292. EPMO Open Source Coordination Office Redaction File Detail Report

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292.1 Files compared

#	Location	File	Last Modified
1	C:\working_scrub\Unredacted\eHX Code Base\eHX_Bld2_Source Code_CIF_2017-02-14\NHIN_adapter\SpecProcessor\src\main\java\gov\va\ccd\service\util	Utils.java	Fri Feb 10 15:41:44 2017 UTC
2	eHX-CIF.zip\eHX-CIF\eHX Code Base\eHX_Bld2_Source Code_CIF_2017-02-14\NHIN_adapter\SpecProcessor\src\main\java\gov\va\ccd\service\util	Utils.java	Mon Apr 3 14:39:13 2017 UTC

292.2 Comparison summary

Description	Between Files 1 and 2
Description	Text Blocks	Lines
Unchanged	2	2322
Changed	1	2
Inserted	0	0
Removed	0	0

292.3 Comparison options

Whitespace
Character case	Differences in character case are significant
Line endings	Differences in line endings (`CR` and `LF` characters) are ignored
CR/LF characters	Not shown in the comparison detail

292.4 Active regular expressions

No regular expressions were active.

292.5 Comparison detail

	1	package go v.va.ccd.s ervice.uti l;
	2
	3	import gov .va.ccd.co mponents.t ransform.T ransformer ;
	4	import gov .va.ccd.se rvice.valu e.object.U nitValue;
	5	import gov .va.ccd.se rvice.valu e.objects. impl.ItemO bject;
	6
	7	import jav a.io.IOExc eption;
	8	import jav a.math.Big Decimal;
	9	import jav a.util.Arr ayList;
	10	import jav a.util.Col lections;
	11	import jav a.util.Has hMap;
	12	import jav a.util.Lis t;
	13	import jav a.util.Loc ale;
	14	import jav a.util.Map ;
	15	import jav a.util.Sta ck;
	16
	17	import org .apache.co mmons.coll ections.Co llectionUt ils;
	18	import org .apache.co mmons.lang 3.StringEs capeUtils;
	19	import org .apache.co mmons.lang 3.StringUt ils;
	20	import org .eclipse.e mf.common. util.EList ;
	21	import org .eclipse.e mf.ecore.E Reference;
	22	import org .eclipse.e mf.ecore.r esource.Re source;
	23	import org .eclipse.e mf.ecore.r esource.UR IConverter ;
	24	import org .eclipse.e mf.ecore.u til.Featur eMap;
	25	import org .eclipse.e mf.ecore.u til.Featur eMap.Entry ;
	26	import org .eclipse.e mf.ecore.x mi.XMLReso urce;
	27	import org .eclipse.e mf.ecore.x mi.impl.Ge nericXMLRe sourceFact oryImpl;
	28	import org .eclipse.e mf.ecore.x ml.type.An yType;
	29	import org .eclipse.e mf.ecore.x ml.type.XM LTypeDocum entRoot;
	30	import org .joda.time .DateTime;
	31	import org .joda.time .format.Da teTimeForm at;
	32	import org .joda.time .format.Da teTimeForm atter;
	33	import org .openhealt htools.mdh t.uml.cda. Act;
	34	import org .openhealt htools.mdh t.uml.cda. AssignedAu thor;
	35	import org .openhealt htools.mdh t.uml.cda. AssignedEn tity;
	36	import org .openhealt htools.mdh t.uml.cda. Author;
	37	import org .openhealt htools.mdh t.uml.cda. CDAFactory ;
	38	import org .openhealt htools.mdh t.uml.cda. Entity;
	39	import org .openhealt htools.mdh t.uml.cda. EntryRelat ionship;
	40	import org .openhealt htools.mdh t.uml.cda. Informant1 2;
	41	import org .openhealt htools.mdh t.uml.cda. Observatio n;
	42	import org .openhealt htools.mdh t.uml.cda. Organizati on;
	43	import org .openhealt htools.mdh t.uml.cda. Organizer;
	44	import org .openhealt htools.mdh t.uml.cda. Participan t2;
	45	import org .openhealt htools.mdh t.uml.cda. Participan tRole;
	46	import org .openhealt htools.mdh t.uml.cda. Performer2 ;
	47	import org .openhealt htools.mdh t.uml.cda. PlayingEnt ity;
