4298. EPMO Open Source Coordination Office Redaction File Detail Report

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4298.1 Files compared

#	Location	File	Last Modified
1			Fri Jun 9 19:51:26 2017 UTC
2	eHealth_Exch (eHealth Exchange Enhancements) Build 3 docs & code_May_2017.zip\VAP_CIF_CODE0502.zip\VAP_CIF_CODE0502\VAP_CIF_CODE0502\nvap-web\src\main\java\gov\va\nvap\web\patient	PatientDetails.java	Fri Apr 21 20:15:58 2017 UTC

4298.2 Comparison summary

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Removed	0	0

4298.3 Comparison options

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Character case	Differences in character case are significant
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4298.4 Active regular expressions

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4298.5 Comparison detail

				1		package go v.va.nvap. web.patien t;
				2
				3		import gov .va.nvap.c ommon.tran sformer.Tr ansformerE xception;
				4		import gov .va.nvap.c ommon.vali dation.Ass ert;
				5		import gov .va.nvap.c ommon.vali dation.Nul lChecker;
				6		import gov .va.nvap.c ommon.xpat h.XPathExc eption;
				7		import gov .va.nvap.p rivacy.Con sentDirect iveOptOutR easonType;
				8		import gov .va.nvap.p rivacy.Con sentDirect iveReferen ceType;
				9		import gov .va.nvap.p rivacy.Con sentType;
				10		import gov .va.nvap.p rivacy.Org anizationT ype;
				11		import gov .va.nvap.s ervice.ada pter.doc.A dapterExce ption;
				12		import gov .va.nvap.s ervice.pdq .Facility;
				13		import gov .va.nvap.s ervice.pdq .PatientCo rrelations Query;
				14		import gov .va.nvap.s ervice.pdq .PatientCo rrelations Response;
				15		import gov .va.nvap.s ervice.pdq .PatientDe mographics ;
				16		import gov .va.nvap.s ervice.pdq .PatientDe mographics Query;
				17		import gov .va.nvap.s ervice.pdq .PatientDe mographics Response;
				18		import gov .va.nvap.s ervice.pdq .PdqExcept ion;
				19		import gov .va.nvap.s ervice.pdq .PdqServic e;
				20		import gov .va.nvap.s ervice.pdq .RemovePat ientCorrel ationReque st;
				21		import gov .va.nvap.s vc.consent mgmt.jpa.C onsentDire ctiveJpaCo ntroller;
				22		import gov .va.nvap.s vc.consent mgmt.stub. adapter.an nounce.dat a.Announce ment;
				23		import gov .va.nvap.s vc.consent mgmt.stub. adapter.an nounce.dat a.PatientA nnouncer;
				24		import gov .va.nvap.s vc.consent mgmt.stub. dao.DelayR easonDAO;
				25		import gov .va.nvap.s vc.consent mgmt.stub. dao.Delaye dConsentDA O;
				26		import gov .va.nvap.s vc.consent mgmt.stub. dao.Letter TypeDAO;
				27		import gov .va.nvap.s vc.consent mgmt.stub. dao.MailLo gDAO;
				28		import gov .va.nvap.s vc.consent mgmt.stub. dao.MailNo tification DAO;
				29		import gov .va.nvap.s vc.consent mgmt.stub. dao.MailTe mplateDAO;
				30		import gov .va.nvap.s vc.consent mgmt.stub. data.Conse ntDirectiv e;
				31		import gov .va.nvap.s vc.consent mgmt.stub. data.Delay Reason;
				32		import gov .va.nvap.s vc.consent mgmt.stub. data.Delay edConsent;
				33		import gov .va.nvap.s vc.consent mgmt.stub. data.MailL og;
				34		import gov .va.nvap.s vc.consent mgmt.stub. data.MailN otificatio n;
				35		import gov .va.nvap.w eb.consent .audit.Aud itedConsen tEx;
				36		import gov .va.nvap.w eb.consent .audit.dao .AuditedCo nsentDAO;
				37		import gov .va.nvap.w eb.consent .comment.C onsentComm ent;
				38		import gov .va.nvap.w eb.consent .comment.C onsentComm entDAO;
				39		import gov .va.nvap.w eb.helper. document.D ocumentHel per;
				40		import gov .va.nvap.w eb.helper. document.M ediaType;
				41		import gov .va.nvap.w eb.helper. document.R epresentat ionType;
				42		import gov .va.nvap.w eb.helper. facility.F acilityHel per;
				43		import gov .va.nvap.w eb.helper. privacy.Co nsentManag ementHelpe r;
				44		import gov .va.nvap.w eb.user.Us erHelper;
				45		import gov .va.nvap.w eb.util.Co nstants;
				46		import gov .va.nvap.w eb.util.DA SUtil;
				47		import gov .va.nvap.w eb.util.da te.DateUti l;
				48		import gov .va.nvap.w eb.util.fi le.FileUpl oadUtil;
				49		import gov .va.nvap.w eb.util.fi le.PdfGene rator;
				50		import jav a.io.ByteA rrayInputS tream;
				51		import jav a.io.ByteA rrayOutput Stream;
				52		import jav a.io.IOExc eption;
				53		import jav a.io.Input Stream;
				54		import jav a.io.Input StreamRead er;
				55		import jav a.io.Reade r;
				56		import jav a.io.Unsup portedEnco dingExcept ion;
				57		import jav a.net.URL;
				58		import jav a.text.Par seExceptio n;
				59		import jav a.text.Sim pleDateFor mat;
				60		import jav a.util.Arr ayList;
				61		import jav a.util.Arr ays;
				62		import jav a.util.Col lection;
				63		import jav a.util.Col lections;
				64		import jav a.util.Com parator;
				65		import jav a.util.Dat e;
				66		import jav a.util.Has hMap;
				67		import jav a.util.Lis t;
				68		import jav a.util.Map ;
				69		import jav a.util.Sca nner;
				70		import jav a.util.log ging.Level ;
				71		import jav a.util.log ging.Logge r;
				72		import jav ax.ejb.EJB ;
				73		import jav ax.servlet .ServletEx ception;
				74		import jav ax.servlet .ServletOu tputStream ;
				75		import jav ax.servlet .http.Http ServletReq uest;
				76		import jav ax.servlet .http.Http ServletRes ponse;
				77		import jav ax.servlet .http.Http Session;
				78		import org .apache.co mmons.file upload.Fil eItem;
				79		import org .apache.co mmons.io.I OUtils;
				80		import sta tic org.ap ache.commo ns.lang.St ringEscape Utils.esca peXml;
				81		import org .apache.co mmons.logg ing.Log;
				82		import org .apache.co mmons.logg ing.LogFac tory;
				83		import org .json.JSON Exception;
				84		import org .json.JSON Object;
				85		import web logic.net. http.Https URLConnect ion;
				86
				87		/**
				88		* Get the detailed view of th e patient.
				89		*
				90		* @author Asha Amri traj
				91		* @author Irakli Ka kushadze
				92		* @author Zack Pete rson
				93		*/
				94		public cla ss Patient Details ex tends
				95		gov. va.nvap.we b.app.Resp onseDispat cherHttpSe rvlet {
				96		st atic priva te final L og LOG = L ogFactory. getLog(Pat ientDetail s.class);
				97
				98		/* *
				99		* Serial UI D.
				100		* /
				101		pr ivate stat ic final l ong serial VersionUID = 9603553 8957225940 3L;
				102
				103		privat e static f inal int b ufferSize = 8192;
				104
				105		/* *
				106		* Announce patients t o the NwHI N.
				107		* /
				108		@E JB(beanInt erface = P atientAnno uncer.clas s, mappedN ame = "Pat ientAnnoun cer")
				109		pr ivate Pati entAnnounc er patient Announcer;
				110		/* *
				111		* Patient D emographic s Service to get the demograph ics and co rrelations
				112		* from the MPI.
				113		* /
				114		@E JB(beanInt erface = P dqService. class, map pedName = "PdqServic e")
				115		Pd qService p dqService;
				116
				117		/* *
				118		* Announce is called when the u ser clicke d on Annou nce on the Patient
				119		* Details p age.
				120		*
				121		* @pa ram reques t http ser vlet reque st
				122		* @pa ram respon se http se rvlet resp onse
				123		*
				124		* @th rows javax .servlet.S ervletExce ption
				125		* @th rows java. io.IOExcep tion
				126		* /
				127		pu blic void announce(f inal HttpS ervletRequ est reques t,
				128		final HttpServle tResponse response) throws Ser vletExcept ion,
				129		IOExce ption {
				130		// G et the ICN
				131		fina l String i cn = reque st.getPara meter("icn ");
				132		Asse rt.assertN otEmpty(ic n, "ICN ca nnot be nu ll!");
				133		if ( this.valid ate(reques t, respons e, "announ ce")) {
				134		PatientA nnounceThr ead announ ceThread =
				135		new Patien tAnnounceT hread("ann ouncerThre ad");
				136		announce Thread.set CmsHelper( this.getCm sHelper()) ;
				137		announce Thread.set FacilityHe lper(this. getFacilit yHelper()) ;
				138		announce Thread.set PatientAnn ouncer(thi s.patientA nnouncer);
				139		announce Thread.set PatientIcn (icn);
				140		announce Thread.set PdqService (this.pdqS ervice);
				141		announce Thread.set RemoteUser Id(UserHel per.getUse rName(requ est));
				142		announce Thread.sta rt();
				143
				144		final Ht tpSession session = request.ge tSession(f alse);
				145		session. setAttribu te("messag e", "Patie nt announc ement star ted. You m ay move on to anothe r announce ment or ac tivity.");
				146
				147		this.for ward(reque st, respon se, "searc h");
				148		} el se {
				149		// Val idation
				150		this.f orward(req uest, resp onse, "val idate");
				151		}
				152		}
				153
				154		public void dela yAuthoriza tion(final List<File Item> file Items,
				155		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				156		throws ServletEx ception, I OException {
				157
				158		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				159
				160		// G et the fie lds
				161		fina l Map<Stri ng, String > formFiel ds = FileU ploadUtil
				162		.getForm Fields(fil eItems);
				163
				164		Lo ng consent Id = null;
				165
				166		// Get all th e delay re asons
				167		Co llection<D elayReason > delayRea sonCollect ion = this .getDelayR easonDAO() .findAll() ;
				168
				169		// Get the de lay reason (s) select ed
				170		fi nal ArrayL ist<String > delayRea sons = new ArrayList <String>(A rrays.asLi st(formFie lds.get("c ollectedRe asons").sp lit(","))) ;
				171
				172		Ar rayList<De layReason> theseReas ons = new ArrayList< DelayReaso n>();
				173
				174		// Convert th e list of delay reas on id stri ngs into D elayReason objects
				175		fo r (DelayRe ason reaso n : delayR easonColle ction) {
				176		if (dela yReasons.c ontains(re ason.getDe layReasonI d().toStri ng())) {
				177		thes eReasons.a dd(reason) ;
				178		}
				179		}
				180
				181		// G et other f ields from the form.
				182		fina l String c onsentType = formFie lds.get("c onsentType ");
				183		fi nal String comments = formFiel ds.get("co mments");
				184		Stri ng userFac ilityStati onId = for mFields.ge t("userFac ility");
				185
				186		if (this.val idate(form Fields, re quest, res ponse, "de layAuthori zation")) {
				187
				188		final String use rId = User Helper.get UserName(r equest);
				189
				190		if (Nu llChecker. isEmpty(us erFacility StationId) ) {
				191		userFaci lityStatio nId = this .getFacili tyHelper()
				192		.g etFaciltyS tationIdBy UserId(use rId);
				193		}
				194
				195		PatientD emographic s patientD emographic s = (Patie ntDemograp hics)sessi on.getAttr ibute("pat ientDemogr aphics");
				196
				197		gov.va.n vap.svc.co nsentmgmt. stub.data. ConsentTyp e consentT ypeObject = this.get ConsentDir ectiveJpaC ontroller( )
				198		.fin dConsentTy peByName(c onsentType );
				199		Date tod ay = new D ate();
				200		DelayedC onsent da = new Dela yedConsent ();
				201		da.setDa teAdded(to day);
				202		da.setDe layReasonC ollection( theseReaso ns);
				203		da.setPa tientFirst Name(patie ntDemograp hics.getFi rstName()) ;
				204		da.setPa tientLastN ame(patien tDemograph ics.getLas tName());
				205		da.setPa tientMiddl eName(pati entDemogra phics.getM iddleName( ));
				206		da.setPa tientSsn(p atientDemo graphics.g etSsn());
				207		da.setPa tientIen(( String)ses sion.getAt tribute("p atientIen" ));
				208		da.setCo nsentTypeI d(consentT ypeObject) ;
				209		da.setSt ationNumbe r(userFaci lityStatio nId);
				210		da.setUs erId(userI d);
				211
				212		try {
				213		cons entId = th is.getDela yedConsent DAO().crea te(da);
				214		} catch (Exception ex) {
				215		Logg er.getLogg er(Patient Details.cl ass.getNam e()).log(L evel.SEVER E, null, e x);
				216		}
				217
				218		//Handle comments
				219		if(!Null Checker.is Empty(comm ents)) {
				220		Cons entComment comment = new Conse ntComment( );
				221		comm ent.setCom ments(comm ents);
				222		comm ent.setCon sentType(c onsentType );
				223		comm ent.setUse rId(userId );
				224		comm ent.setDat eAdded(new Date());
				225		comm ent.setDel ayedConsen tId(consen tId);
				226
				227		this .getConsen tCommentDA O().create (comment);
				228		}
				229		// Succe ss
				230		this.for ward(reque st, respon se, "succe ss");
				231		} el se {
				232		// Val idate
				233		this.f orward(req uest, resp onse, "val idate");
				234		}
				235
				236		}
				237
				238		public ConsentDi rectiveJpa Controller getConsen tDirective JpaControl ler() {
				239		fi nal Consen tDirective JpaControl ler consen tDirective JpaControl ler = this .getBean(" consentDir ectiveJpaC ontroller" ,
				240		ConsentD irectiveJp aControlle r.class);
				241		re turn conse ntDirectiv eJpaContro ller;
				242		}
				243
				244		/* *
				245		* Get the c onsent man agement he lper from Spring.
