | ||
1189 | } | |
1190 | ||
1191 | /* (non-Java doc) | |
1192 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getServ iceType() | |
1193 | * / | |
1194 | pu blic Strin g getAETDe faultServi ceType() { | |
1195 | retu rn this.aE TDefaultSe rviceType; | |
1196 | } | |
1197 | ||
1198 | /* | |
1199 | * (non-Java doc) | |
1200 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#insertT oOriginalA ttributeSe quence(jav a.lang.Str ing, java. lang.Strin g, java.la ng.String) | |
1201 | * / | |
1202 | pu blic void insertToOr iginalAttr ibuteSeque nce(String tag, Stri ng tagValu e, String context) { | |
1203 | try { | |
1204 | insert DicomEleme nt(origina lAttribute SequenceTa g, tag, ta gValue); | |
1205 | } ca tch (Dicom Exception de) { | |
1206 | logg er.error(" Inserting (" + tag + ") with U ID " + tag Value + " to Origina l Attribut e sequence Failed " + context) ; | |
1207 | } | |
1208 | } | |
1209 | ||
1210 | /* | |
1211 | * (non-Java doc) | |
1212 | * @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#insertT oOriginalA ttributeSe quence(jav a.lang.Str ing, java. lang.Strin g) | |
1213 | * / | |
1214 | pu blic void insertToOr iginalAttr ibuteSeque nce(String tag, Stri ng context ) { | |
1215 | try { | |
1216 | insert DicomEleme nt(origina lAttribute SequenceTa g, tag, ge tStringVal ueFromElem ent(tag, n ull)); | |
1217 | } ca tch (Dicom Exception de) { | |
1218 | logg er.error(" Inserting (" + tag + ") to Ori ginal Attr ibute sequ ence Faile d " + cont ext); | |
1219 | } | |
1220 | } | |
1221 | ||
1222 | pu blic Strin g getTrans actionUID( ){ | |
1223 | tr y { | |
1224 | return dataSet.g etElementS tringValue (DCM.E_TRA NSACTION_U ID); | |
1225 | } ca tch (DCSEx ception e) { | |
1226 | e.prin tStackTrac e(); | |
1227 | return null; | |
1228 | } | |
1229 | } | |
1230 | ||
1231 | /* | |
1232 | * this meth od inserts DICOM SOP Class/Ins tance elem ent pairs into a sto rage commi tment stru cture. | |
1233 | * This sequ ence is us ed to keep track of Storage Co mmitment r equests un til a resp onse is de livered to the sende r. | |
1234 | * / | |
1235 | pu blic List< StorageCom mitElement > getRefSO PUIDList() { | |
1236 | List <StorageCo mmitElemen t> sCEs= n ew ArrayLi st<Storage CommitElem ent>(); | |
1237 | sCEs .clear(); | |
1238 | ||
1239 | int i=0; | |
1240 | try { | |
1241 | DicomS QElement s q_e = (Dic omSQElemen t) dataSet .findEleme nt(DCM.E_R EFERENCED_ SOP_SEQUEN CE); | |
1242 | if (sq _e != null ) { | |
1243 | // extra ct element s from seq uence data set | |
1244 | for (i=0 ; ; i++) { // took ( back) out correct lo oking code : "i<sq_e. length()" -- did not fill list !!! | |
1245 | DicomDataS et sq_ds = sq_e.SQ(i ); // hand le sequenc e elements | |
1246 | StorageCom mitElement sCE = new StorageCo mmitElemen t(); | |
1247 | sCE.setSop ClassUid(s q_ds.getEl ementStrin gValue(DCM .E_REFEREN CED_SOPCLA SS_UID)); | |
1248 | sCE.setSOP InstanceUI D(sq_ds.ge tElementSt ringValue( DCM.E_REFE RENCED_SOP INSTANCE_U ID)); | |
1249 | sCEs.add(s CE); | |
1250 | } | |
1251 | } | |
1252 | } | |
1253 | catc h (DCSExce ption de) { | |
1254 | if (i==0 ) | |
1255 | logger.err or("Error extracting SOP refer ences from Storage C ommit Requ est"); | |
1256 | } | |
1257 | ||
1258 | retu rn sCEs; | |
1259 | } | |
1260 | ||
