4293. EPMO Open Source Coordination Office Redaction File Detail Report

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4293.1 Files compared

#	Location	File	Last Modified
1			Fri Jun 9 19:51:26 2017 UTC
2	eHealth_Exch (eHealth Exchange Enhancements) Build 3 docs & code_May_2017.zip\VAP_CIF_CODE0502.zip\VAP_CIF_CODE0502\VAP_CIF_CODE0502\nvap-web\src\main\java\gov\va\nvap\web\patient	ExcelGeneratorThread.java	Fri Apr 21 20:15:58 2017 UTC

4293.2 Comparison summary

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4293.3 Comparison options

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4293.4 Active regular expressions

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4293.5 Comparison detail

				1		package go v.va.nvap. web.patien t;
				2
				3		import gov .va.med.nh in.adapter .audit.Act ionValuesT ype;
				4		import gov .va.med.nh in.adapter .audit.Aud itSummarie sType;
				5		import gov .va.med.nh in.adapter .audit.Aud itSummaryT ype;
				6		import gov .va.med.nh in.adapter .audit.Aud itType;
				7		import gov .va.med.nh in.adapter .audit.Fie ldType;
				8		import gov .va.med.nh in.adapter .audit.Get Audits;
				9		import gov .va.med.nh in.adapter .audit.Get AuditsResp onse;
				10		import gov .va.med.nh in.adapter .audit.Get AuditsSumm ary;
				11		import gov .va.med.nh in.adapter .audit.Get AuditsSumm aryRespons e;
				12		import gov .va.med.nh in.adapter .audit.Gro upByFields Type;
				13		import gov .va.med.nh in.adapter .audit.Pag eInfoType;
				14		import gov .va.med.nh in.adapter .audit.Sor tDirection ;
				15		import gov .va.med.nh in.adapter .audit.Sor tFieldType ;
				16		import gov .va.med.nh in.adapter .audit.Sor tFieldsTyp e;
				17		import gov .va.med.nh in.adapter .audit.Str ingValuesT ype;
				18		import gov .va.med.nh in.adapter .audit.Sum maryFields Type;
				19		import gov .va.nvap.c ommon.date .Gregorian DateUtil;
				20		import gov .va.nvap.c ommon.sort .BubbleSor tListMap;
				21		import gov .va.nvap.c ommon.tran sformer.Tr ansformerE xception;
				22		import gov .va.nvap.c ommon.vali dation.Nul lChecker;
				23		import gov .va.nvap.c ommon.xpat h.XPathExc eption;
				24		import gov .va.nvap.p rivacy.Org anizationT ype;
				25		import gov .va.nvap.s ervice.ada pter.audit .AdapterAu ditManager ;
				26		import gov .va.nvap.s ervice.ada pter.audit .DirectAud itManager;
				27		import gov .va.nvap.s ervice.ada pter.audit .DirectSer viceExcept ion;
				28		import gov .va.nvap.s ervice.aud it.AuditEx ception;
				29		import gov .va.nvap.s vc.consent mgmt.stub. dao.Delaye dConsentRe portDAO;
				30		import gov .va.nvap.s vc.consent mgmt.stub. dao.MailNo tification DAO;
				31		import gov .va.nvap.s vc.consent mgmt.stub. dao.Patien tConsentDi rDAO;
				32		import gov .va.nvap.s vc.consent mgmt.stub. data.Delay Reason;
				33		import gov .va.nvap.s vc.consent mgmt.stub. data.Delay edConsentR pt;
				34		import gov .va.nvap.s vc.consent mgmt.stub. data.Detai ledConsent Directive;
				35		import gov .va.nvap.s vc.consent mgmt.stub. data.MailN otificatio n;
				36		import gov .va.nvap.w eb.consent .audit.Aud itedConsen tEx;
				37		import gov .va.nvap.w eb.consent .audit.dao .AuditedCo nsentDAO;
				38		import gov .va.nvap.w eb.dao.Use rDocumentD AO;
				39		import gov .va.nvap.w eb.helper. document.D ocumentHel per;
				40		import gov .va.nvap.w eb.helper. facility.F acilityHel per;
				41		import gov .va.nvap.w eb.helper. privacy.Co nsentManag ementHelpe r;
				42		import gov .va.nvap.w eb.helper. report.Rep ortHelper;
				43		import gov .va.nvap.w eb.report. ReportData Processor;
				44		import gov .va.nvap.w eb.user.do cument.Use rDocument;
				45		import gov .va.nvap.w eb.util.Co nstants;
				46		import gov .va.nvap.w eb.util.Fi eldChecks;
				47		import gov .va.nvap.w eb.util.xl s.CsvExpor ter;
				48		import gov .va.nvap.w eb.util.xl s.ExcelExp orter;
				49		import jav a.text.Sim pleDateFor mat;
				50		import jav a.util.Arr ayList;
				51		import jav a.util.Arr ays;
				52		import jav a.util.Col lection;
				53		import jav a.util.Dat e;
				54		import jav a.util.Has hMap;
				55		import jav a.util.Has hSet;
				56		import jav a.util.Lin kedHashMap ;
				57		import jav a.util.Lis t;
				58		import jav a.util.Map ;
				59		import jav a.util.log ging.Level ;
				60		import jav a.util.log ging.Logge r;
				61		import jav ax.servlet .ServletEx ception;
				62		import org .apache.co mmons.lang .StringUti ls;
				63		import org .apache.po i.ss.userm odel.Workb ook;
				64
				65		/**
				66		* Class t o create a nd run a s eparate th read for g enerating and storin g Excel an d CSV file s
				67		*
				68		* @author Zack Pete rson
				69		*/
				70		public cla ss ExcelGe neratorThr ead implem ents Runna ble{
				71
				72		privat e static f inal Logge r logger =
				73		Logger.g etLogger(E xcelGenera torThread. class.getN ame());
				74
				75		privat e String t itle;
				76		privat e String u serId;
				77		privat e Map<Stri ng, String > reportMa p;
				78		privat e Map<Stri ng, List<O bject>> fi lterMap;
				79		privat e boolean hasOptiona lRows = fa lse;
				80		privat e boolean isSummaryR eport = fa lse;
				81		privat e ExcelExp orter exEx port;
				82		privat e CsvExpor ter csvExp ort;
				83		privat e AdapterA uditManage r adapterA uditManage r;
				84		privat e DirectAu ditManager directAud itManager;
				85		privat e ReportHe lper repor tHelper;
				86		privat e Facility Helper fac ilityHelpe r;
				87		privat e ConsentM anagementH elper cmsH elper;
				88		privat e Document Helper doc umentHelpe r;
				89		privat e UserDocu mentDAO us erDocDao;
				90		privat e AuditedC onsentDAO auditedCon sentDAO;
				91		privat e PatientC onsentDirD AO patient ConsentDir DAO;
				92		privat e DelayedC onsentRepo rtDAO dela yedConsent ReportDAO;
				93		privat e MailNoti ficationDA O mailNoti ficationDA O;
				94		privat e Map<Stri ng, Object > attribut es;
				95		privat e Map<Stri ng, String > optional RowsMap;
				96		privat e String r eportSourc e;
				97		privat e String d ocumentTyp e;
				98
				99		// Tot al counter s
				100		privat e int real PatientMes sages = 0;
				101		privat e int real PatientFai ls = 0;
				102		privat e int real PatientMat ches = 0;
				103		privat e int test PatientMes sages = 0;
				104		privat e int test PatientFai ls = 0;
				105		privat e int test PatientMat ches = 0;
				106		privat e long tot alCount = 0l;
				107		privat e int uniq ueRealPati ents = 0;
				108		privat e int uniq ueTestPati ents = 0;
				109
				110		privat e Thread t hread;
				111		privat e final St ring threa dName;
				112
				113		public ExcelGene ratorThrea d(String n ame) {
				114		th is.threadN ame = name ;
				115		}
				116
				117		/**