				246		* /
				247		pu blic Conse ntManageme ntHelper g etCmsHelpe r() {
				248		fina l ConsentM anagementH elper cmsH elper = th is.getBean ("cmsHelpe r",
				249		ConsentM anagementH elper.clas s);
				250		retu rn cmsHelp er;
				251		}
				252
				253		public DelayedCo nsentDAO g etDelayedC onsentDAO( ) {
				254		fi nal Delaye dConsentDA O delayedC onsentDAO = this.get Bean("Dela yedConsent DAO", Dela yedConsent DAO.class) ;
				255		re turn delay edConsentD AO;
				256		}
				257
				258		public DelayReas onDAO getD elayReason DAO() {
				259		fi nal DelayR easonDAO d elayReason DAO = this .getBean(" DelayReaso nDAO", Del ayReasonDA O.class);
				260		re turn delay ReasonDAO;
				261		}
				262
				263		/* *
				264		* Get the d ocument he lper from Spring.
				265		* /
				266		pu blic Docum entHelper getDocumen tHelper() {
				267		retu rn this.ge tBean("ada pterDocume ntHelper", DocumentH elper.clas s);
				268		}
				269
				270		/* *
				271		* Get the f acility he lper from Spring.
				272		* /
				273		pu blic Facil ityHelper getFacilit yHelper() {
				274		fina l Facility Helper fac ilityHelpe r = this.g etBean("fa cilityHelp er",
				275		Facility Helper.cla ss);
				276		retu rn facilit yHelper;
				277		}
				278
				279		public ConsentCo mmentDAO g etConsentC ommentDAO( ) {
				280		fi nal Consen tCommentDA O consentC ommentDAO = this.get Bean("cons entComment DAO", Cons entComment DAO.class) ;
				281
				282		re turn conse ntCommentD AO;
				283		}
				284
				285		public PatientCo mmentDAO g etPatientC ommentDAO( ) {
				286		fi nal Patien tCommentDA O patientC ommentDAO = this.get Bean("pati entComment DAO", Pati entComment DAO.class) ;
				287
				288		re turn patie ntCommentD AO;
				289		}
				290
				291		public AuditedCo nsentDAO g etAuditedC onsentDAO( ) {
				292		fi nal Audite dConsentDA O auditedC onsentDAO = this.get Bean("audi tedConsent DAO", Audi tedConsent DAO.class) ;
				293
				294		re turn audit edConsentD AO;
				295		}
				296
				297		public LetterTyp eDAO getLe tterTypeDA O() {
				298		fi nal Letter TypeDAO le tterTypeDA O = this.g etBean("le tterTypeDA O", Letter TypeDAO.cl ass);
				299
				300		re turn lette rTypeDAO;
				301		}
				302
				303		public MailNotif icationDAO getMailNo tification DAO() {
				304		fi nal MailNo tification DAO mailNo tification DAO = this .getBean(" MailNotifi cationDAO" , MailNoti ficationDA O.class);
				305
				306		re turn mailN otificatio nDAO;
				307		}
				308
				309		public MailLogDA O getMailL ogDAO() {
				310		fi nal MailLo gDAO mailL ogDAO = th is.getBean ("MailLogD AO", MailL ogDAO.clas s);
				311
				312		re turn mailL ogDAO;
				313		}
				314
				315		public MailTempl ateDAO get MailTempla teDAO() {
				316		fi nal MailTe mplateDAO mailTempla teDAO = th is.getBean ("MailTemp lateDAO", MailTempla teDAO.clas s);
				317
				318		re turn mailT emplateDAO ;
				319		}
				320
				321		/* *
				322		* Show the consent ma nagement h istory.
				323		*
				324		* @pa ram reques t http ser vlet reque st
				325		* @pa ram respon se http se rvlet resp onse
				326		*
				327		* @th rows javax .servlet.S ervletExce ption
				328		* @th rows java. io.IOExcep tion
				329		* /
				330		pu blic void history(fi nal HttpSe rvletReque st request ,
				331		final HttpServle tResponse response) throws Ser vletExcept ion,
				332		IOExce ption {
				333		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				334		// D ocument ty pe = OPT-I N/OPT-OUT
				335		fina l String d ocumentTyp e = reques t.getParam eter("docu mentType") ;
				336		fina l String c onsentDirI d = reques t.getParam eter("cons entDirId") ;
				337
				338		Asse rt.assertN otEmpty(do cumentType , "Documen t Type can not be nul l!");
				339		fina l String d ocument = this.getCm sHelper(). retrieveDo cument(
				340		consentD irId, docu mentType);
				341		// S et the doc ument for further qu eries
				342		sess ion.setAtt ribute("do cument", d ocument);
				343		sess ion.setAtt ribute("do cumentType ", documen tType);
				344		sess ion.setAtt ribute("co nsentDirId ", consent DirId);
				345		// R eturn the PDF
				346		try {
				347		if ( D ASUtil.isD ASDocument (document) ){
				348		// G et from DA S and show
				349		// C ommented o ut code th at should only be in voked
				350		// i n dev/test environme nt anyway to get aro und
				351		// f ixing code that will not be us ed in prod uction.
				352		/*if ( C onstants.i sDasUseMoc kRetrieve( ) ){
				353		//mockGetD ocumentFro mDAS(respo nse.getOut putStream( ));
				354		}else{*/
				355		getDocumen tFromDAS(r esponse.ge tOutputStr eam(), doc ument);
				356		//}
				357		}else{
				358		final St ring attac hment = th is.getDocu mentHelper ()
				359		.g etPrivacyC onsentDire ctiveAttac hment(docu ment);
				360		if (Null Checker.is NotEmpty(a ttachment) ) {
				361		this.getDo cumentHelp er()
				362		.wri teAttachme ntToStream (
				363		response ,
				364		attachme nt,
				365		MediaTyp e.fromValu e(this.get DocumentHe lper()
				366		.g etPrivacyC onsentDire ctiveMedia Type(
				367		docume nt)),
				368		Represen tationType .B64);
				369		} else {
				370		session.se tAttribute ("informat ionMessage ",
				371		"The re are no attachment s associat ed with th is consent directive .");
				372		this.forwa rd(request , response , "noattac hment");
				373		}
				374		}
				375		} ca tch (final Transform erExceptio n ex) {
				376		throw new Servle tException (ex);
				377		} ca tch (final XPathExce ption ex) {
				378		throw new Servle tException (ex);
				379		}
				380
				381		}
				382
				383		/* *
				384		* User sele cted opt-i n in the P atient det ails page.
				385		*
				386		* @pa ram fileIt ems list o f uploaded file item s
				387		* @pa ram reques t http ser vlet reque st
				388		* @pa ram respon se http se rvlet resp onse
				389		*
				390		* @th rows javax .servlet.S ervletExce ption
				391		* @th rows java. io.IOExcep tion
				392		* /
				393		pu blic void optIn(fina l List<Fil eItem> fil eItems,
				394		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				395		throws ServletEx ception, I OException {
				396		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				397
				398		// G et the fie lds
				399		fina l Map<Stri ng, String > formFiel ds = FileU ploadUtil
				400		.getForm Fields(fil eItems);
				401
				402		// G et the upl oaded file s
				403		fina l List<Fil eItem> fil esUploaded = FileUpl oadUtil
				404		.getFile sUploaded( fileItems) ;
				405
				406		St ring conse ntId = "";
				407
				408		// G et the icn
				409		fina l String i cn = formF ields.get( "icn");
				410		fina l String c onsentType = formFie lds.get("c onsentType ");
				411		fina l String p urposeOfUs e = formFi elds.get(" purposeOfU se");
				412		fina l String e xpirationY ears = for mFields.ge t("expirat ionYears") ;
				413		fina l String c omments = formFields .get("comm ents");
				414		// G et the org anizations selected by the use r
				415		fina l String n ewRight = formFields .get("newR ight");
				416		// G et the dat e signed
				417		fina l String s ignatureDa teStr = fo rmFields.g et("signat ureDate");
				418		Stri ng userFac ilityStati onId = for mFields.ge t("userFac ility");
				419
				420		Stri ng[] organ izationNum bers = nul l;
				421		if ( NullChecke r.isNotEmp ty(newRigh t)) {
				422		organi zationNumb ers = newR ight.split (",");
				423
				424		}
				425
				426		if ( this.valid ate(formFi elds, requ est, respo nse, "optI n")) {
				427		// Get the date after vali dation
				428		final Date signa tureDate = DateUtil
				429		.parseDate MMddyyyy(s ignatureDa teStr);
				430		// May be go to M PI
				431		final PatientDem ographics patientDem ographics = (Patient Demographi cs) sessio n
				432		.getAttrib ute("patie ntDemograp hics");
				433		// Get the files uploaded
				434		final String use rId = User Helper.get UserName(r equest);
				435		// Do it as part of the GU I if possi ble
				436
				437		if (Nu llChecker. isEmpty(us erFacility StationId) ) {
				438		userFaci lityStatio nId = this .getFacili tyHelper()
				439		.g etFaciltyS tationIdBy UserId(use rId);
				440		}
				441		if ("N wHIN Organ ization Re striction Modificati on"
				442		.equals(co nsentType) ) {
				443		this.get CmsHelper( ).optOut(
				444		ic n,
				445		pa tientDemog raphics,
				446		fi lesUploade d,
				447		"R evoked",
				448		us erId,
				449		us erFacility StationId,
				450		si gnatureDat e,
				451		Co nsentType. NW_HIN_ORG ANIZATION_ RESTRICTIO N_REVOCATI ON
				452		.value (), purpos eOfUse);
				453		consentI d = this.g etCmsHelpe r()
				454		.o ptIn(icn,
				455		organi zationNumb ers,
				456		patien tDemograph ics,
				457		filesU ploaded,
				458		userId ,
				459		userFa cilityStat ionId,
				460		signat ureDate,
				461		Consen tType.NW_H IN_ORGANIZ ATION_REST RICTION_AU THORIZATIO N
				462		.value(), purposeOfU se, expira tionYears) ;
				463
				464		} else {
				465		// Call opt-in wit h files up loaded
				466		consentI d = this.g etCmsHelpe r().optIn( icn, organ izationNum bers,
				467		pa tientDemog raphics, f ilesUpload ed, userId ,
				468		us erFacility StationId, signature Date, cons entType,
				469		pu rposeOfUse , expirati onYears);
				470		}
				471
				472		// Updat e correspo nding dela yed author ization (i f one exis ts) after opt-in
				473		boolean delayedCon sentUpdate d = false;
				474		if (cons entType.eq uals(Conse ntType.NW_ HIN_AUTHOR IZATION.va lue()) \|\| consentTyp e.equals(C onsentType .SSA_AUTHO RIZATION.v alue())) {
				475		List <DelayedCo nsent> del ayedConsen ts = this. getDelayed ConsentDAO ().findByP atientIen( icn);
				476		if ( delayedCon sents.size () > 0) {
				477		gov.va.nva p.svc.cons entmgmt.st ub.data.Co nsentType consentTyp eObject = this.getCo nsentDirec tiveJpaCon troller(). findConsen tTypeByNam e(consentT ype);
				478		if (consen tTypeObjec t != null) {
				479		for (De layedConse nt dc : de layedConse nts) {
				480		lo ng delayed Id = dc.ge tConsentTy peId().get ConsentTyp eId();
				481		if ((consent TypeObject .getConsen tTypeId() == delayed Id) && dc. getStatus( ).equals(" PENDING")) {
				482		delayedC onsentUpda ted = true ;
				483		try {
				484		dc.s etStatus(" APPROVED") ;
				485		dc.s etResoluti onDate(new Date());
				486		this .getDelaye dConsentDA O().update (dc);
				487
				488		//St ore any co mments wit h the dela yed author zation
				489		if(! NullChecke r.isEmpty( comments)) {
				490		ConsentCom ment comme nt = new C onsentComm ent();
				491		comment.se tComments( comments);
				492		comment.se tConsentTy pe(consent Type);
				493		comment.se tUserId(us erId);
				494		comment.se tDateAdded (new Date( ));
				495		comment.se tDelayedCo nsentId(dc .getDelaye dConsentId ());
				496
				497		this.getCo nsentComme ntDAO().cr eate(comme nt);
				498		}
				499		} catch (Exception ex) {
				500		Logg er.getLogg er(Patient Details.cl ass.getNam e()).log(L evel.SEVER E, null, e x);
				501		}
				502		}
				503		}
				504		}
				505		}
				506		}
				507		if (!del ayedConsen tUpdated) {
				508		//Ha ndle comme nts normal ly if not approving a delayed authorizat ion
				509		if(! NullChecke r.isEmpty( comments)) {
				510		ConsentCom ment comme nt = new C onsentComm ent();
				511		comment.se tComments( comments);
				512		comment.se tConsentTy pe(consent Type);
				513		//There is no Restri ction Modi fication c onsent typ e so we ne ed to chan ge it to A uthorizati on in orde r to be
				514		//populate d correctl y in the j sp.
				515		if (consen tType.equa ls("NwHIN Organizati on Restric tion Modif ication")) {
				516		commen t.setConse ntType(Con sentType.N W_HIN_ORGA NIZATION_R ESTRICTION _AUTHORIZA TION.value ());
				517		}
				518		comment.se tUserId(us erId);
				519		comment.se tDateAdded (new Date( ));
				520		comment.se tConsentId (Long.valu eOf(consen tId));
				521
				522		this.getCo nsentComme ntDAO().cr eate(comme nt);
				523		}
				524		}
				525		// Suc cess
				526		this.f orward(req uest, resp onse, "suc cess");
				527		// ann ounce(requ est, respo nse);
				528		} el se {
				529		// Val idate
				530		this.f orward(req uest, resp onse, "val idate");
				531		}
				532		}
				533
				534		/* *
				535		* The user selected o pt-out fro m the Pati ent detail s page.