1261 | /* * | |
1262 | * ret urns the D ICOM Study Root, Stu dy level C -FIND DICO M to java mapping se t. (to be used | |
1263 | * for Query Req uest DataS et transla tion.) | |
1264 | * The mapping s et is hard coded for legacy but queried f rom persis tence mapp ing table for RE | |
1265 | * @re turn HashS et contain ing the ma pping set: ("gggg,ee ee", value ) for lega cy, (field Name, valu e) otherwi se | |
1266 | */ | |
1267 | privat e HashSet< DicomMap> getHISProp ertyMappin gSet() | |
1268 | { | |
1269 | // C reate the HashSet | |
1270 | Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>(); | |
1271 | ||
1272 | // feed s tatic tabl e for lega cy(could b e in M per sistence!! !!) | |
1273 | hash Set.add(ne w MockDico mMap("0008 ,0018", nu ll, "HISUp date", "SO PInstanceU ID", 1)); | |
1274 | hash Set.add(ne w MockDico mMap("0008 ,0020", nu ll, "HISUp date", "St udyDate", 1)); | |
1275 | hash Set.add(ne w MockDico mMap("0008 ,0050", nu ll, "HISUp date", "Ac cessionNum ber", 1)); | |
1276 | ha shSet.add( new MockDi comMap("00 08,0090", null, "HIS Update", " ReferringP hysiciansN ame", 1)); | |
1277 | ha shSet.add( new MockDi comMap("00 08,1030", null, "HIS Update", " Procedure" , 1)); | |
1278 | ha shSet.add( new MockDi comMap("00 08,1032", "0008,0100 ", "HISUpd ate", "CPT Code", 1)) ; | |
1279 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0102", "HISUpdat e", "CodeS chemeDesig nator", 1) ); | |
1280 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0104", "HISUpdat e", "CodeM eaning", 1 )); | |
1281 | ha shSet.add( new MockDi comMap("00 08,1050", null, "HIS Update", " Performing Physician" , 1)); | |
1282 | ||
1283 | ha shSet.add( new MockDi comMap("00 10,0010", null, "HIS Update", " PatientNam e", 1)); | |
1284 | hash Set.add(ne w MockDico mMap("0010 ,0020", nu ll, "HISUp date", "Pa tientId", 1)); | |
1285 | ha shSet.add( new MockDi comMap("00 10,0030", null, "HIS Update", " PatientBir thDate", 1 )); | |
1286 | ha shSet.add( new MockDi comMap("00 10,0032", null, "HIS Update", " PatientBir thTime", 1 )); | |
1287 | ha shSet.add( new MockDi comMap("00 10,0040", null, "HIS Update", " PatientSex ", 1)); | |
1288 | ha shSet.add( new MockDi comMap("00 10,1000", null, "HIS Update", " OtherPatie ntIDs", 1) ); | |
1289 | ha shSet.add( new MockDi comMap("00 10,1040", null, "HIS Update", " PatientAdd ress", 1)) ; | |
1290 | ha shSet.add( new MockDi comMap("00 10,2000", null, "HIS Update", " MedicalAle rts", 1)); | |
1291 | ha shSet.add( new MockDi comMap("00 10,2160", null, "HIS Update", " PatientRac e", 1)); | |
1292 | ||
1293 | hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "HISUp date", "St udyInstanc eUID", 1)) ; | |
1294 | ha shSet.add( new MockDi comMap("00 20,000E", null, "HIS Update", " SeriesInst anceUID", 1)); | |
1295 | ||
1296 | ha shSet.add( new MockDi comMap("00 32,1032", null, "HIS Update", " Requesting PhysicianN ame", 1)); | |
1297 | hash Set.add(ne w MockDico mMap("0032 ,1033", nu ll, "HISUp date", "Re questingSe rvice", 1) ); | |
1298 | ha shSet.add( new MockDi comMap("00 32,1060", null, "HIS Update", " RequestedP rocedureDe scription" , 1)); | |
1299 | ha shSet.add( new MockDi comMap("00 32,1064", "0008,0100 ", "HISUpd ate", "CPT Code", 1)) ; | |