				118		* Exc el generat ion code f or the new thread
				119		*/
				120		@Overr ide
				121		public void run( ) {
				122		if ("csv".eq uals(docum entType)) {
				123		logger.l og(Level.S EVERE, "EX PORT_CSV_S CHEDULED_B EGIN_" + T hread.curr entThread( ).getId() + " " + Sy stem.curre ntTimeMill is());
				124		} else {
				125		logger.l og(Level.S EVERE, "EX PORT_EXCEL _SCHEDULED _BEGIN_" + Thread.cu rrentThrea d().getId( ) + " " + System.cur rentTimeMi llis());
				126		}
				127		// Create in itial inco mplete use r document row
				128		// Using doc ument date to later retrieve d ocument si nce ID is generated
				129		Da te documen tDate = ne w Date();
				130		Us erDocument userDoc = new UserD ocument(ti tle, docum entDate, u serId, nul l, "In Pro gress");
				131		if (document Type != nu ll && docu mentType.e quals("csv ")) {
				132		userDoc. setFormat( "CSV");
				133		} else {
				134		userDoc. setFormat( "Excel");
				135		}
				136		tr y {
				137		userDocD ao.create( userDoc);
				138		} catch (Exc eption ex) {
				139		logger.l og(Level.S EVERE, "Us er documen t already exists: ", ex);
				140		}
				141
				142		Li st<Map<Str ing, Objec t>> result s;
				143		tr y {
				144		// Get t he results from the adapter
				145		if (isSu mmaryRepor t) {
				146		resu lts = getS ummaryResu lts();
				147		} else i f (!NullCh ecker.isNu llOrEmpty( auditedCon sentDAO)) {
				148		try {
				149		results = getAudited ConsentRes ults();
				150		} ca tch (Servl etExceptio n ex) {
				151		logger.log (Level.SEV ERE, "Fail ed to retr ieve Audit ed Consent data: ", ex);
				152		markDocume ntFailure( documentDa te);
				153		return;
				154		}
				155		} else i f (!NullCh ecker.isNu llOrEmpty( patientCon sentDirDAO )) {
				156		resu lts = getP atientCons entDirResu lts();
				157		} else i f (!NullCh ecker.isNu llOrEmpty( delayedCon sentReport DAO)) {
				158		resu lts = getD elayedCons entResults ();
				159		} else {
				160		resu lts = getR esults();
				161		}
				162		} catch (Aud itExceptio n ex) {
				163		logger.l og(Level.S EVERE, "Er ror gettin g report r esults: ", ex);
				164		markDocu mentFailur e(document Date);
				165		return;
				166		} catch (Dir ectService Exception ex) {
				167		logger.l og(Level.S EVERE, "Er ror gettin g report r esults: ", ex);
				168		markDocu mentFailur e(document Date);
				169		return;
				170		}
				171
				172		if (document Type != nu ll && docu mentType.e quals("csv ")) {
				173		createAn dStoreCsvD ocument(re sults, doc umentDate) ;
				174		} else {
				175		createAn dStoreExce lDocument( results, d ocumentDat e);
				176		}
				177		if ("csv".eq uals(docum entType)) {
				178		logger.l og(Level.S EVERE, "EX PORT_CSV_S CHEDULED_E ND_" + Thr ead.curren tThread(). getId() + " " + Syst em.current TimeMillis ());
				179		} else {
				180		logger.l og(Level.S EVERE, "EX PORT_EXCEL _SCHEDULED _END_" + T hread.curr entThread( ).getId() + " " + Sy stem.curre ntTimeMill is());
				181		}
				182		}
				183
				184		privat e void cre ateAndStor eExcelDocu ment(List< Map<String , Object>> results, Date docum entDate) {
				185		// Clear rep ort map if there are no result s
				186		if (NullChec ker.isNull OrEmpty(re sults)) {
				187		reportMa p.clear();
				188		reportMa p.put("", "No record s were fou nd.");
				189		}
				190
				191		Ma p<String, List<Objec t>> option alRows = n ull;
				192		if (hasOptio nalRows) {
				193		try {
				194		opti onalRows = generateO ptionalRow s();
				195		} catch (NoSuchFie ldExceptio n \| Illega lArgumentE xception \| IllegalAc cessExcept ion ex) {
				196		logg er.log(Lev el.SEVERE, "An optio nal row do es not hav e a corres ponding ac cessible f ield: ", e x);
				197		}
				198		}
				199
				200		// Create wo rkbook
				201		fi nal Workbo ok wb = ex Export.exp ortToExcel (title, ti tle, repor tMap, resu lts, filte rMap, opti onalRows);
				202
				203		tr y {
				204		byte[] d ocBytes = exExport.g etExcelAsB ytes(wb);
				205
				206		// Get i ncomplete user doc r ow to fill in conten t
				207		UserDocu ment blank Doc = user DocDao.fin dByCreatio nDate(docu mentDate);
				208		if (blan kDoc != nu ll) {
				209		blan kDoc.setCo ntent(docB ytes);
				210		blan kDoc.setSt atus("COMP LETED");
				211		user DocDao.edi t(blankDoc );
				212		} else {
				213		User Document n ewDoc = ne w UserDocu ment(title , new Date (), userId , docBytes , "COMPLET ED", "Exce l");
				214		user DocDao.cre ate(newDoc );
				215		}
				216		} catch (Exc eption ex) {
				217		logger.l og(Level.S EVERE, "Er ror storin g Excel ex port: ", e x);
				218		markDocu mentFailur e(document Date);
				219		}
				220		}
				221
				222		privat e void cre ateAndStor eCsvDocume nt(List<Ma p<String, Object>> r esults, Da te documen tDate) {
				223
				224		St ringBuilde r sbOutput ;
				225		if (NullChec ker.isNull OrEmpty(re sults)) {
				226		sbOutput = new Str ingBuilder ();
				227		sbOutput .append("N o records were found .");
				228		} else {
				229		SimpleDa teFormat d t = new Si mpleDateFo rmat("MM/d d/yyyy");
				230		// Alloc ate string builder b ased on th e number o f rows, bu t no large r than 20M B.
				231		if (resu lts.size() > 100000) {
				232		sbOu tput = ne w StringBu ilder(2000 0000);
				233		} else {
				234		sbOu tput = ne w StringBu ilder(resu lts.size() * 200);
				235		}
				236
				237		// Appen d column h eaders
				238		for (Str ing headin g : report Map.keySet ()) {
				239		sbOu tput.appen d(heading) ;
				240		sbOu tput.appen d(",");
				241		}
				242		sbOutput .append("\ n");
				243
				244		// Appen d report d ata
				245		for (Map <String, O bject> row : results ) {
				246		// C reate the row of dat a
				247		Stri ng separat or = "";
				248		for (String da taField : reportMap. values()) {
				249		sbOutput.a ppend(sepa rator);
				250		separator = ",";
				251		// Include escape ch aracter.
				252		sbOutput.a ppend("\"" );
				253
				254		if (NullCh ecker.isNu llOrEmpty( row.get(da taField))) {
				255		sbOutp ut.append( "");
				256		} else {
				257		if (da taField.co ntains("Da te")) {
				258		// Format da tes. patie ntDateForm atted is a n exceptio n - comes pre-format ted
				259		if (dataFiel d.equals(" patientDat eFormatted ")) {
				260		sbOutput .append(ro w.get(data Field));
				261		} else {
				262		sbOutput .append(ro w.get(data Field));
				263		}
				264		} else if (dataF ield.toLow erCase().c ontains("o id") && !N ullChecker .isNullOrE mpty(row.g et(dataFie ld))) {
				265		sb Output.app end(Report Helper.tri mOrgOid((S tring)row. get(dataFi eld)));
				266		} else {
				267		// Else prin t the data as-is.
				268		sb Output.app end(row.ge t(dataFiel d));
				269		}
				270		}
				271		// Include closing e scape char acter.