				536		*
				537		* @pa ram reques t http ser vlet reque st
				538		* @pa ram respon se http se rvlet resp onse
				539		*
				540		* @th rows javax .servlet.S ervletExce ption
				541		* @th rows java. io.IOExcep tion
				542		* /
				543		pu blic void optOut(fin al List<Fi leItem> fi leItems,
				544		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				545		throws ServletEx ception, I OException {
				546		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				547
				548		// G et the fie lds
				549		fina l Map<Stri ng, String > formFiel ds = FileU ploadUtil
				550		.getForm Fields(fil eItems);
				551		// G et the upl oaded file s
				552		fina l List<Fil eItem> fil esUploaded = FileUpl oadUtil
				553		.getFile sUploaded( fileItems) ;
				554		fina l String c onsentType = formFie lds.get("c onsentType ");
				555
				556		Stri ng consent Id = "";
				557
				558		// G et the icn
				559		fina l String i cn = formF ields.get( "icn");
				560		// G et the opt out reaso n
				561		fina l String r eason = fo rmFields.g et("reason ");
				562		Stri ng signatu reDateStr = formFiel ds.get("si gnatureDat e");
				563		Stri ng comment s = formFi elds.get(" comments") ;
				564		Stri ng decease dDateStr = formField s.get("dec easedDate" );
				565		Stri ng userFac ilityStati onId = for mFields.ge t("userFac ility");
				566		fina l String p urposeOfUs e = formFi elds.get(" purposeOfU se");
				567		fina l String e xpiryYears = formFie lds.get("e xpirationY ears");
				568		if ( ConsentDir ectiveOptO utReasonTy pe.PATIENT _DECEASED. value().eq uals(
				569		reason)) {
				570		signat ureDateStr = decease dDateStr;
				571		}
				572
				573		if ( this.valid ate(formFi elds, requ est, respo nse, "optO ut")) {
				574		final Date signa tureDate = DateUtil
				575		.parseDate MMddyyyy(s ignatureDa teStr);
				576		// May be go to M PI
				577		final PatientDem ographics patientDem ographics = (Patient Demographi cs) sessio n
				578		.getAttrib ute("patie ntDemograp hics");
				579		// Get the files uploaded
				580		final String use rId = User Helper.get UserName(r equest);
				581		if (Nu llChecker. isEmpty(us erFacility StationId) ) {
				582		userFaci lityStatio nId = this .getFacili tyHelper()
				583		.g etFaciltyS tationIdBy UserId(use rId);
				584		}
				585
				586		// Opt -out witho ut files
				587		consen tId = this .getCmsHel per().optO ut(icn, pa tientDemog raphics, f ilesUpload ed,
				588		reason, us erId, user FacilitySt ationId, s ignatureDa te,
				589		consentTyp e, purpose OfUse);
				590		if (Co nsentDirec tiveOptOut ReasonType .NEW_AUTHO RIZATION.v alue()
				591		.equals(re ason)) {
				592		if (Cons entType.NW _HIN_REVOC ATION.valu e().equals (consentTy pe)) {
				593		consentId = this.get CmsHelper( ).optIn(ic n, null, p atientDemo graphics,
				594		null , userId, userFacili tyStationI d, signatu reDate,
				595		Cons entType.NW _HIN_AUTHO RIZATION.v alue(),
				596		purp oseOfUse, expiryYear s);
				597		} else i f (Consent Type.SSA_R EVOCATION. value().eq uals(
				598		co nsentType) ) {
				599		consentId = this.get CmsHelper( ).optIn(ic n, null, p atientDemo graphics,
				600		null , userId, userFacili tyStationI d, signatu reDate,
				601		Cons entType.SS A_AUTHORIZ ATION.valu e(),
				602		purp oseOfUse, expiryYear s);
				603		}
				604		}
				605
				606		//hand le comment s
				607		if(!Nu llChecker. isEmpty(co mments)) {
				608		Co nsentComme nt comment = new Con sentCommen t();
				609		co mment.setC omments(co mments);
				610		co mment.setC onsentType (consentTy pe);
				611		co mment.setU serId(user Id);
				612		co mment.setD ateAdded(n ew Date()) ;
				613		co mment.setC onsentId(L ong.valueO f(consentI d));
				614
				615		th is.getCons entComment DAO().crea te(comment );
				616		}
				617
				618		// Rem ove attrib utes befor e exiting
				619		// Suc cess
				620		this.f orward(req uest, resp onse, "suc cess");
				621		} el se {
				622		// Val idate
				623		this.f orward(req uest, resp onse, "val idate");
				624		}
				625		}
				626
				627		/* *
				628		* If a syst em adminis trator nee ds to remo ve all cor relations from the M PI.
				629		*
				630		* @pa ram reques t http ser vlet reque st
				631		* @pa ram respon se http se rvlet resp onse
				632		*
				633		* @th rows javax .servlet.S ervletExce ption
				634		* @th rows java. io.IOExcep tion
				635		* /
				636		pu blic void revoke(fin al HttpSer vletReques t request,
				637		final HttpServle tResponse response) throws Ser vletExcept ion,
				638		IOExce ption {
				639		// G et the icn
				640		fina l String i cn = reque st.getPara meter("icn ");
				641		fina l String c omments = request.ge tParameter ("comments ");
				642		fina l String c onsentType = request .getParame ter("conse ntType");
				643		if ( this.valid ate(reques t, respons e, "revoke ")) {
				644		// Mak e the corr elations q uery
				645		final PatientCor relationsQ uery corre lationsQue ry = new P atientCorr elationsQu ery();
				646		correl ationsQuer y.setPatie ntId(icn);
				647		try {
				648		// Get t he correla tions resp onse
				649		final Pa tientCorre lationsRes ponse corr elationsRe sponse = t his.pdqSer vice
				650		.g etCorrelat edFaciliti es(correla tionsQuery );
				651		// Get t he demogra phics
				652		final Pa tientDemog raphicsQue ry demogra phicsQuery = new Pat ientDemogr aphicsQuer y();
				653		demograp hicsQuery. setPatient Id(icn);
				654		final Pa tientDemog raphicsRes ponse demo graphicsRe sponse = t his.pdqSer vice
				655		.g etPatientD emographic s(demograp hicsQuery) ;
				656		final Pa tientDemog raphics de mographics = demogra phicsRespo nse
				657		.g etPatientD emographic s();
				658		// Get a ll the fac ilities
				659		final Li st<Facilit y> facilit ies = corr elationsRe sponse
				660		.g etFaciliti es();
				661		// For e ach NwHIN facilities other tha n DoD, cre ate a requ est to
				662		// remov e the corr elations o n the MPI.
				663		if (Null Checker.is NotEmpty(f acilities) ) {
				664		for (final Facility facility : facilitie s) {
				665		// Get the o rganizatio n
				666		fi nal Organi zationType stdOrgani zation = t his
				667		.getCm sHelper(). getOrganiz ationByNum ber(
				668		facility.g etFacility Id());
				669		// You reall y cant rem ove the Do D correlat ions
				670		if (NullChec ker.isEmpt y(stdOrgan ization)
				671		\|\| (Nu llChecker. isNotEmpty (stdOrgani zation) && stdOrgani zation
				672		.getOrgNum ber().equa ls("200DOD "))) {
				673		} else {
				674		// G et the fac ility to b e removed from the M PI
				675		// c orrelation
				676		Stri ng correla tedAssigni ngAuthorit yName = fa cility
				677		.getAssi gningAutho rityName() ;
				678		fina l String c orrelatedA ssigningAu thorityOid = stdOrga nization
				679		.getOrgO id();
				680		fina l String f irstName = demograph ics
				681		.getFirs tName();
				682		fina l String m iddleName = demograp hics
				683		.getMidd leName();
				684		fina l String l astName = demographi cs.getLast Name();
				685		fina l RemovePa tientCorre lationRequ est remove PatientCor relationRe quest = ne w RemovePa tientCorre lationRequ est();
				686		if ( NullChecke r
				687		.isEmpty (correlate dAssigning AuthorityN ame)) {
				688		correl atedAssign ingAuthori tyName = s tdOrganiza tion
				689		.getOrgNum ber();
				690		}
				691		// S et values
				692		remo vePatientC orrelation Request
				693		.setCorr elatedAssi gningAutho rityName(c orrelatedA ssigningAu thorityNam e);
				694		remo vePatientC orrelation Request
				695		.setCorr elatedAssi gningAutho rityOid(co rrelatedAs signingAut horityOid) ;
				696		remo vePatientC orrelation Request
				697		.setCorr elatedPati entId(faci lity
				698		.g etCorrelat edPatientI d());
				699		remo vePatientC orrelation Request.se tPatientId (icn);
				700		remo vePatientC orrelation Request
				701		.setPati entFirstNa me(firstNa me);
				702		remo vePatientC orrelation Request
				703		.setPati entMiddleN ame(middle Name);
				704		remo vePatientC orrelation Request
				705		.setPati entLastNam e(lastName );
				706		remo vePatientC orrelation Request.se tUserId(Us erHelper.g etUserName (request)) ;
				707		// C all the se rvice to r emove corr elations.
				708		Remo vePatientC orrelation Request r = this.pdq Service
				709		.removeP atientCorr elation(re movePatien tCorrelati onRequest) ;
				710
				711		//ha ndle comme nts
				712		if(! NullChecke r.isEmpty( comments)) {
				713		ConsentCom ment comme nt = new C onsentComm ent();
				714		comment.se tComments( comments);
				715		comment.se tConsentTy pe(consent Type);
				716		comment.se tUserId(Us erHelper.g etUserName (request)) ;
				717		comment.se tDateAdded (new Date( ));
				718		//TODO: co mment.setC onsentId(L ong.valueO f(consentI d));
				719
				720		this.getCo nsentComme ntDAO().cr eate(comme nt);
				721		}
				722		}
				723		}
				724		}
				725		} catc h (final P dqExceptio n ex) {
				726		throw ne w ServletE xception(e x);
				727		}
				728		this.f orward(req uest, resp onse, "suc cess");
				729		} el se {
				730		this.f orward(req uest, resp onse, "val idate");