1300 | hash Set.add(ne w MockDico mMap("0032 ,1064", "0 008,0102", "HISUpdat e", "CodeS chemeDesig nator", 1) ); | |
1301 | hash Set.add(ne w MockDico mMap("0032 ,1064", "0 008,0104", "HISUpdat e", "CodeM eaning", 1 )); | |
1302 | ||
1303 | hash Set.add(ne w MockDico mMap("0038 ,0300", nu ll, "HISUp date", "Cu rrentPatie ntLocation ", 1)); | |
1304 | hash Set.add(ne w MockDico mMap("0032 ,1020", nu ll, "HISUp date", "Sc heduled St udy Locati on", 1)); | |
1305 | ||
1306 | retu rn hashSet ; | |
1307 | } | |
1308 | ||
1309 | /* * | |
1310 | * returns t he DICOM S tudy Root, Study lev el C-FIND DICOM to j ava mappin g set. (to be used | |
1311 | * for Query Request D ataSet tra nslation.) | |
1312 | * The mappi ng set is hardcoded for legacy but queri ed from pe rsistence mapping ta ble for RE | |
1313 | * @return H ashSet con taining th e mapping set: ("ggg g,eeee", v alue) for legacy, (f ieldName, value) oth erwise | |
1314 | * / | |
1315 | pr ivate Hash Set<DicomM ap> getFin dPropertyM appingSet( ) | |
1316 | { | |
1317 | // C reate the HashSet | |
1318 | Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>(); | |
1319 | ||
1320 | // feed s tatic tabl e for Stud y Root Stu dy level q uery (coul d be in M persistenc e!!!!) | |
1321 | hash Set.add(ne w MockDico mMap("0008 ,0020", nu ll, "Query Request", "StudyDate ", 1)); // DA -> Str ing | |
1322 | hash Set.add(ne w MockDico mMap("0008 ,0030", nu ll, "Query Request", "StudyDate ", 1)); // TM -> Str ing( | |
1323 | hash Set.add(ne w MockDico mMap("0008 ,0050", nu ll, "Query Request", "Accession Number", 1 )); // SH -> String( 16) | |
1324 | ha shSet.add( new MockDi comMap("00 08,0052", null, "Que ryRequest" , "Level", 1)); // D A -> Strin g | |
1325 | ha shSet.add( new MockDi comMap("00 08,0061", null, "Que ryRequest" , "Modalit ies in Stu dy", 1)); // DA -> S tring | |
1326 | hash Set.add(ne w MockDico mMap("0010 ,0010", nu ll, "Query Request", "Name", 1) ); // PN - > String(6 4) | |
1327 | hash Set.add(ne w MockDico mMap("0010 ,0020", nu ll, "Query Request", "PatientId ", 1)); // LO -> Str ing(64) | |
1328 | hash Set.add(ne w MockDico mMap("0020 ,0010", nu ll, "Query Request", "StudyId", 1)); // S H -> Strin g(16) | |
1329 | hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "Query Request", "StudyInst anceUID", 1)); // UI -> String (64) | |
1330 | hash Set.add(ne w MockDico mMap("0008 ,0090", nu ll, "Query Request", "Referring PhysicianN ame", 1)); // PN -> String(64) | |
1331 | hash Set.add(ne w MockDico mMap("0008 ,1030", nu ll, "Query Request", "Descripti on", 1)); // LO -> S tring(64) | |
1332 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0100", "QueryReq uest", "Me dicalSpeci altyProced ureCode", 1)); // SQ /SH -> Str ing(16) | |
1333 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0102", "QueryReq uest", "Co deSchemeDe signator", 1)); // S Q/SH -> St ring(16) | |
1334 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0103", "QueryReq uest", "Co deSchemeVe rsion", 1) ); // SQ/S H -> Strin g(16) | |
1335 | hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0104", "QueryReq uest", "Co deMeaning" , 1)); // SQ/LO -> S tring(64) | |
1336 | hash Set.add(ne w MockDico mMap("0008 ,1060", nu ll, "Query Request", "ReadingPh ysician", 1)); // n *PN -> 5*S tring(64) | |