	48	import org .openhealt htools.mdh t.uml.cda. Procedure;
	49	import org .openhealt htools.mdh t.uml.cda. StrucDocTe xt;
	50	import org .openhealt htools.mdh t.uml.cda. SubstanceA dministrat ion;
	51	import org .openhealt htools.mdh t.uml.cda. ccd.Contin uityOfCare Document;
	52	import org .openhealt htools.mdh t.uml.hl7. datatypes. ANY;
	53	import org .openhealt htools.mdh t.uml.hl7. datatypes. CD;
	54	import org .openhealt htools.mdh t.uml.hl7. datatypes. ED;
	55	import org .openhealt htools.mdh t.uml.hl7. datatypes. II;
	56	import org .openhealt htools.mdh t.uml.hl7. datatypes. IVL_TS;
	57	import org .openhealt htools.mdh t.uml.hl7. datatypes. PQ;
	58	import org .openhealt htools.mdh t.uml.hl7. datatypes. TEL;
	59	import org .slf4j.Log ger;
	60	import org .slf4j.Log gerFactory ;
	61
	62	public cla ss Utils
	63	{
	64	pr ivate stat ic final L ogger logg er = Logge rFactory.g etLogger(U tils.class );
	65
	66	/* *
	67	* prepare n arrative t ext value
	68	*
	69	* @param na rrativeBlo ck
	70	* @return
	71	* /
	72	pu blic stati c StrucDoc Text setVa lueToNarra tiveBlock( String nar rativeBloc k) throws IOExceptio n {
	73	Stru cDocText t ext = null ;
	74	URIC onverter.R eadableInp utStream i s = null;
	75	try
	76	{
	77
	78	Resour ce.Factory factory = new Gener icXMLResou rceFactory Impl();
	79	XMLRes ource reso urce = (XM LResource) factory.c reateResou rce(null);
	80	is = n ew URIConv erter.Read ableInputS tream(narr ativeBlock );
	81	resour ce.load(is , null);
	82	XMLTyp eDocumentR oot root = (XMLTypeD ocumentRoo t) resourc e.getConte nts().get( 0);
	83	AnyTyp e value = (AnyType) root.getMi xed().getV alue(0);
	84	text = CDAFactor y.eINSTANC E.createSt rucDocText ();
	85	text.g etMixed(). addAll(val ue.getMixe d());
	86
	87	}
	88	catc h(Exceptio n e)
	89	{
	90	e.prin tStackTrac e();
	91	}
	92	fina lly
	93	{
	94	if(is != null)
	95	{
	96	is.close ();
	97	}
	98	}
	99
	100	retu rn text;
	101
	102	}
	103
	104	/* *
	105	* Special p arser for Vitals but may be ne eded elsew here. If a value has
	106	* more than one row, it will re turn a tab le instead of the Va lue Unit.
	107	*
	108	* @param va lues
	109	* @return
	110	* /
	111	pu blic stati c String v alueOrDefa ult(final List<UnitV alue> valu es)
	112	{
	113	if(C ollectionU tils.isNot Empty(valu es))
	114	{
	115	if(val ues.size() > 1)
	116	{
	117	StringBu ilder ret = new Stri ngBuilder( );
	118	// ret.a ppend("<ta ble>");
	119	for(Unit Value uv : values)
	120	{
	121	// ret.app end("<tr>< td>");
	122	if(ret.len gth() > 1)
	123	{
	124	re t.append(" //");
	125	}
	126	ret.append (uv.getVal ue());
	127
	128	if(StringU tils.isNot Blank(uv.g etUnit()))
	129	{
	130	re t.append(" ").appen d(uv.getUn it());
	131	}
	132
	133	if(StringU tils.isNot Blank(uv.g etTime()))
	134	{
	135	Da teTime dt = EffTimeU tils.conve rtDate(uv. getTime()) ;
	136	St ring forma t = "h:mm a";
	137	Da teTimeForm atter dtf = DateTime Format.for Pattern(fo rmat).with Locale(Loc ale.US);
	138	St ring time = dtf.prin t(dt);
	139	if (StringUti ls.isNotBl ank(time))
	140	{
	141	ret. append(" (").append (time).app end(")");
	142	}
	143	}
	144
	145	// ret.app end("</td> </tr>");
	146	}
	147	// ret.a ppend("</t able>");
	148	if(ret.l ength() > 1)
	149	{
	150	return ret .toString( );
	151	}
	152	}
	153	else
	154	{
	155	UnitValu e uv = val ues.get(0) ;
	156	return u v.getValue () + " " + uv.getUni t();
	157	}
	158	}
	159	retu rn "--";