				731		}
				732		}
				733		/*
				734		Method that upda tes delaye d authoriz ation upon cancelati on.
				735		*/
				736		public void canc elDelay(fi nal HttpSe rvletReque st request ,
				737		final Ht tpServletR esponse re sponse) th rows Servl etExceptio n,
				738		IOExcept ion {
				739
				740		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				741
				742		// Find the d elayed aut horization by the id sent in f rom the js p
				743		De layedConse nt dc = th is.getDela yedConsent DAO().find ByDelayedC onsentId(( Long)sessi on.getAttr ibute("del ayedConsen tId"));
				744		St ring comme nts = requ est.getPar ameter("ca ncelCommen ts");
				745
				746		// Create com ment if ap plicable
				747		if (!NullChe cker.isNul lOrEmpty(c omments)) {
				748		ConsentC omment com ment = new ConsentCo mment();
				749		comment. setComment s(comments );
				750		comment. setDateAdd ed(new Dat e());
				751		comment. setUserId( UserHelper .getUserNa me(request ));
				752		comment. setDelayed ConsentId( dc.getDela yedConsent Id());
				753		comment. setConsent Type(dc.ge tConsentTy peId().get Name());
				754		this.get ConsentCom mentDAO(). create(com ment);
				755		}
				756
				757		dc .setStatus ("CANCELED ");
				758		dc .setResolu tionDate(n ew Date()) ;
				759
				760		tr y {
				761		this.get DelayedCon sentDAO(). update(dc) ;
				762		} catch (Exc eption e) {
				763		throw ne w ServletE xception(" There was an issue u pdating th e delayed authorizat ion with i d" + dc.ge tDelayedCo nsentId()) ;
				764		}
				765
				766		th is.forward (request, response, "success") ;
				767		}
				768		/*
				769		Method that pass es attribu tes to can celDelay m ethod and calls the cancel jsp
				770		*/
				771		public void canc elDelayedA uthorizati on(final H ttpServlet Request re quest,
				772		final HttpServle tResponse response) throws Ser vletExcept ion,
				773		IOExce ption {
				774
				775		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				776
				777		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				778		fi nal long d elayedCons entId = (L ong.parseL ong(reques t.getParam eter("dela yedConsent Id")));
				779		se ssion.setA ttribute(" delayedCon sentId", d elayedCons entId);
				780		th is.forward (request,r esponse, " cancelDela y");
				781		}
				782
				783		public void prin tLetter(fi nal HttpSe rvletReque st request ,
				784		final HttpServle tResponse response) throws Ser vletExcept ion,
				785		IOExce ption {
				786
				787		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				788
				789		se ssion.remo veAttribut e("delayed Consent");
				790		se ssion.remo veAttribut e("consent ");
				791
				792		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				793		if (request. getParamet er("delaye dConsentId ") != null ) {
				794		if (requ est.getPar ameter("ss aDelay") ! = null) {
				795		sess ion.setAtt ribute("ss aDelay", t rue);
				796		}
				797		else if (request.g etParamete r("eheDela y") != nul l) {
				798		sess ion.setAtt ribute("eh eDelay", t rue);
				799		}
				800		DelayedC onsent dc = this.get DelayedCon sentDAO(). findByDela yedConsent Id(Long.pa rseLong(re quest.getP arameter(" delayedCon sentId"))) ;
				801		session. setAttribu te("delaye dConsent", dc);
				802		}
				803		el se if (req uest.getPa rameter("c onsentId") != null) {
				804		ConsentD irective c onsent = t his.getCon sentDirect iveJpaCont roller().f indConsent Directive( Long.parse Long(reque st.getPara meter("con sentId"))) ;
				805		session. setAttribu te("consen t", consen t);
				806		}
				807
				808		this .forward(r equest, re sponse, "p rintLetter ");
				809
				810		}
				811
				812		public class Con sentWrappe r {
				813
				814		pr ivate Cons entDirecti veReferenc eType norm alConsent;
				815		pr ivate Dela yedConsent delayedCo nsent;
				816		pr ivate Bool ean isRevo ked;
				817		pr ivate Stri ng user;
				818		pr ivate List <ConsentCo mment> com ments = ne w ArrayLis t<ConsentC omment>();
				819		pr ivate Bool ean hasOpt InDocument Attachment ;
				820		pr ivate Bool ean hasOpt OutDocumen tAttachmen t;
				821		pr ivate List <MailNotif ication> m ailNotific ations = n ew ArrayLi st<MailNot ification> ();
				822
				823		pu blic Conse ntWrapper( ConsentDir ectiveRefe renceType normalCons ent, boole an isRevok ed) {
				824		this.nor malConsent = normalC onsent;
				825		this.isR evoked = i sRevoked;
				826		}
				827
				828		pu blic Conse ntWrapper( DelayedCon sent delay edConsent) {
				829		this.del ayedConsen t = delaye dConsent;
				830		this.use r = delaye dConsent.g etUserId() ;
				831		}
				832
				833		pu blic Date entryDate( ) {
				834		if (norm alConsent == null) {
				835		retu rn delayed Consent.ge tDateAdded ();
				836		} else i f (isRevok ed) {
				837		retu rn normalC onsent.get OptoutTS() ;
				838		} else {
				839		retu rn normalC onsent.get OptinTS();
				840		}
				841		}
				842
				843		pu blic List< ConsentCom ment> getC omments() {
				844		return t his.commen ts;
				845		}
				846
				847		pu blic List< MailNotifi cation> ge tMailNotif ications() {
				848		return t his.mailNo tification s;
				849		}
				850
				851		pu blic Delay edConsent getDelayed Consent() {
				852		return t his.delaye dConsent;
				853		}
				854
				855		pu blic Conse ntDirectiv eReference Type getNo rmalConsen t() {
				856		return t his.normal Consent;
				857		}
				858
				859
				860		pu blic void setOptInDo cumentAtta chment(boo lean hasAt tachment) {
				861		this.has OptInDocum entAttachm ent = hasA ttachment;
				862		}
				863
				864		pu blic boole an getOptI nDocumentA ttachment( ) {
				865		return t his.hasOpt InDocument Attachment ;
				866		}
				867
				868		pu blic void hasOptOutD ocumentAtt achment(bo olean hasA ttachment) {
				869		this.has OptOutDocu mentAttach ment = has Attachment ;
				870		}
				871
				872		pu blic boole an getOptO utDocument Attachment () {
				873		return t his.hasOpt OutDocumen tAttachmen t;
				874		}
				875
				876		pu blic void setUser(St ring user) {
				877		this.use r = user;
				878		}
				879
				880		pu blic Strin g getUser( ) {
				881		return t his.user;
				882		}
				883
				884		pu blic boole an getIsRe voked(){
				885		return t his.isRevo ked;
				886		}
				887
				888		pu blic Strin g getConse ntDisplayN ame() {
				889		String d isplayName ;
				890		if (norm alConsent == null) {
				891		disp layName = delayedCon sent.getCo nsentTypeI d().getNam e();
				892		} else i f (isRevok ed) {
				893		disp layName = normalCons ent.getOpt outConsent Type().val ue();
				894		} else {
				895		disp layName = normalCons ent.getOpt inConsentT ype().valu e();
				896		}
				897		return d isplayName .replace(" NwHIN", Co nstants.ge tOrganizat ionName()) ;
				898		}
				899
				900		}
				901
				902		/**
				903		* Bas e method t hat handle s requests that don' t specify another me thod
				904		*
				905		* @pa ram reques t http ser vlet reque st
				906		* @pa ram respon se http se rvlet resp onse
				907		*
				908		* @th rows javax .servlet.S ervletExce ption
				909		* @th rows java. io.IOExcep tion
				910		*/
				911		@O verride
				912		pr otected vo id unspeci fied(final HttpServl etRequest request,
				913		final HttpServle tResponse response) throws Ser vletExcept ion,
				914		IOExce ption {
				915		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				916
				917		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				918
				919		if ( !NullCheck er.isNullO rEmpty(icn )) {
				920		// Sto re the req uest id in the sessi on
				921		this.s etRequestI d(request, response) ;
				922		try {
				923		List <ConsentWr apper> con sents = ne w ArrayLis t<ConsentW rapper>();
				924		List <Long> con sentIds = new ArrayL ist<Long>( );
				925
				926		// G et consent directive s for curr ent patien t
				927		List <ConsentDi rectiveRef erenceType > consentD irectiveRe ferences = this.getC msHelper() .getConsen tDirective History(ic n);
				928
				929		// g et CONSENT _AUDIT inf o for this patient
				930		List <Object> a uditedCons entsUnorde red = this .getAudite dConsentDA O().getRes ultsByPati entId(icn) ;
				931
				932		// m ake a copy of audite dConsentsU nordered s o that the copy will match the consentDi rectiveRef erences
				933		// a ccording t o the User Ids in aud itedConsen tsUnordere d
				934		// b ut first m ake sure t here is on e auditedC onsent for each cons entDirecti veReferenc es
				935		Arra yList<Audi tedConsent Ex> audite dConsents = new Arra yList<Audi tedConsent Ex>();
				936		for (ConsentDi rectiveRef erenceType cdr : con sentDirect iveReferen ces) {
				937		// find th e userId i n auditedC onsentsUno rdered for this cons entDirecti veReferenc e
				938		ConsentWra pper wrapp erOut = nu ll, wrappe rIn = null ;
				939		//check wh ether alre ady found optin/opto ut for thi s
				940		Boolean fo undOptIn = false;
				941		Boolean fo undOptOut = false;
				942		//check to see if co nsent is o pted out
				943		if (cdr.ge tOptoutTS( ) != null) {
				944		wrappe rOut = new ConsentWr apper(cdr, true);
				945		}else{
				946		foundO ptOut = tr ue;
				947		}
				948		wrapperIn = new Cons entWrapper (cdr, fals e);
				949		//go throu gh audits
				950		for (int i = 0; i < auditedCon sentsUnord ered.size( ); i++) {
				951		Audite dConsentEx ac = (Aud itedConsen tEx)audite dConsentsU nordered.g et(i);
				952		String consentTy pe = ac.ge tConsentTy pe();
				953		String cdrOptInC onsentType =
				954		(c dr.getOpti nConsentTy pe() != nu ll) ? cdr. getOptinCo nsentType( ).value() : "null";
				955		String cdrOptOut ConsentTyp e =
				956		(c dr.getOpto utConsentT ype() != n ull) ? cdr .getOptout ConsentTyp e().value( ) : "null" ;
				957		if (co nsentType. equals(cdr OptInConse ntType) && !foundOpt In){
				958		w rapperIn.s etUser(ac. getUserId( ));
				959		f oundOptIn= true;
				960		a uditedCons entsUnorde red.remove (i);
				961		i --;
				962		}
				963		else i f (consent Type.equal s(cdrOptOu tConsentTy pe) && !fo undOptOut && wrapper Out != nul l) {
				964		fo undOptOut = true;
				965		wr apperOut.s etUser(ac. getUserId( ));
				966		au ditedConse ntsUnorder ed.remove( i);
				967		i --;
				968		}
				969		if(fou ndOptIn && foundOptO ut){
				970		br eak;
				971		}
				972		}
				973		if(wrapper Out != nul l){
				974		consen ts.add(wra pperOut);
				975		}
				976		consents.a dd(wrapper In);
				977		consentIds .add(Long. parseLong( cdr.getCon sentDirId( )));
				978		}
				979
				980		//no w that we have the c onsent Ids for this patient, l et's get t he comment s for them
				981		if ( !consentId s.isEmpty( )) {
				982		List<Conse ntComment> comments = this.get ConsentCom mentDAO(). getComment sByConsent Ids(consen tIds);
				983		for (Conse ntComment comment : comments) {
				984		//Ther e is no Re striction Modificati on consent type so w e need to change it to Authori zation in order to b e
				985		//popu lated corr ectly in t he jsp.
				986		if (co mment.getC onsentType ().equals( "NwHIN Org anization Restrictio n Modifica tion")) {
				987		co mment.setC onsentType (ConsentTy pe.NW_HIN_ ORGANIZATI ON_RESTRIC TION_AUTHO RIZATION.v alue());
				988		}
				989		for (C onsentWrap per consen tWrapper : consents) {
				990		if (comment. getConsent Id().toStr ing().equa ls(consent Wrapper.no rmalConsen t.getConse ntDirId()) ) {
				991		consentW rapper.com ments.add( comment);
				992		}
				993		}
				994		}
				995		}
				996
				997		//ge t mail_not ification data and a dd it to t he Consent Wrapper fo r "normal" eHealth E xchange Re vocations
				998		if ( !consentId s.isEmpty( )) {
				999		List<MailN otificatio n> mails = this.getM ailNotific ationDAO() .findByCon sentDirIds (consentId s);
				1000		for (MailN otificatio n mail : m ails) {
				1001		for (C onsentWrap per consen tWrapper : consents) {
				1002		if (mail.getC onsentDirI d().getCon sentDirId( ).toString ().equals( consentWra pper.norma lConsent.g etConsentD irId())) {
				1003		consentW rapper.mai lNotificat ions.add(m ail);
				1004		}
				1005		}
				1006		}
				1007		}
				1008
				1009		//Ge t any dela yed consen t authoriz ations for current p atient
				1010		List <DelayedCo nsent> del ayedConsen tReference s = this.g etDelayedC onsentDAO( ).findByPa tientIen(i cn);
				1011
				1012		Dela yedConsent NwHINacti veDelay = null;
				1013		Dela yedConsent SSAactive Delay = nu ll;
				1014		List <Long> del ayedConsen tIds = new ArrayList <Long>();
				1015
				1016		for (DelayedCo nsent dc : delayedCo nsentRefer ences) {
				1017		consents.a dd(new Con sentWrappe r(dc));
				1018		delayedCon sentIds.ad d(dc.getDe layedConse ntId());
				1019
				1020		//Populate any activ e delays
				1021		if (dc.get Status().e quals("PEN DING")) {
				1022		if (dc .getConsen tTypeId(). getName(). contains(" NwHIN")) {
				1023		Nw HINactiveD elay = dc;
				1024		}
				1025		else i f (dc.getC onsentType Id().getNa me().conta ins("SSA") ) {
				1026		SS AactiveDel ay = dc;
				1027		}
				1028		}
				1029		}
				1030		if ( delayedCon sentIds.si ze() > 0) {
				1031		List<Conse ntComment> delayedCo mments = t his.getCon sentCommen tDAO().get CommentsBy DelayedCon sentIds(de layedConse ntIds);
				1032		for (Conse ntComment comment : delayedCom ments) {
				1033		for (C onsentWrap per consen tWrapper : consents) {
				1034		if (consentW rapper.del ayedConsen t != null) {
				1035		if (comm ent.getDel ayedConsen tId().equa ls(consent Wrapper.de layedConse nt.getDela yedConsent Id())) {
				1036		cons entWrapper .comments. add(commen t);
				1037		}
				1038		}
				1039		}
				1040		}
				1041		}
				1042
				1043		//ge t mail_not ification data and a dd it to t he Consent Wrapper fo r Delayed Consents
				1044		try {
				1045		List<MailN otificatio n> mails = this.getM ailNotific ationDAO() .findByDel ayedConsen tIds(delay edConsentI ds);
				1046		for (MailN otificatio n mail : m ails) {
				1047		for (C onsentWrap per consen tWrapper : consents) {
				1048		if (consentWr apper.dela yedConsent != null) {
				1049		if(mail. getDelayed ConsentId( ).getDelay edConsentI d().equals (consentWr apper.dela yedConsent .getDelaye dConsentId ()))
				1050		consentW rapper.mai lNotificat ions.add(m ail);
				1051		}
				1052		}
				1053		}
				1054		} ca tch (Excep tion e) {
				1055		throw new ServletExc eption(e);
				1056		}
				1057
				1058		sess ion.setAtt ribute("Nw HINactiveD elay", NwH INactiveDe lay);
				1059		sess ion.setAtt ribute("SS AactiveDel ay", SSAac tiveDelay) ;
				1060
				1061		// I rakli Kaku shadze 11/ 25/2014 JA ZZ 442142 -
				1062		// G et the lis t of annou ncements f or this pa tient by c onsent dir ective
				1063		// I D list so that we ca n change c aption of "Announce" button to "Re-Annou nce"
				1064		// i f the pati ent has al ready been announced .
				1065		Stri ng lastAnn ounceMessa ge = "";
				1066		if ( consentIds .isEmpty() ) {
				1067		session.se tAttribute ("hasBeenA nnounced", false);
				1068		} el se {
				1069		List<Annou ncement> a nnouncemen ts = this. patientAnn ouncer.get Announceme ntsByConse ntDirectiv eId(consen tIds);
				1070		session.se tAttribute ("hasBeenA nnounced", !announce ments.isEm pty());
				1071
				1072		if (!annou ncements.i sEmpty()) {
				1073		// Che ck to see if this pa tient was announced successful ly.
				1074		for (i nt i = ann ouncements .size() - 1; i >= 0; i--) {
				1075		if (announce ments.get( i).getAnno uncementRe sult() != null) {
				1076		if (Inte ger.parseI nt(announc ements.get (i).getAnn ouncementR esult()) > 0) {
				1077		if ( announceme nts.get(i) .getComple tedTs() != null) {
				1078		lastAnnoun ceMessage = "Last su ccessful a nnouncemen t: " +
				1079		new Si mpleDateFo rmat("yyyy -MM-dd HH: mm:ss").fo rmat(annou ncements.g et(i).getC ompletedTs ());
				1080		break;
				1081		}
				1082		}
				1083		}
				1084		}
				1085		if (la stAnnounce Message.le ngth() == 0) {
				1086		// There are no succes sful annou ncements, let's show the last failed ann ouncement, if any.
				1087		fo r (int i = announcem ents.size( ) - 1; i > = 0; i--) {
				1088		if (anno uncements. get(i).get Announceme ntResult() != null) {
				1089		if ( announceme nts.get(i) .getComple tedTs() != null) {
				1090		lastAnnoun ceMessage = "No succ essful ann ouncements . Last fai led announ cement: " +
				1091		new Si mpleDateFo rmat("yyyy -MM-dd HH: mm:ss").fo rmat(annou ncements.g et(i).getC ompletedTs ());
				1092		break;
				1093		}
				1094		}
				1095		}
				1096		}
				1097		if (la stAnnounce Message.le ngth() == 0) {
				1098		// There are no comple ted announ cements, l et's show the last s cheduled a nnouncemen t, if any.