				272		sbOutput.a ppend("\"" );
				273		}
				274		sbOu tput.appen d("\n");
				275		}
				276		}
				277
				278		by te[] docBy tes = Stri ng.valueOf (sbOutput) .getBytes( );
				279
				280		tr y {
				281		// Get i ncomplete user doc r ow to fill in conten t
				282		UserDocu ment blank Doc = user DocDao.fin dByCreatio nDate(docu mentDate);
				283		if (blan kDoc != nu ll) {
				284		blan kDoc.setCo ntent(docB ytes);
				285		blan kDoc.setSt atus("COMP LETED");
				286		user DocDao.edi t(blankDoc );
				287		} else {
				288		User Document n ewDoc = ne w UserDocu ment(title , new Date (), userId , docBytes , "COMPLET ED", "CSV" );
				289		user DocDao.cre ate(newDoc );
				290		}
				291		} catch (Exc eption ex) {
				292		logger.l og(Level.S EVERE, "Er ror storin g CSV expo rt: ", ex) ;
				293		markDocu mentFailur e(document Date);
				294		}
				295		}
				296
				297		/**
				298		* Cre ates new t hread and starts it
				299		*/
				300		public void star t() {
				301		if (thread = = null) {
				302		thread = new Threa d(this, th readName);
				303		thread.s tart();
				304		}
				305		}
				306
				307		privat e void mar kDocumentF ailure(Dat e document Date) {
				308		Us erDocument failedDoc = userDoc Dao.findBy CreationDa te(documen tDate);
				309		if (failedDo c != null) {
				310		failedDo c.setStatu s(title);
				311		try {
				312		user DocDao.edi t(failedDo c);
				313		} catch (Exception ex) {
				314		logg er.log(Lev el.SEVERE, "Failed u ser docume nt does no t exist: " , ex);
				315		}
				316		}
				317		}
				318
				319		// Han dle the ca lculation of optiona l row tota ls here.
				320		privat e Map<Stri ng, List<O bject>> ge nerateOpti onalRows() throws No SuchFieldE xception, IllegalArg umentExcep tion, Ille galAccessE xception {
				321		Ma p<String, List<Objec t>> option alRows = n ew LinkedH ashMap<>() ;
				322
				323		fo r(Map.Entr y<String, String> en try : opti onalRowsMa p.entrySet ()) {
				324		if(!entr y.getKey() .isEmpty() ) {
				325		List <Object> o ptionalRow List = new ArrayList <>();
				326		opti onalRowLis t.add(getC lass().get DeclaredFi eld(entry. getKey()). get(this)) ;
				327		opti onalRows.p ut(entry.g etValue(), optionalR owList);
				328		} else {
				329		List <Object> b lank = new ArrayList <>();
				330		opti onalRows.p ut("", bla nk);
				331		}
				332		}
				333
				334		re turn optio nalRows;
				335		}
				336
				337		privat e List<Map <String, O bject>> ge tResults() throws Au ditExcepti on, Direct ServiceExc eption {
				338		fi nal String icn = (St ring) attr ibutes.get ("icn");
				339		fi nal String ssn = (St ring) attr ibutes.get ("ssn");
				340		fi nal String lastName = (String) attribute s.get("las tName");
				341		fi nal String firstName = (String ) attribut es.get("fi rstName");
				342		fi nal String queryUser Id = (Stri ng) attrib utes.get(" userId");
				343		fi nal Date s d = (Date) attribute s.get("sta rtDate");
				344		fi nal Date e d = (Date) attribute s.get("end Date");
				345		fi nal String purposeOf Use = (Str ing) attri butes.get( "purposeOf Use");
				346		fi nal String facility = (String) attribute s.get("fac ility");
				347		fi nal String organizat ion = (Str ing) attri butes.get( "organizat ion");
				348		fi nal String remoteOrg anization = (String) attribute s.get("rem oteOrganiz ation");
				349		fi nal int pa tientTypes = (Intege r) attribu tes.get("p atientType s");
				350		St ring mpiMa tch = (Str ing) attri butes.get( "mpiMatch" );
				351		// sort
				352		fi nal String sortValue = (String ) attribut es.get("so rtValue");
				353		fi nal String sortDirec tion = (St ring) attr ibutes.get ("sortDire ction");
				354		// action va lues
				355		fi nal Action ValuesType actionsTy pe = (Acti onValuesTy pe) attrib utes.get(" actionsTyp e");
				356
				357		if (NullChec ker.isNotE mpty(mpiMa tch) && mp iMatch.equ alsIgnoreC ase("all") ) {
				358		mpiMatch = null;
				359		}
				360
				361		fi nal GetAud its getAud itsRequest = new Get Audits();
				362		if (NullChec ker.isNotE mpty(sd)) {
				363		getAudit sRequest.s etFromDate (Gregorian DateUtil
				364		.getGregor ianCalenda rByDate(sd ));
				365		}
				366		if (NullChec ker.isNotE mpty(ed)) {
				367		getAudit sRequest.s etToDate(G regorianDa teUtil
				368		.getGregor ianCalenda rByDate(ed ));
				369		}
				370
				371		// Set Patie nt Types
				372		ge tAuditsReq uest.setPa tientTypes (patientTy pes);
				373
				374		// Set Patie nt Ids
				375		if (NullChec ker.isNotE mpty(icn)) {
				376		final St ringValues Type patie ntIds = ne w StringVa luesType() ;
				377		patientI ds.getValu e().add(ic n);
				378		patientI ds.setNotI n(false);
				379		getAudit sRequest.s etPatientI ds(patient Ids);
				380		}
				381		// Set SSN
				382		if (NullChec ker.isNotE mpty(ssn)) {
				383		String[] ssns = ss n.split(", ");
				384		final St ringValues Type patie ntSSNs = n ew StringV aluesType( );
				385		patientS SNs.getVal ue().addAl l(Arrays.a sList(ssns ));
				386		patientS SNs.setNot In(false);
				387		getAudit sRequest.s etPatientS SNs(patien tSSNs);
				388		}
				389		// Set Last Name
				390		if (NullChec ker.isNotE mpty(lastN ame)) {
				391		final St ringValues Type patie ntLastName s = new St ringValues Type();
				392		patientL astNames.g etValue(). add(lastNa me);
				393		patientL astNames.s etNotIn(fa lse);
				394		getAudit sRequest.s etPatientL astNames(p atientLast Names);
				395		}
				396		// Set First Name
				397		if (NullChec ker.isNotE mpty(first Name)) {
				398		final St ringValues Type patie ntFirstNam es = new S tringValue sType();
				399		patientF irstNames. getValue() .add(first Name);
				400		patientF irstNames. setNotIn(f alse);
				401		getAudit sRequest.s etPatientG ivenNames( patientFir stNames);
				402		}
				403		// Set User ID
				404		if (NullChec ker.isNotE mpty(query UserId)) {
				405		final St ringValues Type userI ds = new S tringValue sType();
				406		userIds. getValue() .add(query UserId);
				407		userIds. setNotIn(f alse);
				408		getAudit sRequest.s etUserIds( userIds);
				409		}
				410		// Set Purpo se of Use
				411		if ( !NullCheck er.isNullO rEmpty(pur poseOfUse) ) {
				412		final StringValu esType pur poseForUse s = new St ringValues Type();
				413		purpos eForUses.g etValue(). add(purpos eOfUse);
				414		purpos eForUses.s etNotIn(fa lse);
				415		getAud itsRequest .setPurpos eForUses(p urposeForU ses);
				416		}
				417		// Set Facil ity Ids
				418		if ( NullChecke r.isNotEmp ty(facilit y)) {
				419		final StringValu esType fac ilityIds = new Strin gValuesTyp e();
				420		facili tyIds.setN otIn(false );
				421		facili tyIds.getV alue().add (facility) ;
				422		getAud itsRequest .setPatien tFacilityN umbers(fac ilityIds);
				423		}
				424		// Set Organ ization Id s
				425		if (NullChec ker.isNotE mpty(organ ization)) {