1337 | hash Set.add(ne w MockDico mMap("0010 ,0030", nu ll, "Query Request", "DateOfBir th", 1)); // DA -> S tring(15) | |
1338 | hash Set.add(ne w MockDico mMap("0010 ,0032", nu ll, "Query Request", "TimeOfBir th", 1)); // DA -> S tring(15) | |
1339 | hash Set.add(ne w MockDico mMap("0010 ,0040", nu ll, "Query Request", "Sex", 1)) ; // CS -> String(1) | |
1340 | hash Set.add(ne w MockDico mMap("0010 ,1000", nu ll, "Query Request", "OtherPati entIds", 1 )); // LO -> String( 64) | |
1341 | hash Set.add(ne w MockDico mMap("0010 ,1001", nu ll, "Query Request", "OtherPati entNames", 1)); // P N -> Strin g(64) | |
1342 | hash Set.add(ne w MockDico mMap("0010 ,1010", nu ll, "Query Request", "PatientAg e", 1)); / / AS -> St ring(4) | |
1343 | hash Set.add(ne w MockDico mMap("0010 ,2160", nu ll, "Query Request", "EthnicGro up", 1)); // SH -> S tring(16) | |
1344 | hash Set.add(ne w MockDico mMap("0010 ,2180", nu ll, "Query Request", "Occupatio n", 1)); / / SH -> St ring(16) | |
1345 | hash Set.add(ne w MockDico mMap("0010 ,21B0", nu ll, "Query Request", "adddition alPatientH istory", 1 )); // LT -> String( 10240) | |
1346 | hash Set.add(ne w MockDico mMap("0020 ,1206", nu ll, "Query Request", "NumberOfS tudySeries ", 1)); // IS -> Str ing(12) | |
1347 | hash Set.add(ne w MockDico mMap("0020 ,1208", nu ll, "Query Request", "NumberOfS tudyInstan ces", 1)); // IS -> String(12) | |
1348 | hash Set.add(ne w MockDico mMap("4008 ,010C", nu ll, "Query Request", "Interpret attionAuth or", 1)); // PN -> S tring(64) | |
1349 | ||
1350 | retu rn hashSet ; | |
1351 | } | |
1352 | ||
1353 | /* * | |
1354 | * returns t he DICOM S tudy Root, Study lev el C-MOVE DICOM to j ava mappin g set. (to be used | |
1355 | * for Move (Study) Da taSet tran slation.) | |
1356 | * The mappi ng set is hardcoded for legacy but queri ed from pe rsistence mapping ta ble for RE | |
1357 | * @return H ashSet con taining th e mapping set: ("ggg g,eeee", v alue) for legacy, (f ieldName, value) oth erwise | |
1358 | * / | |
1359 | pr ivate Hash Set<DicomM ap> getMov ePropertyM appingSet( ) | |
1360 | { | |
1361 | // FUTURE Nee d to find out if thi s method e ven gets c alled. I do not thi nk so. If not, | |
1362 | // remove i t. | |
1363 | ||
1364 | // C reate the HashSet | |
1365 | Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>(); | |
1366 | ||
1367 | // feed s tatic tabl e for lega cy Study R oot Study level move (could be in M pers istence!!! !) | |
1368 | hash Set.add(ne w MockDico mMap("0008 ,0052", nu ll, "MoveR equest", " Level", 1) ); // DA - > String | |
1369 | hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "MoveR equest", " InstanceUI D", 1)); / / UI -> St ring(64) | |
1370 | ||
1371 | retu rn hashSet ; | |
1372 | } | |
1373 | ||
1374 | privat e void san itizeHISCh anges(Hash Map<String , String> HISChanges ){ | |
1375 | // 1. if (00 32,1064) i s present in HISchan ges and (0 008,1032) is present in the Da taSet, | |
1376 | // copy (003 2,1064) to (0008,103 2) in HIS Changes | |
1377 | if (HISChang es.contain sKey("0032 ,1064 0008 ,0100") && (dataSet. containsEl ement(DCM. E_PROCEDUR E_CODE_SEQ UENCE))) { | |
1378 | Stri ng value = (String)H ISChanges. get("0032, 1064 0008, 0100"); | |
1379 | HISC hanges.put ("0008,103 2 0008,010 0", value) ; | |
1380 | valu e = (Strin g)HISChang es.get("00 32,1064 00 08,0102"); | |