				1099		fo r (int i = announcem ents.size( ) - 1; i > = 0; i--) {
				1100		if (anno uncements. get(i).get CreatedTs( )!= null) {
				1101		last AnnounceMe ssage = "N o complete d announce ments. Las t schedule d announce ment: " +
				1102		new Simple DateFormat ("yyyy-MM- dd HH:mm:s s").format (announcem ents.get(i ).getCreat edTs());
				1103		brea k;
				1104		}
				1105		}
				1106		}
				1107		}
				1108		}
				1109		sess ion.setAtt ribute("la stAnnounce ment", las tAnnounceM essage);
				1110
				1111		// Get t he demogra phic detai ls section
				1112		final Pa tientDemog raphicsQue ry patient Demographi csQuery = new Patien tDemograph icsQuery() ;
				1113		patientD emographic sQuery.set PatientId( icn);
				1114		final Pa tientDemog raphicsRes ponse pati entDemogra phicsRespo nse = this .pdqServic e
				1115		.g etPatientD emographic s(patientD emographic sQuery);
				1116		final Pa tientDemog raphics de mographics = patient Demographi csResponse
				1117		.g etPatientD emographic s();
				1118		session. setAttribu te("patien tDemograph ics", demo graphics);
				1119		session. setAttribu te("isOrga nizationEx clusionsAl lowed", th is
				1120		.g etCmsHelpe r().isOrga nizationEx clusionsAl lowed());
				1121		session. setAttribu te("isForm UploadAllo wed", this .getCmsHel per()
				1122		.i sFormUploa dEnabled() );
				1123
				1124		session. setAttribu te("maxFil eUploadSiz e", this
				1125		.g etDocument Helper().g etMaxUploa dFileSize( ));
				1126		// Get t he allowed organizat ions to li st them on the patie nt
				1127		// detai ls page
				1128		fina l ArrayLis t<Organiza tionType> allowedOrg anizations = new Arr ayList<Org anizationT ype>(this. getCmsHelp er().getAl lowedNonCo nsumerOnly Organizati ons());
				1129		//final Collection <Organizat ionType> a llowedOrga nizations = this.get CmsHelper( ).getAllow edNonConsu merOnlyOrg anizations ();
				1130		session. setAttribu te("allowe dOrganizat ions",allo wedOrganiz ations);
				1131
				1132		fina l ArrayLis t<gov.va.n vap.svc.fa cility.dat a.Facility > allowedF acilities = new Arra yList<gov. va.nvap.sv c.facility .data.Faci lity>(this .getFacili tyHelper() .getAllowe dVistAFaci lities());
				1133		//final Collection <gov.va.nv ap.svc.fac ility.data .Facility> allowedFa cilities = this.getF acilityHel per().getA llowedVist AFacilitie s();
				1134		session. setAttribu te("allowe dFacilitie s", allowe dFacilitie s);
				1135		// Get t he Default Facility by user id
				1136		/*
				1137		final go v.va.nvap. svc.facili ty.data.Fa cility def aultUserFa cility = t his
				1138		.g etFacility Helper().g etFacility StationByV HAUserId(
				1139		UserHe lper.getUs erName(req uest));
				1140		if (Null Checker.is NotEmpty(d efaultUser Facility)) {
				1141		session.se tAttribute ("defaultU serFacilit y",
				1142		defa ultUserFac ility);
				1143		}
				1144		*/
				1145		final go v.va.nvap. svc.facili ty.data.Fa cility def aultUserFa cility =
				1146		(gov.va.nv ap.svc.fac ility.data .Facility) session.g etAttribut e("default UserFacili ty");
				1147
				1148		// Get a ll the con sent direc tives - ne eded to po pulate the
				1149		// conse nt managem ent histor y
				1150		// final Li st<Consent DirectiveR eferenceTy pe> consen tDirective References = this
				1151		// .g etCmsHelpe r().getCon sentDirect iveHistory (icn);
				1152		// Get t he active consent di rective to display b efore hist ory
				1153		ConsentD irectiveRe ferenceTyp e activeCo nsentDirec tiveRefere nceType = null;
				1154		ConsentD irectiveRe ferenceTyp e ssaActiv eConsentDi rectiveRef erenceType = null;
				1155		ConsentD irectiveRe ferenceTyp e nwhinOrg Restrictio nsActiveCo nsentDirec tiveRefere nceType = null;
				1156		if (Null Checker.is NotEmpty(c onsentDire ctiveRefer ences)) {
				1157		for (final ConsentDi rectiveRef erenceType type : co nsentDirec tiveRefere nces) {
				1158		if (NullChec ker.isEmpt y(type.get OptoutTS() )
				1159		&& Con sentType.N W_HIN_AUTH ORIZATION. value()
				1160		.equals(ty pe.getOpti nConsentTy pe()
				1161		.val ue())
				1162		&& typ e.getExpir ationDate( ).after(ne w Date())) {
				1163		acti veConsentD irectiveRe ferenceTyp e = type;
				1164		}
				1165		if (NullChec ker.isEmpt y(type.get OptoutTS() )
				1166		&& Con sentType.S SA_AUTHORI ZATION.val ue()
				1167		.equals(ty pe.getOpti nConsentTy pe()
				1168		.val ue())
				1169		&& typ e.getExpir ationDate( ).after(ne w Date())) {
				1170		ssaA ctiveConse ntDirectiv eReference Type = typ e;
				1171		}
				1172		if (NullChec ker.isEmpt y(type.get OptoutTS() )
				1173		&& Con sentType.N W_HIN_ORGA NIZATION_R ESTRICTION _AUTHORIZA TION
				1174		.value().e quals(
				1175		type .getOptinC onsentType ()
				1176		.value() )) {
				1177		nwhi nOrgRestri ctionsActi veConsentD irectiveRe ferenceTyp e = type;
				1178		}
				1179		}
				1180		}
				1181
				1182		//Po pulate any attachmen ts for nor mal consen ts.
				1183		for (final Con sentWrappe r consent : consents ) {
				1184		if (consen t.delayedC onsent == null) {
				1185		try {
				1186		fi nal String optinDocu ment = thi s.getCmsHe lper().ret rieveDocum ent(consen t.normalCo nsent.getC onsentDirI d(), "Auth orize");
				1187
				1188		if (DASUtil. isDASDocum ent(optinD ocument)) {
				1189		consent. setOptInDo cumentAtta chment(Nul lChecker.i sNotEmpty( optinDocum ent));
				1190		} else {
				1191		final St ring optin Attachment = optinDo cument == null ? nul l : this.g etDocument Helper().g etPrivacyC onsentDire ctiveAttac hment(opti nDocument) ;
				1192		consent. setOptInDo cumentAtta chment(Nul lChecker.i sNotEmpty( optinAttac hment));
				1193		}
				1194
				1195		if (NullChec ker.isNotE mpty(conse nt.normalC onsent.get OptoutTS() )) {
				1196		final St ring optou tDocument = this.get CmsHelper( ).retrieve Document(c onsent.nor malConsent .getConsen tDirId(), "Revoke");
				1197
				1198		if (DASU til.isDASD ocument(op toutDocume nt)) {
				1199		cons ent.hasOpt OutDocumen tAttachmen t(NullChec ker.isNotE mpty(optou tDocument) );
				1200		} else {
				1201		fina l String o ptoutAttac hment = op toutDocume nt == null ? null : this.getDo cumentHelp er().getPr ivacyConse ntDirectiv eAttachmen t(optoutDo cument);
				1202		cons ent.hasOpt OutDocumen tAttachmen t(NullChec ker.isNotE mpty(optou tAttachmen t));
				1203		}
				1204
				1205		} else {
				1206		consent. hasOptOutD ocumentAtt achment(fa lse);
				1207		}
				1208		} catc h (final T ransformer Exception ex) {
				1209		th row new Se rvletExcep tion(ex);
				1210		} catc h (final X PathExcept ion ex) {
				1211		th row new Se rvletExcep tion(ex);
				1212		}
				1213		}
				1214		}
				1215
				1216		// // Sort the c ombined co nsent refe rences by date added .
				1217		// Co llections. sort(conse nts, new C omparator< ConsentWra pper>() {
				1218		// @Overrid e
				1219		// public i nt compare (ConsentWr apper o1, ConsentWra pper o2) {
				1220		// retu rn o2.entr yDate().co mpareTo(o1 .entryDate ());
				1221		// }
				1222		// }) ;
				1223
				1224		session. setAttribu te("consen ts", conse nts);
				1225
				1226		// if th ere is a a ctive cons ent direct ive, then get the ex cluded
				1227		// organ izations
				1228		if (nwhi nOrgRestri ctionsActi veConsentD irectiveRe ferenceTyp e != null) {
				1229		final Coll ection<Org anizationT ype> exclu dedOrganiz ations = n whinOrgRes trictionsA ctiveConse ntDirectiv eReference Type
				1230		.get ExcludedOr ganization s();
				1231		final List <Organizat ionType> a uthorizedO rganizatio ns = new A rrayList<O rganizatio nType>();
				1232		for (final Organizat ionType or ganization : allowed Organizati ons) {
				1233		bo olean isEx cluded = f alse;
				1234		fo r (final O rganizatio nType excl udedOrgani zation : e xcludedOrg anizations ) {
				1235		if ( organizati on.getOrgN umber().eq uals(
				1236		excluded Organizati on.getOrgN umber())) {
				1237		isExcl uded = tru e;
				1238		}
				1239		}
				1240		if (!isExclu ded) {
				1241		auth orizedOrga nizations. add(organi zation);
				1242		}
				1243		}
				1244		//cast it to ArrayLi st because that is s erializabl e and Fort ify won't complain
				1245		ArrayList< Organizati onType> ex Org = new ArrayList< Organizati onType>(ex cludedOrga nizations) ;
				1246
				1247		// Set in session
				1248		session.se tAttribute ("excluded Organizati ons", exOr g);
				1249		session.se tAttribute ("authoriz edOrganiza tions",
				1250		auth orizedOrga nizations) ;
				1251		}
				1252		// Must be opt-out
				1253		session. setAttribu te("consen tDirective ",
				1254		ac tiveConsen tDirective ReferenceT ype);
				1255		session. setAttribu te("ssaCon sentDirect ive",
				1256		ss aActiveCon sentDirect iveReferen ceType);
				1257
				1258		session. setAttribu te("isNewA uthorizati onAllowed" , true);
				1259		session. setAttribu te("isSSAN ewAuthoriz ationAllow ed", true) ;
				1260		session. setAttribu te("nwhinO rganizatio nRestricti onsDirecti ve",
				1261		nw hinOrgRest rictionsAc tiveConsen tDirective ReferenceT ype);
				1262
				1263		session. setAttribu te("optOut Reasons", this.getCm sHelper()
				1264		.g etOptoutRe asons());
				1265
				1266		// Get t he correla tions sect ion
				1267		final Pa tientCorre lationsQue ry patient Correlatio nsQuery = new Patien tCorrelati onsQuery() ;
				1268		patientC orrelation sQuery.set PatientId( icn);
				1269		// Get t he correla tions
				1270		final Pa tientCorre lationsRes ponse pati entCorrela tionsRespo nse = this .pdqServic e
				1271		.g etCorrelat edFaciliti es(patient Correlatio nsQuery);
				1272		final Li st<Facilit y> facilit ies = pati entCorrela tionsRespo nse
				1273		.g etFaciliti es();
				1274		final Li st<Map<Str ing, Strin g>> correl ations = n ew ArrayLi st<Map<Str ing, Strin g>>();
				1275		if (Null Checker.is NotEmpty(f acilities) ) {
				1276		for (final Facility facility : facilitie s) {
				1277		fi nal String correlate dPatientId = facilit y
				1278		.getCo rrelatedPa tientId();
				1279		fi nal String correlate dFacilityI d = facili ty
				1280		.getFa cilityId() ;
				1281		fi nal Organi zationType organizat ion = this
				1282		.getCm sHelper(). getOrganiz ationByNum ber(
				1283		correlated FacilityId );
				1284
				1285		if (NullChec ker.isNotE mpty(organ ization)) {
				1286		fina l Map<Stri ng, String > correlat ion = new HashMap<St ring, Stri ng>();
				1287		fina l String f acilityNam e = organi zation
				1288		.getOrgN ame();
				1289		fina l String f acilityNum ber = orga nization
				1290		.getOrgN umber();
				1291		fina l String o rgOid = or ganization .getOrgOid ();
				1292		corr elation.pu t("organiz ationOid", orgOid);
				1293
				1294		corr elation.pu t("facilit yName", fa cilityName );
				1295		fina l String o id = facil ity
				1296		.getAssi gningAutho rityNumber ();
				1297		corr elation.pu t("assigni ngAuthorit yOid", oid );
				1298		corr elation.pu t("facilit yNumber", facilityNu mber);
				1299		corr elation.pu t("correla tedPatient Id",
				1300		correlat edPatientI d);
				1301		corr elations.a dd(correla tion);
				1302		}
				1303		}
				1304		}
				1305
				1306		// Set t he correla tions int he session
				1307		session. setAttribu te("correl ations", c orrelation s);
				1308
				1309		// get t he comment s for the patient de tail secti on
				1310		final St ring patie ntIen = de mographics .getIcn();
				1311		session. setAttribu te("patien tIen", pat ientIen);
				1312		List<Pat ientCommen t> patient Comments = this.getP atientComm entDAO().g etComments ByPatientI en(patient Ien);
				1313		session. setAttribu te("patien tComments" , patientC omments);
				1314
				1315		} catc h (final P dqExceptio n ex) {
				1316		throw ne w ServletE xception(e x);
				1317		}
				1318		// SUC CESS
				1319		this.f orward(req uest, resp onse, "sho w");
				1320		} el se {
				1321		this.f orward(req uest, resp onse, "nos how");
				1322		}
				1323		}
				1324
				1325		/**
				1326		* Han dles conse nt directi ve file up load
				1327		*
				1328		* @pa ram fileIt ems list o f uploaded file item s
				1329		* @pa ram reques t http ser vlet reque st
				1330		* @pa ram respon se http se rvlet resp onse
				1331		*
				1332		* @th rows javax .servlet.S ervletExce ption
				1333		* @th rows java. io.IOExcep tion
				1334		*/
				1335		pu blic void upload(fin al List<Fi leItem> fi leItems,
				1336		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				1337		throws ServletEx ception, I OException {
				1338		// G et the fie lds
				1339		fina l Map<Stri ng, String > formFiel ds = FileU ploadUtil
				1340		.getForm Fields(fil eItems);
				1341		// G et the upl oaded file s
				1342		fina l List<Fil eItem> fil esUploaded = FileUpl oadUtil
				1343		.getFile sUploaded( fileItems) ;
				1344		if ( NullChecke r.isNotEmp ty(filesUp loaded)) {
				1345		// Get the docum ent type a nd the con sent direc tive Id
				1346		final String doc umentType = formFiel ds.get("do cumentType ");
				1347		final String con sentDirId = formFiel ds.get("co nsentDirId ");
				1348		final String use rId = User Helper.get UserName(r equest);
				1349		final String use rFacilityS tationId = this.getF acilityHel per()
				1350		.getFacilt yStationId ByUserId(u serId);
				1351		this.g etCmsHelpe r().update Document(c onsentDirI d, documen tType,
				1352		filesUploa ded, userI d, userFac ilityStati onId);
				1353		}
				1354		this .forward(r equest, re sponse, "s uccess");
				1355		}
				1356
				1357		/* *
				1358		* View the C32 from t he adapter . It makes a webserv ice reques t to the
				1359		* adapter, pulls the data from local Vist A systems and displa ys it to t he
				1360		* user.