				426		final StringValu esType org anizationI ds = new S tringValue sType();
				427		organi zationIds. setNotIn(f alse);
				428		organi zationIds. getValue() .add(remot eOrganizat ion);
				429		getAud itsRequest .setOrgani zationIds( organizati onIds);
				430		} el se if ("Di sclosures Detail Rep ort".equal s(title)) {
				431		// For D isclosure Detailed r eport:
				432		// input orgs are empty - in tent is to retrieve all orgs e xcept VA
				433		final St ringValues Type organ izationIds = new Str ingValuesT ype();
				434		organiza tionIds.se tNotIn(tru e);
				435		organiza tionIds.ge tValue().a dd(cmsHelp er.getComp leteHomeCo mmunityId( ));
				436		getAudit sRequest.s etOrganiza tionIds(or ganization Ids);
				437		}
				438		// Set Remot e Organiza tion Ids
				439		if ( NullChecke r.isNotEmp ty(remoteO rganizatio n)) {
				440		final StringValu esType rem oteOrganiz ationIds = new Strin gValuesTyp e();
				441		remote Organizati onIds.setN otIn(false );
				442		remote Organizati onIds.getV alue().add (remoteOrg anization) ;
				443		getAud itsRequest .setRemote Organizati onIds(remo teOrganiza tionIds);
				444		}
				445
				446		// sorting
				447		if (NullChec ker.isNotE mpty(sortV alue)) {
				448		final So rtFieldTyp e sortFiel d = new So rtFieldTyp e();
				449		sortFiel d.setField (FieldType .fromValue (sortValue ));
				450		if ("DES C".equalsI gnoreCase( sortDirect ion)) {
				451		sort Field.setD irection(S ortDirecti on.DESC);
				452		} else {
				453		sort Field.setD irection(S ortDirecti on.ASC);
				454		}
				455		final So rtFieldsTy pe sortFie ldsType = new SortFi eldsType() ;
				456		sortFiel dsType.get SortField( ).add(sort Field);
				457		getAudit sRequest.s etSortFiel ds(sortFie ldsType);
				458		}
				459
				460		// Set Actio n Types
				461		ge tAuditsReq uest.setAc tions(acti onsType);
				462		// Set MPI M atch
				463		if ("all".eq uals(mpiMa tch) \|\| Nu llChecker. isEmpty(mp iMatch)) {
				464		getAudit sRequest.s etDetails( null);
				465		} else {
				466		getAudit sRequest.s etDetails( mpiMatch);
				467		}
				468		// Set Page Informatio n for all results
				469		fi nal PageIn foType pag eInfoType = new Page InfoType() ;
				470		pa geInfoType .setPageNu mber(0);
				471		if ("direct" .equals(re portSource )) {
				472		pageInfo Type.setPa geSize(Int eger.MAX_V ALUE);
				473		} else {
				474		pageInfo Type.setPa geSize(-1) ;
				475		}
				476		ge tAuditsReq uest.setPa geInfo(pag eInfoType) ;
				477
				478		fi nal List<M ap<String, Object>> results = new ArrayL ist<>();
				479		tr y {
				480		GetAudit sResponse queryRespo nse;
				481		if ("dir ect".equal s(reportSo urce)) {
				482		quer yResponse = this.dir ectAuditMa nager.getA udits(getA uditsReque st);
				483		} else {
				484		quer yResponse = this.ada pterAuditM anager.get Audits(get AuditsRequ est);
				485		}
				486
				487		if (Null Checker.is NotEmpty(q ueryRespon se)
				488		&& NullChe cker.isNot Empty(quer yResponse. getAudits( ))
				489		&& NullChe cker.isNot Empty(quer yResponse. getAudits( ).getAudit ())) {
				490		fina l List<Aud itType> au ditTypeLis t = queryR esponse.ge tAudits(). getAudit() ;
				491		Hash Set<String > uniqueRe alPatients Set = new HashSet<>( );
				492		Hash Set<String > uniqueTe stPatients Set = new HashSet<>( );
				493		for (final Aud itType aud itType : a uditTypeLi st) {
				494		final Map< String, Ob ject> resu ltMap = ne w HashMap< >();
				495		String exp lanationOf Failure = "N/A";
				496		String pat ientFirstN ame = "";
				497		String pat ientLastNa me = "";
				498		String pat ientMiddle Name = "";
				499		String pat ientSSN = "";
				500		Boolean mv iFindMatch Failed = n ull;
				501
				502		String det ails = Rep ortDataPro cessor.nul lEmptyRepl aceWithUnk nown(audit Type.getDe tails());
				503		if (detail s.startsWi th("QUERY FAILED")) {
				504		explan ationOfFai lure = "MV I: Query F ailed";
				505		mviFin dMatchFail ed = true;
				506		} else if (details.s tartsWith( "MATCH FAI LED")) {
				507		explan ationOfFai lure = "MV I: Match N ot Found";
				508		mviFin dMatchFail ed = true;
				509		} else if (details.s tartsWith( "AMBIGUOUS FAILED")) {
				510		explan ationOfFai lure = "MV I: Ambiguo us Match";
				511		mviFin dMatchFail ed = true;
				512		} else if (details.s tartsWith( "MATCH FOU ND")) {
				513		mviFin dMatchFail ed = false ;
				514		}
				515		resultMap. put("failu reExplanat ion", expl anationOfF ailure);
				516
				517		if (Boolea n.TRUE.equ als(mviFin dMatchFail ed)) {
				518		patien tFirstName = reportH elper.extr actFromDet ails(detai ls, "FIRST NAME");
				519		patien tLastName = reportHe lper.extra ctFromDeta ils(detail s, "LASTNA ME");
				520		patien tMiddleNam e = report Helper.ext ractFromDe tails(deta ils, "MIDD LENAME");
				521		patien tSSN = rep ortHelper. extractFro mDetails(d etails, "S SN");
				522		}
				523		if (patien tSSN.lengt h() == 0) {
				524		patien tSSN = aud itType.get PatientSSN ();
				525		}
				526
				527		// SSN
				528		ReportData Processor. addSsnToRe sultMap(re sultMap, p atientSSN) ;
				529
				530		boolean is TestPatien t = report Helper.isT estPatient (resultMap .get("ssn" ).toString ());
				531
				532		if (NullCh ecker.isNo tEmpty(pat ientSSN)) {
				533		if (is TestPatien t) {
				534		if (!uniqueT estPatient sSet.conta ins(patien tSSN)) {
				535		uniqueTe stPatients Set.add(pa tientSSN);
				536		}
				537		} else {
				538		if (!uniqueR ealPatient sSet.conta ins(patien tSSN)) {
				539		uniqueRe alPatients Set.add(pa tientSSN);
				540		}
				541		}
				542		}
				543
				544		if (isTest Patient) {
				545		testPa tientMessa ges++;
				546		if (Bo olean.TRUE .equals(mv iFindMatch Failed)) {
				547		te stPatientF ails++;
				548		} else if (Boole an.FALSE.e quals(mviF indMatchFa iled)) {
				549		te stPatientM atches++;
				550		}
				551		} else {
				552		realPa tientMessa ges++;
				553		if (Bo olean.TRUE .equals(mv iFindMatch Failed)) {
				554		re alPatientF ails++;
				555		} else if (Boole an.FALSE.e quals(mviF indMatchFa iled)) {
				556		re alPatientM atches++;
				557		}
				558		}
				559
				560		// First n ame.
				561		if (patien tFirstName .length() == 0) {
				562		patien tFirstName = ReportD ataProcess or.nullEmp tyReplaceW ithUnknown (auditType .getPatien tGivenName ());
				563		}
				564		resultMap. put("first Name", pat ientFirstN ame);
				565
				566		// Middle name.
				567		if (patien tMiddleNam e.length() == 0) {
				568		patien tMiddleNam e = Repor tDataProce ssor.nullE mptyReplac eWithUnkno wn(auditTy pe.getPati entMiddleN ame());
				569		}
				570		if ("Unkno wn".equals IgnoreCase (patientMi ddleName)) {
				571		patien tMiddleNam e = "";
				572		}
				573		resultMap. put("middl eName", pa tientMiddl eName);
				574
				575		// Last na me.