1381 | HISC hanges.put ("0008,103 2 0008,010 2", value) ; | |
1382 | valu e = (Strin g)HISChang es.get("00 32,1064 00 08,0104"); | |
1383 | HISC hanges.put ("0008,103 2 0008,010 4", value) ; | |
1384 | } | |
1385 | } | |
1386 | ||
1387 | privat e String f ormatStrin gValue(Str ing tag, S tring valu e){ | |
1388 | St ring forma ttedValue = value; | |
1389 | ||
1390 | tr y{ | |
1391 | Attribut eTag dicom Tag = new AttributeT ag(tag); | |
1392 | short vr = DicomDa taDictiona ry.getElem entVR(dico mTag); | |
1393 | String v m = DicomD ataDiction ary.getEle mentVM(dic omTag); | |
1394 | if(value == null){ | |
1395 | retu rn value; | |
1396 | } | |
1397 | ||
1398 | if(vr == DicomData Dictionary .getVR("PN ")){ | |
1399 | //Ch eck if ele ment allow s for mult iple value s. | |
1400 | if(v m.equals(" 1")){ | |
1401 | //If only 1 value al lowed, str ip off eve rything el se. | |
1402 | String[] v alues = v alue.split ("\\\\", 2 ); | |
1403 | formattedV alue = val ues[0]; | |
1404 | } | |
1405 | else { | |
1406 | formattedV alue = val ue; | |
1407 | } | |
1408 | //Co nvert comm as to cara ts to meet DICOM sta ndard. | |
1409 | form attedValue = formatt edValue.re place(',', '^'); | |
1410 | } | |
1411 | else{ | |
1412 | form attedValue = value; | |
1413 | } | |
1414 | } | |
1415 | ca tch(DCSExc eption dcs e){ | |
1416 | logger.w arn(this.g etClass(). getName()+ ": Warning thrown wh ile format ting Strin g Value.") ; | |
1417 | return v alue; | |
1418 | } | |
1419 | re turn forma ttedValue; | |
1420 | } | |
1421 | ||
1422 | pr ivate Stri ng getStri ngValueFro mElement(S tring tagN ame, Strin g defaultV alue) | |
1423 | { | |
1424 | Stri ng value = ""; | |
1425 | try | |
1426 | { | |
1427 | // Ext ract value s from DIC OM data se t | |
1428 | value = dataSet. getElement StringValu e(new Attr ibuteTag(t agName), d efaultValu e); | |
1429 | if ((v alue!=null ) && !valu e.isEmpty( )) | |
1430 | value = value.trim (); // tak e out lead ing and tr ailing whi tespaces | |
1431 | } | |
1432 | catc h (DCSExce ption dcse ) | |
1433 | { | |
1434 | logger.w arn(dcse.g etMessage( )+ "; Defa ultValue ( " + ((defa ultValue== null)?"nul l":default Value) + " ) used."); | |
1435 | return d efaultValu e; | |
1436 | } | |
1437 | ||
1438 | retu rn removeC ontrolChar acters(val ue); | |
1439 | } | |
1440 | ||
1441 | // This code replaces the loop o ver each c har found in the ori ginal code ... | |
1442 | pr ivate Stri ng removeC ontrolChar acters(Str ing string ToClean) | |
1443 | { | |
1444 | Stri ng CONTROL _CHARACTER _REGEX = " \\p{Cntrl} "; | |
1445 | ||
1446 | if ( stringToCl ean != nul l) | |
1447 | { | |
1448 | return stringToC lean.repla ceAll(CONT ROL_CHARAC TER_REGEX, ""); | |
1449 | } | |
1450 | else | |
1451 | { | |
1452 | return null; | |
1453 | } | |
1454 | } | |
1455 | ||
1456 | pu blic boole an isRadia tionDoseSt ructuredRe port() | |
1457 | { | |
1458 | retu rn getSOPC lass().equ als(RADIAT ION_DOSE_S OP_CLASS_U ID); | |
1459 | } | |
1460 | ||
1461 | pu blic List< Dose> getD ose() | |
1462 | { | |
1463 | RDSR Processor processor = new RDSR Processor( this); | |
1464 | ||
1465 | retu rn process or.getDose (getSOPIns tance()); | |
1466 | } | |
1467 | ||
1468 | } |
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