				1361		*
				1362		* @pa ram reques t http ser vlet reque st
				1363		* @pa ram respon se http se rvlet resp onse
				1364		*
				1365		* @th rows javax .servlet.S ervletExce ption
				1366		* @th rows java. io.IOExcep tion
				1367		* /
				1368		pu blic void view(final HttpServl etRequest request,
				1369		final HttpServle tResponse response) throws Ser vletExcept ion,
				1370		IOExce ption {
				1371		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1372
				1373		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1374		if ( NullChecke r.isNotEmp ty(icn)) {
				1375		try {
				1376		// Get t he C32 doc ument from the adapt er
				1377		String d ocument = this.getDo cumentHelp er().getC3 2Document( icn,
				1378		Us erHelper.g etUserName (request)) ;
				1379		if (Null Checker.is Empty(docu ment)) {
				1380		throw new ServletExc eption(
				1381		"The re was an issue retr ieving hea lth summar y for this patient w ith ICN:"
				1382		+ icn);
				1383		}
				1384		// Remov e xml-styl esheet
				1385		document = documen t
				1386		.r eplaceAll(
				1387		"<?xml -styleshee t type=\"t ext/xsl\" href=\"CCD .xsl\"?>",
				1388		"");
				1389		// Get t he style s heets
				1390		final St ring style SheetViewT ype = requ est
				1391		.g etParamete r("styleSh eetViewTyp e");
				1392		if ("xml ".equals(s tyleSheetV iewType)) {
				1393		response.s etContentT ype("text/ xml;charse t=UTF-8");
				1394		response.g etWriter() .write(doc ument);
				1395		} else {
				1396		// Update session in the docum ent
				1397		final Stri ng html = this.getDo cumentHelp er().getHt ml(
				1398		docu ment, styl eSheetView Type);
				1399		session.se tAttribute ("updatedD ocument", html);
				1400		session.se tAttribute ("document ", documen t);
				1401		session.se tAttribute ("isXmlVie wEnabled", this
				1402		.get DocumentHe lper().isX mlViewEnab led());
				1403		this.forwa rd(request , response , "showdoc ");
				1404		}
				1405		} catc h (final A dapterExce ption ex) {
				1406		throw ne w ServletE xception(e x);
				1407		}
				1408		} el se {
				1409		this.f orward(req uest, resp onse, "nos how");
				1410		}
				1411
				1412		}
				1413
				1414		pu blic void addComment (final Htt pServletRe quest requ est, final HttpServl etResponse response) throws Se rvletExcep tion, IOEx ception {
				1415		final St ring comme nts = requ est.getPar ameter("co mments");
				1416		final St ring conse ntType = r equest.get Parameter( "consentTy pe");
				1417		final St ring conse ntId = req uest.getPa rameter("c onsentId") ;
				1418		final St ring delay edConsentI d = reques t.getParam eter("dela yedConsent Id");
				1419		final St ring userI d = UserHe lper.getUs erName(req uest);
				1420
				1421		if(NullC hecker.isN otEmpty(co mments)) {
				1422		//ha ndle comme nts
				1423		Cons entComment comment = new Conse ntComment( );
				1424		comm ent.setCom ments(comm ents);
				1425		comm ent.setCon sentType(c onsentType );
				1426		comm ent.setUse rId(userId );
				1427		comm ent.setDat eAdded(new Date());
				1428
				1429		//De termine if comment i s for a de layed or n ormal auth orization
				1430		if ( NullChecke r.isNullOr Empty(cons entId)) {
				1431		comment.se tDelayedCo nsentId(Lo ng.parseLo ng(delayed ConsentId) );
				1432		}
				1433		else {
				1434		comment.se tConsentId (Long.pars eLong(cons entId));
				1435		}
				1436
				1437
				1438		this .getConsen tCommentDA O().create (comment);
				1439
				1440		// S uccess
				1441		this .forward(r equest, re sponse, "s uccess");
				1442		} else {
				1443		// V alidate
				1444		this .forward(r equest, re sponse, "v alidate");
				1445		}
				1446		}
				1447
				1448		pu blic void addPatient Comment(fi nal HttpSe rvletReque st request , final Ht tpServletR esponse re sponse) th rows Servl etExceptio n, IOExcep tion {
				1449		final St ring comme nts = requ est.getPar ameter("co mments");
				1450		final St ring patie ntIen = re quest.getP arameter(" patientIen ");
				1451		final St ring userI d = UserHe lper.getUs erName(req uest);
				1452
				1453		if(NullC hecker.isN otEmpty(co mments)) {
				1454		//ha ndle comme nts
				1455		Pati entComment comment = new Patie ntComment( );
				1456		comm ent.setUse rId(userId );
				1457		comm ent.setDat eAdded(new Date());
				1458		comm ent.setCom ments(comm ents);
				1459		comm ent.setPat ientIen(pa tientIen);
				1460
				1461		this .getPatien tCommentDA O().create (comment);
				1462
				1463		// S uccess
				1464		this .forward(r equest, re sponse, "s uccess");
				1465		} else {
				1466		// V alidate
				1467		this .forward(r equest, re sponse, "v alidate");
				1468		}
				1469		}
				1470
				1471		pu blic void authorizeN wHIN(final HttpServl etRequest request,
				1472		final HttpServle tResponse response) throws Ser vletExcept ion,
				1473		IOExce ption {
				1474		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1475
				1476		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1477		if ( NullChecke r.isNotEmp ty(icn)) {
				1478		} el se {
				1479		}
				1480		se ssion.setA ttribute(" delayedNwH INAuth", n ull);
				1481		this .forward(r equest, re sponse, "a uthorizeNw HIN");
				1482		}
				1483
				1484		public void auth orizeDelay NwHIN(fina l HttpServ letRequest request,
				1485		final HttpServle tResponse response) throws Ser vletExcept ion,
				1486		IOExce ption {
				1487		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1488
				1489		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1490		sess ion.setAtt ribute("de layedNwHIN Auth", tru e);
				1491		this .forward(r equest, re sponse, "a uthorizeDe layNwHIN") ;
				1492		}
				1493
				1494		public void auth orizeDelay SSA(final HttpServle tRequest r equest,
				1495		fi nal HttpSe rvletRespo nse respon se) throws ServletEx ception,
				1496		IO Exception {
				1497		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				1498		fi nal String icn = (St ring) sess ion.getAtt ribute("ic n");
				1499		se ssion.setA ttribute(" delayedSSA Auth", tru e);
				1500		th is.forward (request, response, "authorize DelaySSA") ;
				1501		}
				1502
				1503		pu blic void revokeNwHI N(final Ht tpServletR equest req uest,
				1504		final HttpServle tResponse response) throws Ser vletExcept ion,
				1505		IOExce ption {
				1506		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1507
				1508		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1509		if ( NullChecke r.isNotEmp ty(icn)) {
				1510		} el se {
				1511		}
				1512		this .forward(r equest, re sponse, "r evokeNwHIN ");
				1513		}
				1514
				1515		pu blic void authorizeS SA(final H ttpServlet Request re quest,
				1516		final HttpServle tResponse response) throws Ser vletExcept ion,
				1517		IOExce ption {
				1518		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1519
				1520		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1521		if ( NullChecke r.isNotEmp ty(icn)) {
				1522		} el se {
				1523		}
				1524		se ssion.setA ttribute(" delayedSSA Auth", nul l);
				1525		this .forward(r equest, re sponse, "a uthorizeSS A");
				1526		}
				1527
				1528		pu blic void revokeSSA( final Http ServletReq uest reque st,
				1529		final HttpServle tResponse response) throws Ser vletExcept ion,
				1530		IOExce ption {
				1531		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1532
				1533		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1534		if ( NullChecke r.isNotEmp ty(icn)) {
				1535		} el se {
				1536		}
				1537		this .forward(r equest, re sponse, "r evokeSSA") ;
				1538		}
				1539
				1540		pu blic void authorizeN wHINOrgani zationRest rictions(
				1541		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				1542		throws ServletEx ception, I OException {
				1543		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1544
				1545		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1546		if ( NullChecke r.isNotEmp ty(icn)) {
				1547		} el se {
				1548		}
				1549		this .forward(r equest, re sponse,
				1550		"authori zeNwHINOrg anizationR estriction s");
				1551		}
				1552
				1553		pu blic void revokeNwHI NOrganizat ionRestric tions(
				1554		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				1555		throws ServletEx ception, I OException {
				1556		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1557
				1558		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1559		if ( NullChecke r.isNotEmp ty(icn)) {
				1560		} el se {
				1561		}
				1562		this .forward(r equest, re sponse, "r evokeNwHIN Organizati onRestrict ions");
				1563		}
				1564
				1565		pu blic void modifyNwHI NOrganizat ionRestric tions(
				1566		final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se)
				1567		throws ServletEx ception, I OException {
				1568		fina l HttpSess ion sessio n = reques t.getSessi on(false);
				1569
				1570		fina l String i cn = (Stri ng) sessio n.getAttri bute("icn" );
				1571		if ( NullChecke r.isNotEmp ty(icn)) {
				1572		} el se {
				1573		}
				1574		this .forward(r equest, re sponse, "m odifyNwHIN Organizati onRestrict ions");
				1575		}
				1576
				1577		pu blic void addComment Form(final HttpServl etRequest request, f inal HttpS ervletResp onse respo nse) throw s ServletE xception, IOExceptio n {
				1578		final Ht tpSession session = request.ge tSession(f alse);
				1579
				1580		final St ring conse ntId = req uest.getPa rameter("c onsentId") ;
				1581		final St ring delay edConsentI d = reques t.getParam eter("dela yedConsent Id");
				1582		final St ring conse ntType = r equest.get Parameter( "consentTy pe");
				1583		session. setAttribu te("consen tId", cons entId);
				1584		session. setAttribu te("delaye dConsentId ", delayed ConsentId) ;
				1585		session. setAttribu te("consen tType", co nsentType) ;
				1586
				1587		this.for ward(reque st, respon se, "addCo mmentForm" );
				1588		}
				1589
				1590		pu blic void addPatient CommentFor m(final Ht tpServletR equest req uest, fina l HttpServ letRespons e response ) throws S ervletExce ption, IOE xception {
				1591		final Ht tpSession session = request.ge tSession(f alse);
				1592
				1593		final St ring patie ntIen = re quest.getP arameter(" patientIen ");
				1594		session. setAttribu te("patien tIen", pat ientIen);
				1595
				1596		this.for ward(reque st, respon se, "addPa tientComme ntForm");
				1597		}
				1598
				1599		public void edit MailDatesF orm(final HttpServle tRequest r equest, fi nal HttpSe rvletRespo nse respon se) throws ServletEx ception, I OException , ParseExc eption {
				1600		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				1601
				1602		fi nal String delayedCo nsentId = request.ge tParameter ("delayedC onsentId") ;
				1603		fi nal String consentDi rId = requ est.getPar ameter("co nsentDirId ");
				1604		Li st<MailNot ification> mailNotif ications = new Array List<MailN otificatio n>();
				1605
				1606		if (NullCheck er.isNullO rEmpty(del ayedConsen tId)) {
				1607		//get ma il notific ations by consentDir Id
				1608		mailNoti fications = this.get MailNotifi cationDAO( ).findByCo nsentDirId (consentDi rId);
				1609		} else {
				1610		//get ma il notific ations by delayedCon sentId
				1611		mailNoti fications = this.get MailNotifi cationDAO( ).findByDe layedConse ntId(delay edConsentI d);
				1612		}
				1613
				1614		// TODO: JPS - get the logs for t his by con sentDirId or delayed ConsentId
				1615
				1616		se ssion.setA ttribute(" mailNotifi cations", mailNotifi cations);
				1617		se ssion.setA ttribute(" delayedCon sentId", d elayedCons entId);
				1618		se ssion.setA ttribute(" consentDir Id", conse ntDirId);
				1619
				1620		th is.forward (request, response, "editMailD atesForm") ;
				1621		}
				1622
				1623		public void edit MailDates( final Http ServletReq uest reque st, final HttpServle tResponse response) throws Ser vletExcept ion, IOExc eption, Pa rseExcepti on, Except ion {
				1624		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				1625
				1626		// get everyt hing from the form
				1627		fi nal String delayedCo nsentId = request.ge tParameter ("delayedC onsentId") ;