				576		if (patien tLastName. length() = = 0) {
				577		patien tLastName = ReportDa taProcesso r.nullEmpt yReplaceWi thUnknown( auditType. getPatient LastName() );
				578		}
				579		resultMap. put("lastN ame", pati entLastNam e);
				580
				581		// Patient preferred facility
				582		resultMap. put("patie ntFacility Name", Rep ortDataPro cessor
				583		.fix Station(au ditType.ge tPatientFa cilityName ()));
				584		resultMap. put("patie ntFacility Number", R eportDataP rocessor
				585		.nul lEmptyRepl aceWithUnk nown(audit Type
				586		.getPati entFacilit yNumber()) );
				587
				588		resultMap. put("organ izationNam e", report Helper.fin dOrganizat ionByOid(a uditType.g etOrganiza tionId(), auditType. getOrganiz ationName( )));
				589		resultMap. put("facil ityOid", R eportDataP rocessor
				590		.nullE mptyReplac eWithUnkno wn(auditTy pe
				591		.g etOrganiza tionId())) ;
				592
				593		resultMap. put("remot eOrganizat ionName", reportHelp er.findOrg anizationB yOid(audit Type.getRe moteOrgani zationId() ,
				594		au ditType.ge tRemoteOrg anizationN ame()));
				595
				596		resultMap. put("remot eFacilityO id", Repor tDataProce ssor.nullE mptyReplac eWithUnkno wn(
				597		au ditType.ge tRemoteOrg anizationI d()));
				598
				599		resultMap. put("icn", ReportDat aProcessor .nullEmpty ReplaceWit hUnknown(a uditType.g etPatientI d()));
				600		resultMap. put("audit Time", Gre gorianDate Util.getDa teFromGreg orianCalen dar(auditT ype.getAud itTime())) ;
				601		resultMap. put("audit TimeFormat ted",
				602		re portHelper .getFormat tedDateTim e(
				603		Gr egorianDat eUtil
				604		.g etDateFrom GregorianC alendar(au ditType
				605		.g etAuditTim e())));
				606
				607		String use rIdString = ReportDa taProcesso r.nullEmpt yReplaceWi thUnknown( auditType. getUserId( )).replace (" ? ", " ");
				608		resultMap. put("userI d", userId String);
				609
				610		//Parse th e user id field for facility c ode and us er name on ly if this is Receiv ed Documen ts Detaile d Report
				611		if ("RECEI VED EHEALT H EXCHANGE DOCUMENTS DETAIL RE PORT".equa ls(this.ti tle.toUppe rCase())) {
				612		if (use rIdString. length() > 4 && user IdString.s ubstring(0 ,4).matche s("^\\d{3} :")){
				613		re sultMap.pu t("userFac ilityCode" , userIdSt ring.subst ring(0,3)) ;
				614		if (facility Helper != null) {
				615		resultMa p.put("use rFacilityN ame", faci lityHelper .getFacili tyNameBySt ationId(us erIdString .substring (0,3)));
				616		}
				617		}
				618
				619		if (us erIdString .indexOf(" CN=") > 0) {
				620		re sultMap.pu t("userNam e",userIdS tring.subs tring((use rIdString. indexOf("C N=") + 3),
				621		userIdSt ring.index Of(",", us erIdString .indexOf(" CN="))));
				622		}
				623		}
				624
				625		resultMap. put("purpo seForUse", ReportDat aProcessor
				626		.n ullEmptyRe placeWithU nknown(aud itType
				627		.g etPurposeF orUse()));
				628
				629		if (NullCh ecker.isNo tEmpty(aud itType.get Action())) {
				630		result Map.put("m essage", a uditType.g etAction() .name());
				631		}
				632
				633		details = processDet ails(detai ls);
				634
				635		resultMap. put("detai ls", detai ls);
				636
				637		resultMap. put("docum entId", Re portDataPr ocessor
				638		.nul lEmptyRepl aceWithUnk nown(audit Type
				639		.getDocu mentId())) ;
				640		resultMap. put("docum entTitle", ReportDat aProcessor
				641		.nul lEmptyRepl aceWithUnk nown(audit Type
				642		.getDocu mentTitle( )));
				643		resultMap. put("roleN ame", Repo rtDataProc essor
				644		.nul lEmptyRepl aceWithUnk nown(audit Type
				645		.getRole Name()));
				646
				647		results.ad d(resultMa p);
				648		}
				649		uniq ueRealPati ents = uni queRealPat ientsSet.s ize();
				650		uniq ueTestPati ents = uni queTestPat ientsSet.s ize();
				651		}
				652
				653		return r esults;
				654
				655		} catch (fin al AuditEx ception ex ) {
				656		throw ne w AuditExc eption();
				657		} catch (fin al DirectS erviceExce ption ex) {
				658		throw ne w DirectSe rviceExcep tion();
				659		}
				660
				661		}
				662
				663		privat e List<Map <String, O bject>> ge tSummaryRe sults() th rows Audit Exception {
				664		fi nal String queryUser Id = (Stri ng) attrib utes.get(" userId");
				665		fi nal Date s d = (Date) attribute s.get("sta rtDate");
				666		fi nal Date e d = (Date) attribute s.get("end Date");
				667		fi nal String patientFa cility = ( String) at tributes.g et("facili ty");
				668		fi nal String organizat ion = (Str ing) attri butes.get( "organizat ion");
				669		fi nal String remoteOrg anization = (String) attribute s.get("rem oteOrganiz ation");
				670		fi nal int pa tientTypes = (Intege r) attribu tes.get("p atientType s");
				671		// sort
				672		fi nal String sortValue = (String ) attribut es.get("so rtValue");
				673		fi nal String sortDirec tion = (St ring) attr ibutes.get ("sortDire ction");
				674		// action va lues
				675		fi nal Action ValuesType actionsTy pe = (Acti onValuesTy pe) attrib utes.get(" actionsTyp e");
				676		// group by values
				677		fi nal GroupB yFieldsTyp e groupByF ieldsType = (GroupBy FieldsType ) attribut es.get("gr oupByField sType");
				678
				679		fi nal GetAud itsSummary getAudits SummaryReq uest = new GetAudits Summary();
				680
				681		// Set start date
				682		if (NullChec ker.isNotE mpty(sd)) {
				683		getAudit sSummaryRe quest.setF romDate(Gr egorianDat eUtil.getG regorianCa lendarByDa te(sd));
				684		}
				685
				686		// Set end d ate
				687		if (NullChec ker.isNotE mpty(ed)) {
				688		getAudit sSummaryRe quest.setT oDate(Greg orianDateU til.getGre gorianCale ndarByDate (ed));
				689		}
				690
				691		// Set user ID
				692		if (NullChec ker.isNotE mpty(query UserId)) {
				693		final St ringValues Type userI dValue = n ew StringV aluesType( );
				694		userIdVa lue.getVal ue().add(q ueryUserId );
				695		userIdVa lue.setNot In(false);
				696		getAudit sSummaryRe quest.setU serIds(use rIdValue);
				697		}
				698
				699		// Set patie nt preferr ed facilit y
				700		if (!NullChe cker.isNul lOrEmpty(p atientFaci lity)) {
				701		final St ringValues Type patie ntFacilyNu mber = new StringVal uesType();
				702		patientF acilyNumbe r.setNotIn (false);
				703		final Li st<String> patientFa cilyNumber List = pat ientFacily Number.get Value();
				704		patientF acilyNumbe rList.add( patientFac ility);
				705		getAudit sSummaryRe quest.setP atientFaci lityNumber s(patientF acilyNumbe r);
				706		}
				707
				708		// Set partn er organiz ation
				709		if (NullChec ker.isNotE mpty(organ ization)) {
				710		final St ringValues Type orgTy pes = new StringValu esType();
				711		orgTypes .getValue( ).add(orga nization);
				712		getAudit sSummaryRe quest.setO rganizatio nIds(orgTy pes);
				713		}
				714
				715		if (NullChec ker.isNotE mpty(remot eOrganizat ion)) {
				716		final St ringValues Type remot eOrgTypes = new Stri ngValuesTy pe();
				717		remoteOr gTypes.get Value().ad d(remoteOr ganization );
				718		getAudit sSummaryRe quest.setR emoteOrgan izationIds (remoteOrg Types);
				719		}
				720
				721		// Set patie nt types
				722		ge tAuditsSum maryReques t.setPatie ntTypes(pa tientTypes );
				723
				724		// Set actio n types
				725		ge tAuditsSum maryReques t.setActio ns(actions Type);
				726
				727		// Group by
				728		ge tAuditsSum maryReques t.setGroup ByFields(g roupByFiel dsType);
				729
				730		Li st<Map<Str ing, Objec t>> result s = null;
				731		tr y {
				732		// Get s ummary lis t from Exc hange
				733		GetAudit sSummaryRe sponse get AuditsSumm aryRespons e = this.a dapterAudi tManager.g etAuditSum mary(getAu ditsSummar yRequest);
				734
				735		// Const ruct resul ts for the jsp page
				736		results = new Arra yList<>();
				737		final Au ditSummari esType aud itSummarie sType = ge tAuditsSum maryRespon se.getAudi tSummaries ();
				738
				739		List<Aud itSummaryT ype> audit Summary = new ArrayL ist<>();
				740		if (audi tSummaries Type != nu ll) {
				741		audi tSummary = auditSumm ariesType. getAuditSu mmary();
				742		}
				743
				744		for (fin al AuditSu mmaryType auditSumma ryType : a uditSummar y) {
				745		fina l Map<Stri ng, Object > resultMa p = new Ha shMap<>();
				746		fina l long cou nt = audit SummaryTyp e.getCount ();
				747		fina l SummaryF ieldsType summaryFie lds = audi tSummaryTy pe.getSumm aryFields( );
				748		fina l List<Str ing> summa ryField = summaryFie lds.getSum maryField( );
				749
				750		if ( NullChecke r.isEmpty( summaryFie ld)) {
				751		continue;
				752		}
				753
				754		if ( summaryFie ld.size() < 4) {
				755		continue;
				756		}
				757
				758		// P artner org anization
				759		Orga nizationTy pe organiz ationType = null;
				760		if ( NullChecke r.isNotEmp ty(summary Field.get( 0))) {
				761		organizati onType = ( cmsHelper. getOrganiz ationByHom eCommunity Id(summary Field.get( 0).replace ("urn:oid: ", "")));
				762		}
				763		if ( organizati onType != null) {
				764		resultMap. put("partn erOrg", Re portDataPr ocessor.nu llEmptyRep laceWithUn known(orga nizationTy pe.getOrgN ame()));
				765		} el se {
				766		resultMap. put("partn erOrg", Re portDataPr ocessor.nu llEmptyRep laceWithUn known(summ aryField.g et(3)));
				767		}
				768
				769		// P atient pre ferred fac ility
				770		fina l String a dapterVAFa cility = s ummaryFiel d.get(1);
				771		Stri ng vaFacil ity;
				772		if ( ReportData Processor. isValidSta tion(adapt erVAFacili ty)) {
				773		vaFacility = facilit yHelper.ge tFacilityN ameByStati onId(adapt erVAFacili ty);
				774		if (NullCh ecker.isEm pty(vaFaci lity)) {
				775		vaFaci lity = sum maryField. get(2);
				776		}
				777		} el se {
				778		vaFacility = summary Field.get( 2);
				779		}
				780		resu ltMap.put( "vaFacilit y", Report DataProces sor.fixSta tion(vaFac ility));
				781
				782		// A udits coun t
				783		resu ltMap.put( "auditsCou nt", count );
				784
				785		// T he rest of the value s are simp ly copied from audit Summary
				786		resu ltMap.put( "countUniq ueRealPati ents", Str ingUtils.i sNumeric(s ummaryFiel d.get(4)) ? Long.par seLong(sum maryField. get(4)) : 0);
				787		resu ltMap.put( "countUniq ueTestPati ents", Str ingUtils.i sNumeric(s ummaryFiel d.get(5)) ? Long.par seLong(sum maryField. get(5)) : 0);
				788		resu ltMap.put( "matchesFo undRealPat ients", St ringUtils. isNumeric( summaryFie ld.get(6)) ? Long.pa rseLong(su mmaryField .get(6)) : 0);
				789		resu ltMap.put( "matchesFo undTestPat ients", St ringUtils. isNumeric( summaryFie ld.get(7)) ? Long.pa rseLong(su mmaryField .get(7)) : 0);
				790		resu ltMap.put( "matchFail sRealPatie nts", Stri ngUtils.is Numeric(su mmaryField .get(8)) ? Long.pars eLong(summ aryField.g et(8)) : 0 );
				791		resu ltMap.put( "matchFail sTestPatie nts", Stri ngUtils.is Numeric(su mmaryField .get(9)) ? Long.pars eLong(summ aryField.g et(9)) : 0 );
				792
				793		resu lts.add(re sultMap);
				794		tota lCount += count;
				795		}
				796
				797		// Sort
				798		if (Null Checker.is NotEmpty(s ortValue) && NullChe cker.isNot Empty(sort Direction) ) {
				799		bool ean ascend ing = !sor tDirection .equalsIgn oreCase("D ESC");
				800		fina l BubbleSo rtListMap bSorter = new Bubble SortListMa p();
				801		resu lts = bSor ter.sortBy Column(res ults, sort Value, asc ending);
				802		}
				803		} catch (fin al AuditEx ception ex ) {
				804		throw ne w AuditExc eption(ex) ;
				805		}
				806
				807		re turn resul ts;
				808		}
				809
				810		privat e List<Map <String, O bject>> ge tAuditedCo nsentResul ts() throw s ServletE xception {
				811		fi nal Audite dConsentDA O.DetailRe quest req = auditedC onsentDAO. new Detail Request();
				812
				813		re q.patientF irstName = (String) attributes .get("firs tName");
				814		re q.patientL astName = (String) a ttributes. get("lastN ame");
				815		re q.patientS sn = (Stri ng) attrib utes.get(" ssn");
				816		re q.stationN umbers = ( String) at tributes.g et("statio nNumbers") ;
				817		re q.consentT ype = (Str ing) attri butes.get( "consentTy pe");
				818		re q.inactiva tionReason = (String ) attribut es.get("in activation Reason");
				819		re q.startDat e = (Date) attribute s.get("sta rtDate");
				820		re q.endDate = (Date) a ttributes. get("endDa te");
				821		re q.patientT ypes = (In teger) att ributes.ge t("patient Types");
				822		re q.userId = (String) attributes .get("user Id");
				823		re q.includeU nknownVisn = (Boolea n) attribu tes.get("i ncludeUnkn ownVisn");
				824		re q.sortFiel d = (Strin g) attribu tes.get("s ortValue") ;
				825		re q.sortDire ction = (S tring) att ributes.ge t("sortDir ection");
				826		re q.currentP age = 0;
				827		re q.pageSize = -1;
				828
				829		Li st<String> actionTyp es = (List <String>) attributes .get("acti onTypes");
				830
				831		// The resul t of the q uery is a list of ar rays.