				1628		fi nal String consentDi rId = requ est.getPar ameter("co nsentDirId ");
				1629		fi nal String [] newMail Dates = Nu llChecker. isNullOrEm pty(reques t.getParam eterValues ("mailDate ")) ? new String[0] : request. getParamet erValues(" mailDate") ;
				1630		Si mpleDateFo rmat forma tter = new SimpleDat eFormat("M M/dd/yyyy" );
				1631		fi nal String userId = UserHelper .getUserNa me(request );
				1632
				1633		Li st<MailNot ification> existingM ailNotific ations = n ew ArrayLi st<MailNot ification> ();
				1634
				1635		if (NullCheck er.isNullO rEmpty(del ayedConsen tId)) {
				1636		//get ma il notific ations by consentDir Id
				1637		existing MailNotifi cations = this.getMa ilNotifica tionDAO(). findByCons entDirId(c onsentDirI d);
				1638		} else {
				1639		//get ma il notific ations by delayedCon sentId
				1640		existing MailNotifi cations = this.getMa ilNotifica tionDAO(). findByDela yedConsent Id(delayed ConsentId) ;
				1641		}
				1642
				1643		// make a lis t of the o ld dates f or the log and do th e delete o f all of t hese at th e same tim e
				1644		Ar rayList<Da te> oldDat es = new A rrayList<D ate>();
				1645		fo r(MailNoti fication e m : existi ngMailNoti fications) {
				1646		oldDates .add(em.ge tSentDate( ));
				1647
				1648		this.get MailNotifi cationDAO( ).delete(e m);
				1649		}
				1650
				1651		// make a lis t of all t he new dat es for the log and d o the inse rt of all of these a t the same time
				1652		Ar rayList<Da te> newDat es = new A rrayList<D ate>();
				1653		fo r(String n md : newMa ilDates) {
				1654		if(nmd.l ength() > 0) {
				1655		newD ates.add(f ormatter.p arse(nmd)) ;
				1656
				1657		Mail Notificati on mn = ne w MailNoti fication() ;
				1658		Date dt = form atter.pars e(nmd);
				1659		mn.s etSentDate (dt);
				1660		mn.s etUserId(u serId);
				1661
				1662		if(N ullChecker .isNullOrE mpty(delay edConsentI d)) {
				1663		ConsentDir ective cd = this.get ConsentDir ectiveJpaC ontroller( ).findCons entDirecti ve(Long.pa rseLong(co nsentDirId ));
				1664		mn.setCons entDirId(c d);
				1665		} el se {
				1666		DelayedCon sent dc = this.getDe layedConse ntDAO().fi ndByDelaye dConsentId (Long.pars eLong(dela yedConsent Id));
				1667		mn.setDela yedConsent Id(dc);
				1668		}
				1669
				1670		this .getMailNo tification DAO().crea te(mn);
				1671		}
				1672		}
				1673
				1674		// get the lo g entry
				1675		St ring logEn try = this .getLogEnt ry(oldDate s, newDate s, userId) ;
				1676
				1677		// save the l og entry
				1678		if (!logEntry .isEmpty() ) {
				1679		MailLog ml = new M ailLog();
				1680		ml.setLo gEntry(log Entry);
				1681		if(NullC hecker.isN ullOrEmpty (delayedCo nsentId)) {
				1682		Long conDir = Long.parse Long(conse ntDirId);
				1683		ml.s etConsentD irId(conDi r);
				1684		} else {
				1685		Long delDir = Long.parse Long(delay edConsentI d);
				1686		ml.s etDelayedC onsentId(d elDir);
				1687		}
				1688
				1689		this.get MailLogDAO ().create( ml);
				1690		}
				1691
				1692		th is.forward (request, response, "success") ;
				1693		}
				1694
				1695		public void getL ogEntries( final Http ServletReq uest reque st, final HttpServle tResponse response) throws Ser vletExcept ion, IOExc eption, Pa rseExcepti on, Except ion {
				1696		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				1697
				1698		fi nal String delayedCo nsentId = request.ge tParameter ("delayedC onsentId") ;
				1699		fi nal String consentDi rId = requ est.getPar ameter("co nsentDirId ");
				1700
				1701		Li st<MailLog > logs = n ew ArrayLi st<MailLog >();
				1702
				1703		if (NullCheck er.isNullO rEmpty(del ayedConsen tId)) {
				1704		//get ma il logs by consentDi rId
				1705		logs = t his.getMai lLogDAO(). findByCons entDirId(c onsentDirI d);
				1706		} else {
				1707		//get ma il logs by delayedCo nsentId
				1708		logs = t his.getMai lLogDAO(). findByDela yedConsent Id(delayed ConsentId) ;
				1709		}
				1710
				1711		se ssion.setA ttribute(" logs", log s);
				1712
				1713		th is.forward (request, response, "listMailL ogs");
				1714		}
				1715
				1716		privat e String g etLogEntry (ArrayList <Date> old Dates, Arr ayList<Dat e> newDate s, String userId) th rows Parse Exception {
				1717		St ring log = "";
				1718		bo olean adde d = false;
				1719		bo olean dele ted = fals e;
				1720		Si mpleDateFo rmat final Date = new SimpleDat eFormat("M M/dd/yyyy" );
				1721		Si mpleDateFo rmat occur edDateForm atter = ne w SimpleDa teFormat(" MM/dd/yyyy HH:mm:ss" );
				1722		Li st<Date> o ldDatesToU se = new A rrayList<D ate>(oldDa tes);
				1723		Li st<Date> n ewDatesToU se = new A rrayList<D ate>(newDa tes);
				1724
				1725		fo r (int i = oldDatesT oUse.size( ) - 1; i > = 0; i--) {
				1726		for (int j = newDa tesToUse.s ize() - 1; j >=0; j- -) {
				1727		Stri ng oldDate = finalDa te.format( oldDatesTo Use.get(i) );
				1728		Stri ng newDate = finalDa te.format( newDatesTo Use.get(j) );
				1729		if ( oldDate.eq uals(newDa te)) {
				1730		oldDates.r emove(i);
				1731		newDates.r emove(j);
				1732		}
				1733		}
				1734		}
				1735
				1736		if (oldDates .size() == 0 && newD ates.size( ) > 0) {
				1737		// Some new date(s ) were add ed.
				1738		added = true;
				1739		} else if (o ldDates.si ze() > 0 & & newDates .size() == 0) {
				1740		// Some date(s) we re deleted .
				1741		deleted = true;
				1742		} else if (o ldDates.si ze() > 0 & & newDates .size() > 0 ) {
				1743		// Some date(s) we re added a nd some de leted.
				1744		added = true;
				1745		deleted = true;
				1746		} else {
				1747		// Nothi ng has cha nged.
				1748		}
				1749
				1750		if (added) {
				1751		log += " added noti fication d ate" + (ne wDates.siz e() > 1 ? "s " : " " );
				1752
				1753		List<Str ing> newDa tesAsStrin gs = new A rrayList<S tring>();
				1754		for(Date date : ne wDates) {
				1755		newD atesAsStri ngs.add(fi nalDate.fo rmat(date) );
				1756		}
				1757
				1758		log += n ewDatesAsS trings.toS tring().re placeAll(" \\[\|\\]", "");
				1759		}
				1760
				1761		if (added && deleted) {
				1762		log += " and ";
				1763		}
				1764
				1765		if (deleted) {
				1766		// Some date(s) we re deleted .
				1767		log += " deleted no tification date" + ( oldDates.s ize() > 1 ? "s " : " ");
				1768
				1769		List<Str ing> oldDa tesAsStrin gs = new A rrayList<S tring>();
				1770		for(Date date : ol dDates) {
				1771		oldD atesAsStri ngs.add(fi nalDate.fo rmat(date) );
				1772		}
				1773		log += o ldDatesAsS trings.toS tring().re placeAll(" \\[\|\\]", "");
				1774		}
				1775
				1776		if (log.leng th() > 0) {
				1777		Date occ uredOn = n ew Date();
				1778		String o ccuredOnFo rmatted = occuredDat eFormatter .format(oc curedOn);
				1779		log = "O n " + occu redOnForma tted + " C T, user " + userId + " " + log + ".";
				1780		}
				1781
				1782		re turn log;
				1783		}
				1784
				1785		/*
				1786		Th is method commented out becaus e it shoul d only be used in de v/test.
				1787		Th ese types of test ha rnesses sh ould be im plemented using inte rfaces
				1788		ra ther than conditiona l logic th at will al ways retur n false in productio n.
				1789		*/
				1790		/*
				1791		privat e void moc kGetDocume ntFromDAS( ServletOut putStream ostream) t hrows IOEx ception {
				1792		In putStream is =
				1793		this. getClass() .getClassL oader().ge tResourceA sStream("g ov/va/nvap /web/das.t xt");
				1794
				1795		fi nal char[] buffer = new char[b ufferSize] ;
				1796		fi nal String Builder ou t = new St ringBuilde r();
				1797		tr y {
				1798		Reader i n = new In putStreamR eader(is, "UTF-8");
				1799		for (;;) {
				1800		int rsz = in.read( buffer, 0, buffer.le ngth);
				1801		if (rsz < 0)
				1802		brea k;
				1803		out.appe nd(buffer, 0, rsz);
				1804		}
				1805		}
				1806		ca tch (Unsup portedEnco dingExcept ion ex) {
				1807		}
				1808		ca tch (IOExc eption ex) {
				1809		}
				1810		St ring jsonS tring = ou t.toString ();
				1811
				1812
				1813		os tream.clos e();
				1814		is .close();
				1815
				1816		St ring xmlId = "";
				1817		in t xmlLengt h = 0;
				1818		St ring pdfId = "";
				1819		in t pdfLengt h = 0;
				1820		tr y {
				1821		JSONObje ct jObject = new JSO NObject(js onString);
				1822		xmlId = jObject.ge tString("g ridfsID");
				1823		xmlLengt h = jObjec t.getInt(" gridfsLeng th");
				1824		pdfId = ((JSONObje ct)jObject .getJSONAr ray("gridf sAttachmen ts").get(0 )).getStri ng("gridfs ID");
				1825		pdfLengt h = ((JSON Object)jOb ject.getJS ONArray("g ridfsAttac hments").g et(0)).get Int("gridf sLength");
				1826		} catch (JSO NException ex) {
				1827		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .SEVERE, n ull, ex);
				1828		}
				1829
				1830		is = this.ge tClass().g etClassLoa der().getR esourceAsS tream("gov /va/nvap/w eb/das.pdf ");
				1831		by te[] buf = new byte[ bufferSize ];
				1832		in t c = 0;
				1833		wh ile ((c = is.read(bu f, 0, buf. length)) > 0) {
				1834		ostr eam.write( buf, 0, c) ;
				1835		ostr eam.flush( );
				1836		}
				1837		}
				1838		*/
				1839
				1840		public void gene rateLetter (final Lis t<FileItem > fileItem s, final H ttpServlet Request re quest, fin al HttpSer vletRespon se respons e)
				1841		th rows Servl etExceptio n, IOExcep tion {
				1842
				1843		fi nal Simple DateFormat letterFor mat = new SimpleDate Format("MM /dd/yyyy") ;
				1844		fi nal HttpSe ssion sess ion = requ est.getSes sion(false );
				1845		fi nal String type = Fi leUploadUt il.getForm Fields(fil eItems).ge t("type");
				1846		In putStream inputStrea m = null;
				1847		St ring templ ateString = "";
				1848
				1849		// Get the f ields
				1850		fina l HashMap< String, St ring> form Fields = ( HashMap<St ring, Stri ng>) FileU ploadUtil. getFormFie lds(fileIt ems);
				1851		Ar rayList<Ha shMap<Stri ng,String> > patientD etails = n ew ArrayLi st<HashMap <String,St ring>>();
				1852		Bo olean mail ed = Boole an.parseBo olean(File UploadUtil .getFormFi elds(fileI tems).get( "markMaile d"));
				1853		go v.va.nvap. svc.facili ty.data.Fa cility fac ility = th is.getFaci lityHelper ().getFaci lityByStat ionId(form Fields.get ("authenti catingFaci lity"));
				1854		// Get and pa rse delaye d fields.
				1855		if (type.equ als("delay ed")) {
				1856		if (sess ion.getAtt ribute("ss aDelay") ! = null) {
				1857		sess ion.remove Attribute( "ssaDelay" );
				1858		inpu tStream = IOUtils.to InputStrea m(this.get MailTempla teDAO().ge tByLetterT ype(3L).ge tText(), " UTF-8");
				1859		}
				1860		else if (session.g etAttribut e("eheDela y") != nul l) {
				1861		sess ion.remove Attribute( "eheDelay" );
				1862		inpu tStream = IOUtils.to InputStrea m(this.get MailTempla teDAO().ge tByLetterT ype(2L).ge tText(), " UTF-8");
				1863		}
				1864
				1865		DelayedC onsent dc = (Delayed Consent)se ssion.getA ttribute(" delayedCon sent");
				1866		try {
				1867
				1868		temp lateString = new Sca nner(input Stream,"UT F-8").useD elimiter(" \\A").next ();
				1869		}
				1870		finally {
				1871		if(i nputStream != null) {
				1872		inputStrea m.close();
				1873		}
				1874		}
				1875		formFiel ds.put("[e ntryDate]" , letterFo rmat.forma t(dc.getDa teAdded()) );
				1876		//Parse the delaye d reasons.
				1877		String d elayReason String = " ";
				1878		String[] delayedRe asons = fo rmFields.g et("delayC ollection" ).split(", ");
				1879		for (int i = 0; i < delayedR easons.len gth; i++) {
				1880		dela yedReasons [i] = dela yedReasons [i].replac eAll("[^0- 9]+", "");
				1881		dela yedReasons [i] = this .getDelayR easonDAO() .findByDel ayReasonId (Long.pars eLong(dela yedReasons [i])).getN ame();
				1882		}
				1883		for (int i = 0; i < delayedR easons.len gth; i++) {
				1884		if ( i == 4) {
				1885		delayReaso nString += ",\n ";
				1886		} el se if (i > 0) {
				1887		delayReaso nString += ", ";
				1888		}
				1889		dela yReasonStr ing += del ayedReason s[i];
				1890		}
				1891		template String = t emplateStr ing.replac e("[reason sForDelay] ", delayRe asonString );
				1892		}
				1893
				1894		// Get and pa rse revoke d fields.