				832		// Each arra y is a [Au ditedConse nt, Facili ty, Visn]
				833		Li st<Object> auditedCo nsentExLis t = audite dConsentDA O.getEvent s(req);
				834
				835		fi nal List<M ap<String, Object>> results = new ArrayL ist<>();
				836		if (NullChec ker.isNotE mpty(audit edConsentE xList)) {
				837		for (fin al Object o : audite dConsentEx List) {
				838		Audi tedConsent Ex auditTy pe = (Audi tedConsent Ex) o;
				839
				840		fina l Map<Stri ng, Object > resultMa p = new Ha shMap<>();
				841
				842		// R eplace SSN with Mask
				843		Repo rtDataProc essor.addS snToResult Map(result Map, audit Type.getPa tientSsn() );
				844
				845		resu ltMap.put( "icn", aud itType.get PatientId( ));
				846		resu ltMap.put( "auditTime ", auditTy pe.getTime OfEvent()) ;
				847		resu ltMap.put( "auditTime Formatted" , reportHe lper
				848		.getFormat tedDateTim e(auditTyp e.getTimeO fEvent())) ;
				849		resu ltMap.put( "userId", auditType. getUserId( ));
				850		resu ltMap.put( "actionTyp e", auditT ype.getAct ionType()) ;
				851
				852		Stri ng consent TypeRow = auditType. getConsent Type();
				853		if ( consentTyp eRow.conta ins("NwHIN ")) {
				854		consentTyp eRow = con sentTypeRo w.replace( "NwHIN", C onstants.g etOrganiza tionName() );
				855		}
				856		resu ltMap.put( "consentTy pe", conse ntTypeRow) ;
				857		resu ltMap.put( "firstName ", auditTy pe.getPati entGivenNa me());
				858		resu ltMap.put( "lastName" , auditTyp e.getPatie ntLastName ());
				859		resu ltMap.put( "purposeOf Use", audi tType.getP ouValue()) ;
				860
				861		Stri ng inactiv ationReaso nRow = aud itType.get OptoutReas on();
				862		resu ltMap.put( "inactivat ionReason" , inactiva tionReason Row);
				863		resu ltMap.put( "patientDa te", audit Type.getCr eatedDate( ));
				864		resu ltMap.put( "patientDa teFormatte d", report Helper
				865		.getFormat tedDate(au ditType.ge tCreatedDa te()));
				866
				867		resu ltMap.put( "facilityN ame", Repo rtDataProc essor
				868		.fixStatio n(auditTyp e.getFacil ityName()) );
				869		resu ltMap.put( "facilityI d", auditT ype.getFac ility());
				870		resu ltMap.put( "visnName" , NullChec ker.isNull OrEmpty(au ditType.ge tVisnName( )) ? "Unkn own" : aud itType.get VisnName() );
				871
				872		if ( actionType s.contains (auditType .getAction Type())) {
				873		resultMap. put("audit Id", audit Type.getCo nsentAudit Id());
				874		}
				875		resu lts.add(Fi eldChecks. replaceEmp tyOrNullWi thSpace(re sultMap));
				876		}
				877		}
				878
				879		re turn resul ts;
				880		}
				881
				882		public List<Map< String, Ob ject>> get PatientCon sentDirRes ults() {
				883
				884		Da te startDa te = (Date ) attribut es.get("st artDate");
				885		Da te endDate = (Date) attributes .get("endD ate");
				886		fi nal Patien tConsentDi rDAO.Searc hRequest s earchReque st = patie ntConsentD irDAO.new SearchRequ est();
				887
				888		se archReques t.startDat e = startD ate;
				889		se archReques t.endDate = endDate;
				890		se archReques t.stationN umbers = ( String) at tributes.g et("statio nNumbers") ;
				891		se archReques t.includeU nknownVisn = (Boolea n) attribu tes.get("i ncludeUnkn ownVisn");
				892		se archReques t.consentT ypeName = "";
				893		if (!NullChe cker.isNul lOrEmpty(a ttributes. get("conse ntTypeName "))) {
				894		searchRe quest.cons entTypeNam e = (Strin g) attribu tes.get("c onsentType Name");
				895		}
				896		se archReques t.userId = (String) attributes .get("user Id");
				897
				898		fi nal String inboundSo rtValue = (String) a ttributes. get("sortV alue");
				899		fi nal String inboundSo rtDirectio n = (Strin g) attribu tes.get("s ortDirecti on");
				900
				901		fi nal int pa tientTypes = (Intege r) attribu tes.get("p atientType s");
				902
				903		se archReques t.patientT ypes = pat ientTypes;
				904
				905		// For use i n sorting results
				906		if (NullChec ker.isNotE mpty(inbou ndSortValu e)) {
				907		searchRe quest.sort By = inbou ndSortValu e;
				908		}
				909		if (NullChec ker.isNotE mpty(inbou ndSortDire ction)) {
				910		searchRe quest.sort Order = in boundSortD irection;
				911		}
				912
				913		se archReques t.fromPage = 0;
				914		se archReques t.recordsP erPage = - 1;
				915
				916		fi nal List<M ap<String, Object>> results = new ArrayL ist<>();
				917		tr y {
				918
				919		final Pa tientConse ntDirDAO.S earchRespo nse search Response = patientCo nsentDirDA O.find(sea rchRequest );
				920
				921		if (sear chResponse != null) {
				922
				923		if ( (searchRes ponse.cons ents != nu ll)
				924		&& (search Response.c onsents.si ze() > 0)) {
				925
				926		for (Detai ledConsent Directive detailedCo nsentRefer ence : sea rchRespons e.consents ) {
				927		final Map<String , Object> resultMap = new Hash Map<>();
				928		if (de tailedCons entReferen ce != null ) {
				929		Re portDataPr ocessor.ad dSsnToResu ltMap(resu ltMap, det ailedConse ntReferenc e.getSsn() );
				930		re sultMap.pu t("lastNam e", detail edConsentR eference.g etLastName ());
				931		re sultMap.pu t("firstNa me", detai ledConsent Reference. getFirstNa me());
				932		re sultMap.pu t("middleN ame", deta iledConsen tReference .getMiddle Name());
				933		St ring conse ntTypeName = detaile dConsentRe ference.ge tOptinCons entType(). getName();
				934		if (consentT ypeName.co ntains("Nw HIN")) {
				935		consentT ypeName = consentTyp eName.repl ace("NwHIN ", Constan ts.getOrga nizationNa me());
				936		}
				937		re sultMap.pu t("consent TypeName", consentTy peName);
				938
				939		Si mpleDateFo rmat dt = new Simple DateFormat ("MM/dd/yy yy");
				940		re sultMap.pu t("optInDa te", dt.fo rmat(detai ledConsent Reference. getOptinDa te()));
				941		re sultMap.pu t("expirat ionDate", dt.format( detailedCo nsentRefer ence.getEx pirationDa te()));
				942
				943		re sultMap.pu t("facilit yName", de tailedCons entReferen ce.getFaci lityName() );
				944		re sultMap.pu t("userId" , detailed ConsentRef erence.get UserId());
				945		re sults.add( resultMap) ;
				946		}
				947		}
				948		}
				949		}
				950		} catch (fin al Excepti on ex) {
				951		throw ne w RuntimeE xception(e x);
				952		}
				953
				954		re turn resul ts;
				955		}
				956
				957		public List<Map< String, Ob ject>> get DelayedCon sentResult s() {
				958		De layedConse ntReportDA O.SearchAl lRequest s earchReque st = delay edConsentR eportDAO.n ew SearchA llRequest( );
				959
				960		// Get param eters for the search from the request.
				961		se archReques t.patientS sn = (Stri ng) attrib utes.get(" ssn");
				962		se archReques t.patientL astName = (String) a ttributes. get("lastN ame");
				963		se archReques t.patientF irstName = (String) attributes .get("firs tName");
				964		se archReques t.stationN umbers = ( String) at tributes.g et("statio nNumbers") ;
				965		se archReques t.aggregat eAtFacilit yLevel = f alse;
				966		se archReques t.includeU nknownVisn = (Boolea n) attribu tes.get("i ncludeUnkn ownVisn");
				967		se archReques t.reasonsF orDelay = (String) a ttributes. get("reaso nsForDelay ");
				968		se archReques t.daysSinc eDelayed = (String) attributes .get("days SinceDelay ed");
				969		se archReques t.consentT ype = (Str ing) attri butes.get( "consentTy pe");
				970		se archReques t.start = 0;
				971		se archReques t.length = -1;
				972		se archReques t.sortBy = (String) attributes .get("sort Value");
				973		se archReques t.sortOrde r = (Strin g) attribu tes.get("s ortDirecti on");
				974		se archReques t.patientT ypes = (In teger) att ributes.ge t("patient Types");
				975		se archReques t.enteredB y = (Strin g) attribu tes.get("u serId");
				976
				977		// Perform t he search.
				978		De layedConse ntReportDA O.SearchAl lResponse searchResp onse = del ayedConsen tReportDAO .searchAll (searchReq uest);
				979
				980		// Generate report dat a.