				1895		el se if (typ e.equals(" revoked")) {
				1896		inputStr eam = IOUt ils.toInpu tStream(th is.getMail TemplateDA O().getByL etterType( 1L).getTex t(), "UTF- 8");
				1897		try {
				1898		temp lateString = new Sca nner(input Stream,"UT F-8").useD elimiter(" \\A").next ();
				1899		}
				1900		finally {
				1901		if(i nputStream != null) {
				1902		inputStrea m.close();
				1903		}
				1904		}
				1905		ConsentD irective c onsent = ( ConsentDir ective)ses sion.getAt tribute("c onsent");
				1906		formFiel ds.put("[p urpose]", consent.ge tPurposeOf Use().getP ouValue()) ;
				1907		formFiel ds.put("[o ptoutDate] ", letterF ormat.form at(consent .getOptout Date()));
				1908		formFiel ds.put("[e xpirationD ate]", let terFormat. format(con sent.getEx pirationDa te()));
				1909		}
				1910
				1911		// Get and pa rse expiri ng fields.
				1912		el se if (typ e.equals(" expiring") ) {
				1913		inputStr eam = IOUt ils.toInpu tStream(th is.getMail TemplateDA O().getByL etterType( 4L).getTex t(), "UTF- 8");
				1914		try {
				1915		temp lateString = new Sca nner(input Stream, "U TF-8").use Delimiter( "\\A").nex t();
				1916		}
				1917		finally {
				1918		if(i nputStream != null) {
				1919		inputStrea m.close();
				1920		}
				1921		}
				1922		ConsentD irective c onsent = ( ConsentDir ective)ses sion.getAt tribute("c onsent");
				1923		if (!Nul lChecker.i sNullOrEmp ty(consent )) {
				1924		if ( consent.ge tOptinCons entType(). getName(). equals("SS A Authoriz ation")) {
				1925		formFields .put("[con sentDescri ption]", " Authorized access to Social Se curity Adm inistratio n");
				1926		formFields .put("[con sentName]" , consent. getOptinCo nsentType( ).getName( ));
				1927		} el se if (con sent.getOp tinConsent Type().get Name().equ als("NwHIN Authoriza tion")) {
				1928		formFields .put("[con sentDescri ption]", " Authorized access to Providers and Organ izations") ;
				1929		formFields .put("[con sentName]" , "eHealth Exchange Authorizat ion");
				1930		}
				1931		form Fields.put ("[purpose ]", consen t.getPurpo seOfUse(). getPouValu e());
				1932		form Fields.put ("[entryDa te]", lett erFormat.f ormat(cons ent.getOpt inTS()));
				1933		form Fields.put ("[expirat ionDate]", letterFor mat.format (consent.g etExpirati onDate())) ;
				1934		}
				1935		}
				1936
				1937		if (inputStre am != null ) {
				1938		inputStr eam.close( );
				1939		}
				1940
				1941		// Get patien t details
				1942		Pa tientDemog raphics pa tientDemog raphics = (PatientDe mographics ) session. getAttribu te("patien tDemograph ics");
				1943		fo rmFields.p ut("[date] ", new Sim pleDateFor mat("dd MM M, yyyy"). format(new Date()));
				1944		fo rmFields.p ut("[first Name]", pa tientDemog raphics.ge tFirstName ());
				1945		fo rmFields.p ut("[lastN ame]", pat ientDemogr aphics.get LastName() );
				1946		fo rmFields.p ut("[middl eName]", p atientDemo graphics.g etMiddleNa me());
				1947		fo rmFields.p ut("[facil ityName]", facility. getFacilit yName());
				1948		St ring addre ss1 = (fac ility.getA ddress() ! = null) ? facility.g etAddress( ) : "";
				1949		fo rmFields.p ut("[facil ityAddress 1]", addre ss1);
				1950		St ring addre ss2 = (fac ility.getC ity() != n ull) ? fac ility.getC ity() + ", " : "";
				1951		ad dress2 += (facility. getState() != null) ? facility .getState( ) + " " : "";
				1952		ad dress2 += (facility. getPostalC ode() != n ull) ? fac ility.getP ostalCode( ) : "";
				1953		fo rmFields.p ut("[facil ityAddress 2]", addre ss2);
				1954		St ring phone = (facili ty.getPhon e() != nul l) ? facil ity.getPho ne() : "";
				1955		if (!NullChe cker.isNul lOrEmpty(p hone)) {
				1956		phone = "(" + phon e.substrin g(0, 3) + ") " + pho ne.substri ng(3, 6) + "-" + pho ne.substri ng(6);
				1957		}
				1958		fo rmFields.p ut("[facil ityPhone]" , phone);
				1959
				1960		// Get and fo rmat patie nt address .
				1961		St ring addre ss = patie ntDemograp hics.getSt reetAddres sLine1() + "\n";
				1962		if (!NullChe cker.isNul lOrEmpty(p atientDemo graphics.g etStreetAd dressLine2 ())) {
				1963		address += patient Demographi cs.getStre etAddressL ine2() + " \n";
				1964		}
				1965		if (!NullChe cker.isNul lOrEmpty(p atientDemo graphics.g etStreetAd dressLine3 ())) {
				1966		address += patient Demographi cs.getStre etAddressL ine3() + " \n";
				1967		}
				1968
				1969		ad dress += p atientDemo graphics.g etResidenc eCity() + ", " + pat ientDemogr aphics.get ResidenceS tate() + " " +
				1970		patientD emographic s.getResid enceZip4() ;
				1971
				1972		te mplateStri ng = templ ateString. replace("[ patientAdd ress]", ad dress);
				1973
				1974		St ring sigFi elds = for mFields.ge t("signatu re");
				1975		te mplateStri ng = templ ateString. replace("[ signature] ", sigFiel ds);
				1976
				1977		pa tientDetai ls.add(for mFields);
				1978
				1979		Pd fGenerator pdfGenera tor = new PdfGenerat or();
				1980		By teArrayOut putStream pdfStream = pdfGener ator.creat e(template String, pa tientDetai ls, type);
				1981
				1982		re sponse.set ContentTyp e("applica tion/pdf") ;
				1983		re sponse.set ContentLen gth(pdfStr eam.size() );
				1984		re sponse.set Header("Co ntent-Tran sfer-Encod ing", "bin ary");
				1985		re sponse.add Header("Co ntent-Disp osition", "attachmen t; filenam e=patient_ letter.pdf ");
				1986		re sponse.set Header("pr agma", "em pty");
				1987		re sponse.set Header("Ca che-Contro l", "must- revalidate ");
				1988
				1989		tr y {
				1990		final Se rvletOutpu tStream os = respons e.getOutpu tStream();
				1991		Assert.a ssertNotEm pty(os, "O utput Stre am cannot be null!") ;
				1992		os.write (pdfStream .toByteArr ay());
				1993		os.flush ();
				1994		os.close ();
				1995		if (mail ed) {
				1996		Mail Notificati on mN = ne w MailNoti fication() ;
				1997		Mail Log mL = n ew MailLog ();
				1998		mN.s etSentDate (new Date( ));
				1999		mN.s etUserId(U serHelper. getUserNam e(request) );
				2000		Arra yList<Date > date = n ew ArrayLi st<Date>() ;
				2001		date .add(new D ate());
				2002		try {
				2003		String log = getLogE ntry(new A rrayList<D ate>(), da te, UserHe lper.getUs erName(req uest));
				2004		mL.setLogE ntry(log);
				2005		}
				2006		catc h (ParseEx ception ex ) {
				2007		Logger.get Logger(Pat ientDetail s.class.ge tName()).l og(Level.S EVERE, nul l, ex);
				2008		}
				2009		if ( type.equal s("delayed ")) {
				2010		DelayedCon sent dc = (DelayedCo nsent)sess ion.getAtt ribute("de layedConse nt");
				2011		mN.setDela yedConsent Id(dc);
				2012		mL.setDela yedConsent Id(dc.getD elayedCons entId());
				2013		try {
				2014		this.g etMailLogD AO().creat e(mL);
				2015		this.g etMailNoti ficationDA O().create (mN);
				2016		}
				2017		catch (Exc eption ex) {
				2018		}
				2019		}
				2020		else {
				2021		ConsentDir ective con sent = (Co nsentDirec tive)sessi on.getAttr ibute("con sent");
				2022		mN.setCons entDirId(c onsent);
				2023		mL.setCons entDirId(c onsent.get ConsentDir Id());
				2024		try {
				2025		this.g etMailLogD AO().creat e(mL);
				2026		this.g etMailNoti ficationDA O().create (mN);
				2027		}
				2028		catch (Exc eption ex) {
				2029		}
				2030		}
				2031
				2032		}
				2033		}
				2034		ca tch (final IOExcepti on ex) {
				2035		throw new Servle tException (ex);
				2036		}
				2037		}
				2038
				2039		private v oid getDoc umentFromD AS(Servlet OutputStre am ostream , String e xternalDoc umentId) t hrows IOEx ception{
				2040		// Bui ld and sen d initial DAS reques t
				2041		String dasRetrie veDocument EndPoint = Constant s.getDasRe trieveDocu mentEndPoi nt();
				2042		String dasRetrie veOneDocum entEndPoin t = Const ants.getDa sRetrieveO neDocument EndPoint() ;
				2043		String dasRetrie veDocument UrlWithDoc Id = dasR etrieveDoc umentEndPo int + exte rnalDocume ntId;
				2044
				2045		//Http Client cli ent = Http ClientBuil der.create ().build() ;
				2046		//Http Get reques t = new Ht tpGet(dasR etrieveDoc umentUrlWi thDocId);
				2047		URL ur l = new UR L(dasRetri eveDocumen tUrlWithDo cId);
				2048		Logger .getLogger (PatientDe tails.clas s.getName( )).log(Lev el.INFO, " DAS URL: " +dasRetrie veDocument UrlWithDoc Id);
				2049		HttpsU RLConnecti on conn = null;
				2050		conn = (HttpsURL Connection ) url.open Connection ();
				2051		conn.c onnect();
				2052
				2053		//adde d the resp onse messa ge on fail ure as wel l, because it can he lp with de bugging po tentially
				2054		if (co nn.getResp onseCode() != 200) {
				2055		th row new Ru ntimeExcep tion("\nFa iled : HTT P error co de : " + c onn.getRes ponseCode( ) + "\nHTT P response : " + con n.getRespo nseMessage ());
				2056		}
				2057		InputS tream inpu tStream = conn.getI nputStream ();
				2058		// Htt pResponse response = client.ex ecute(requ est);
				2059		// Htt pEntity en tity = res ponse.getE ntity();
				2060
				2061		// Rea d DAS resp onse to JS ON string
				2062		if (in putStream != null) {
				2063
				2064		fi nal char[] buffer = new char[b ufferSize] ;
				2065		fi nal String Builder ou t = new St ringBuilde r();
				2066		tr y {
				2067		Reader i n = new In putStreamR eader(inpu tStream, " UTF-8");
				2068		for (;;) {
				2069		int rsz = in.read( buffer, 0, buffer.le ngth);
				2070		if (rsz < 0)
				2071		brea k;
				2072		out.appe nd(buffer, 0, rsz);
				2073		}
				2074		}
				2075		ca tch (Unsup portedEnco dingExcept ion ex) {
				2076		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .SEVERE, n ull, ex);
				2077		}
				2078		ca tch (IOExc eption ex) {
				2079		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .SEVERE, n ull, ex);
				2080		}
				2081		St ring jsonS tring = ou t.toString ();
				2082		in putStream. close();
				2083
				2084		// Extract e Auth PDF I D from JSO N DAS resp onse
				2085		St ring pdfId = "";
				2086		in t pdfLengt h = 0;
				2087		tr y {
				2088		JSONObje ct jObject = new JSO NObject(js onString);
				2089		pdfId = ((JSONObje ct)jObject .getJSONAr ray("gridf sAttachmen ts").get(0 )).getStri ng("gridfs ID");
				2090		pdfLengt h = ((JSON Object)jOb ject.getJS ONArray("g ridfsAttac hments").g et(0)).get Int("gridf sLength");
				2091		} catch (JSO NException ex) {
				2092		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .SEVERE, n ull, ex);
				2093		}
				2094
				2095		if (pdfLengt h <= 0) {
				2096		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .WARNING,
				2097		"eAuth PDF length is not great er than ze ro");
				2098		}
				2099
				2100		da sRetrieveD ocumentUrl WithDocId = dasRetr ieveOneDoc umentEndPo int + pdfI d;
				2101		L ogger.getL ogger(Pati entDetails .class.get Name()).lo g(Level.IN FO, "DAS D oc URL: "+ dasRetriev eDocumentU rlWithDocI d);
				2102		ur l = new UR L(dasRetri eveDocumen tUrlWithDo cId);
				2103		co nn = (Http sURLConnec tion) url. openConnec tion();
				2104		co nn.connect ();
				2105
				2106		// added the response m essage on failure as well, bec ause it ca n help wit h debuggin g potentia lly
				2107		if (conn.get ResponseCo de() != 20 0) {
				2108		throw ne w RuntimeE xception(" \nFailed : HTTP erro r code : " + conn.ge tResponseC ode() + "\ nHTTP resp onse : " + conn.getR esponseMes sage());
				2109		}
				2110		In putStream is = conn .getInputS tream();
				2111		if (is != nu ll) {
				2112		// Print PDF
				2113		byte[] b uf = new b yte[buffer Size];
				2114		int c;
				2115		while (( c = is.rea d(buf, 0, buf.length )) > 0) {
				2116		ostr eam.write( buf, 0, c) ;
				2117		ostr eam.flush( );
				2118		}
				2119		is.close ();
				2120		} else {
				2121		Logger.g etLogger(P atientDeta ils.class. getName()) .log(Level .WARNING, "No inner PDF return ed");
				2122		}
				2123		} else {
				2124		Lo gger.getLo gger(Patie ntDetails. class.getN ame()).log (Level.WAR NING, "No documents returned") ;
				2125		}
				2126		}
				2127		}