				981		fi nal List<M ap<String, Object>> results = new ArrayL ist<>();
				982		fo r (Delayed ConsentRpt r : searc hResponse. delayedCon sents) {
				983		final Ma p<String, Object> re sultMap = new HashMa p<>();
				984
				985		resultMa p.put("dat eAdded", r eportHelpe r.getForma ttedDateTi me(r.getDa teAdded()) );
				986		resultMa p.put("icn ", r.getPa tientIen() );
				987		resultMa p.put("ssn ", r.getPa tientSsn() );
				988		resultMa p.put("las tName", r. getPatient LastName() );
				989		resultMa p.put("fir stName", r .getPatien tFirstName ());
				990		resultMa p.put("mid dleName", r.getPatie ntMiddleNa me());
				991		resultMa p.put("con sentType", this.hand leConsentT ype(r));
				992		resultMa p.put("rea sonsForDel ay", this. handleDela yReasons(r .getDelayR easonColle ction(), ( String) at tributes.g et("reason sForDelay" )));
				993		resultMa p.put("ent eredBy", r .getUserId ());
				994		resultMa p.put("aut henticatin gFacility" , r.getFac ilityName( ));
				995		resultMa p.put("mai lNotificat ions", thi s.handleMa ilNotifica tions(this .getMailNo tification sByDelayed Consent(r. getDelayed ConsentId( )),"\r\n") );
				996
				997		results. add(result Map);
				998		}
				999
				1000		re turn resul ts;
				1001		}
				1002
				1003		privat e String h andleConse ntType(Del ayedConsen tRpt delay edConsent) {
				1004		St ring conse ntType = " ";
				1005		if (!NullChe cker.isNul lOrEmpty(d elayedCons ent.getCon sentTypeId ())) {
				1006		consentT ype = dela yedConsent .getConsen tTypeId(). getName();
				1007		consentT ype = Repo rtHelper.n ormalizeCo nsnentType Name(conse ntType);
				1008		}
				1009		re turn conse ntType;
				1010		}
				1011
				1012		privat e String h andleDelay Reasons(Co llection<D elayReason > delayedR easons, St ring searc hedForReas ons) {
				1013		if (!NullChe cker.isNul lOrEmpty(d elayedReas ons)) {
				1014		StringBu ilder sb = new Strin gBuilder() ;
				1015
				1016		if (Null Checker.is NullOrEmpt y(searched ForReasons ) \|\| "ALL" .equals(se archedForR easons)) {
				1017		//ge t em all
				1018		for (DelayReas on dr : de layedReaso ns) {
				1019		sb.append( dr.getName ());
				1020		sb.append( ", ");
				1021		}
				1022		} else {
				1023		//co ncatenate applicable reasons o nly
				1024		List <String> r easons = A rrays.asLi st(searche dForReason s.split("\ \s,\\s") );
				1025
				1026		for (DelayReas on dr : de layedReaso ns) {
				1027		if (reason s.contains (dr.getDel ayReasonId ().toStrin g())) {
				1028		sb.app end(dr.get Name());
				1029		sb.app end(", ");
				1030		}
				1031		}
				1032		}
				1033
				1034		return s b.length() > 0 ? sb. substring( 0, sb.leng th() - 2) : ""; //ge t rid of t he last co mma and sp ace (yeah its clunky and I don 't particu larly like it)
				1035		} else {
				1036		return " ";
				1037		}
				1038		}
				1039
				1040		privat e String h andleMailN otificatio ns(Collect ion<MailNo tification > notifica tions, Str ing delimi ter) {
				1041		St ringBuilde r result = new Strin gBuilder() ;
				1042		bo olean isFi rstItem = true;
				1043
				1044		fo r (MailNot ification mn : notif ications) {
				1045		result.a ppend(isFi rstItem ? "" : delim iter);
				1046		result.a ppend(repo rtHelper.g etFormatte dDate(mn.g etSentDate ()));
				1047		isFirstI tem = fals e;
				1048		}
				1049
				1050		re turn resul t.toString ();
				1051		}
				1052
				1053		privat e Collecti on<MailNot ification> getMailNo tification sByDelayed Consent(Lo ng delayed ConsentId) {
				1054		Co llection<M ailNotific ation> not ifications = this.ma ilNotifica tionDAO.fi ndByDelaye dConsentId (delayedCo nsentId.to String());
				1055
				1056		re turn notif ications;
				1057		}
				1058
				1059		/**
				1060		* Pro cesses Det ails prope rty as fol lows:
				1061		* - M asks SSN
				1062		* - R eplaces "M OTHERSMAID ENNAME" wi th "MMN"
				1063		* @pa ram detail s Details property o f AuditTyp e
				1064		* @re turn Proce ssed Detai ls propert y string
				1065		*/
				1066		privat e String p rocessDeta ils(String details) {
				1067		// Mask SSN
				1068		in t pos1 = d etails.ind exOf("SSN= ");
				1069		in t pos2;
				1070		St ring ssn;
				1071		if (pos1 != -1) {
				1072		pos2 = d etails.ind exOf(",", pos1);
				1073		if (pos2 != -1) {
				1074		ssn = details. substring( pos1 + 4, pos2).trim ();
				1075		if ( ssn.length () > 0) {
				1076		details = details.su bstring(0, pos1 + 4) + ReportD ataProcess or.maskSsn (ssn) + de tails.subs tring(pos2 );
				1077		}
				1078		}
				1079		}
				1080		// Replace " MOTHERSMAI DENNAME" w ith "MMN"
				1081		if (details. contains(" MOTHERSMAI DENNAME=") ) {
				1082		details = details. replace("M OTHERSMAID ENNAME=", "MMN=");
				1083		}
				1084		re turn detai ls;
				1085		}
				1086
				1087		public void setT itle(Strin g title) {
				1088		th is.title = title;
				1089		}
				1090
				1091		public void setR eportMap(M ap<String, String> p atientDisc overyMap) {
				1092		th is.reportM ap = patie ntDiscover yMap;
				1093		}
				1094
				1095		public void setF ilterMap(M ap<String, List<Obje ct>> filte rMap) {
				1096		th is.filterM ap = filte rMap;
				1097		}
				1098
				1099		public void setE xcelExport er(ExcelEx porter exE xport) {
				1100		th is.exExpor t = exExpo rt;
				1101		}
				1102
				1103		public void setA dapterAudi tManager(A dapterAudi tManager a dapterAudi tManager) {
				1104		th is.adapter AuditManag er = adapt erAuditMan ager;
				1105		}
				1106
				1107		public void setR eportHelpe r(ReportHe lper repor tHelper) {
				1108		th is.reportH elper = re portHelper ;
				1109		}
				1110
				1111		public void setA ttributes( Map<String , Object> attributes ) {
				1112		th is.attribu tes = attr ibutes;
				1113		}
				1114
				1115		public void setH asOptional Rows(boole an hasOpti onalRows) {
				1116		th is.hasOpti onalRows = hasOption alRows;
				1117		}
				1118
				1119		public void setF acilityHel per(Facili tyHelper f acilityHel per) {
				1120		th is.facilit yHelper = facilityHe lper;
				1121		}
				1122
				1123		public void setC msHelper(C onsentMana gementHelp er cmsHelp er) {
				1124		th is.cmsHelp er = cmsHe lper;
				1125		}
				1126
				1127		public void setI sSummaryRe port(boole an isSumma ryReport) {
				1128		th is.isSumma ryReport = isSummary Report;
				1129		}
				1130
				1131		public void setO ptionalRow sMap(Map<S tring, Str ing> optio nalRowsMap ) {
				1132		th is.optiona lRowsMap = optionalR owsMap;
				1133		}
				1134
				1135		public void setU serId(Stri ng userId) {
				1136		th is.userId = userId;
				1137		}
				1138
				1139		public void setU serDocumen tDao(UserD ocumentDAO userDocDa o) {
				1140		th is.userDoc Dao = user DocDao;
				1141		}
				1142
				1143		public void setD irectAudit Manager(Di rectAuditM anager dir ectAuditMa nager) {
				1144		th is.directA uditManage r = direct AuditManag er;
				1145		}
				1146
				1147		public void setR eportSourc e(String r eportSourc e) {
				1148		th is.reportS ource = re portSource ;
				1149		}
				1150
				1151		public void setA uditedCons entDAO(Aud itedConsen tDAO audit edConsentD AO) {
				1152		th is.audited ConsentDAO = audited ConsentDAO ;
				1153		}
				1154
				1155		public void setD ocumentHel per(Docume ntHelper d ocumentHel per) {
				1156		th is.documen tHelper = documentHe lper;
				1157		}
				1158
				1159		public void setP atientCons entDirDAO( PatientCon sentDirDAO patientCo nsentDirDA O) {
				1160		th is.patient ConsentDir DAO = pati entConsent DirDAO;
				1161		}
				1162
				1163		public void setD elayedCons entReportD AO(Delayed ConsentRep ortDAO del ayedConsen tReportDAO ) {
				1164		th is.delayed ConsentRep ortDAO = d elayedCons entReportD AO;
				1165		}
				1166
				1167		public void setM ailNotific ationDAO(M ailNotific ationDAO m ailNotific ationDAO) {
				1168		th is.mailNot ificationD AO = mailN otificatio nDAO;
				1169		}
				1170
				1171		public void setD ocumentTyp e(String d ocumentTyp e) {
				1172		th is.documen tType = do cumentType ;
				1173		}
				1174
				1175		public void setC svExport(C svExporter csvExport ) {
				1176		th is.csvExpo rt = csvEx port;
				1177		}
				1178		}