	160	}
	161
	162	pu blic stati c String v alueOrDefa ult(final String val ue)
	163	{
	164	if(S tringUtils .isNotBlan k(value))
	165	{
	166	return value;
	167	}
	168
	169	retu rn "--";
	170	}
	171
	172	pu blic stati c String g etNonNullV alue(Strin g dn, Stri ng rn, Str ing ot)
	173	{
	174	if(S tringUtils .isNotBlan k(dn))
	175	{
	176	return dn;
	177	}
	178	else if(String Utils.isNo tBlank(rn) )
	179	{
	180	return rn;
	181	}
	182	else if(String Utils.isNo tBlank(ot) )
	183	{
	184	return ot;
	185	}
	186	retu rn "--";
	187	}
	188
	189	/* *
	190	* Return no n Null Val ue.
	191	*
	192	* @param dn
	193	* @param rn
	194	* @return
	195	* /
	196	pu blic stati c String g etNonNullV alue(Strin g dn, Stri ng rn)
	197	{
	198	if(S tringUtils .isNotBlan k(dn) && ! "null".equ alsIgnoreC ase(dn))
	199	{
	200	return dn;
	201	}
	202	else
	203	{
	204	if(Str ingUtils.i sNotBlank( rn))
	205	{
	206	return r n;
	207	}
	208	else
	209	{
	210	return " --";
	211	}
	212	}
	213	}
	214
	215	pu blic stati c boolean containsTe mplateId(L ist<II> te mplates, f inal Strin g id)
	216	{
	217	if(C ollectionU tils.isNot Empty(temp lates) && StringUtil s.isNotBla nk(id))
	218	{
	219	for(II ii : temp lates)
	220	{
	221	if(id.eq ualsIgnore Case(ii.ge tRoot()))
	222	{
	223	return tru e;
	224	}
	225	}
	226	}
	227	retu rn false;
	228	}
	229
	230	/* *
	231	* return th e value of the first available effective time. Fir st value,
	232	* Second lo w, Third H igh
	233	*
	234	* @param ti me
	235	* @return
	236	* /
	237	pu blic stati c String g etEffectiv eTime(fina l IVL_TS t ime)
	238	{
	239	if(t ime != nul l)
	240	{
	241	if(Str ingUtils.i sNotBlank( time.getVa lue()))
	242	{
	243	return t ime.getVal ue();
	244	}
	245
	246	if(tim e.getLow() != null)
	247	{
	248	if(Strin gUtils.isN otBlank(ti me.getLow( ).getValue ()))
	249	{
	250	return tim e.getLow() .getValue( );
	251	}
	252	}
	253
	254	if(tim e.getHigh( ) != null)
	255	{
	256	if(Strin gUtils.isN otBlank(ti me.getHigh ().getValu e()))
	257	{
	258	return tim e.getHigh( ).getValue ();
	259	}
	260	}
	261	}
	262	retu rn StringU tils.EMPTY ;
	263	}
	264
	265	/* *
	266	* For BR ru le purpose s return c ode in the following manner: 1 ) displayN ame
	267	* 2) Transl ation disp layName 3) Original Text 4) Co de
	268	*
	269	* @param co de
	270	* @return
	271	* /
	272	pu blic stati c ItemObje ct getFrom Code(final CD code, final Stru cDocText n arrative)
	273	{
	274	if(c ode == nul l)
	275	{
	276	return new ItemO bject();
	277	}
	278
	279	// F irst get d isplayname
	280	if(S tringUtils .isNotBlan k(code.get DisplayNam e()))
	281	{
	282	return new ItemO bject(code .getDispla yName());
	283	}
	284
	285	Item Object ret = null;
	286	// S econd, get translati on display Name.
	287
	288	ret = getFromT ranslation s(code.get Translatio ns(), narr ative);
	289	if(r et != null )
	290	{
	291	return ret;
	292	}
	293	// T hird, see if there i s Original Text to p rocess.
	294	ret = getFromO riginalTex t(code.get OriginalTe xt(), narr ative);
	295
	296	if(r et != null )
	297	{
	298	return ret;
	299	}
	300
	301	if(S tringUtils .isNotBlan k(code.get Code()))
	302	{
	303	return new ItemO bject(code .getCode() );
	304	}
	305	retu rn new Ite mObject();
	306	}
	307
	308	pu blic stati c ItemObje ct getFrom Translatio ns(final L ist<CD> tr ans, final StrucDocT ext narrat ive)
	309	{
	310	if(C ollectionU tils.isEmp ty(trans))
	311	{
	312	return null;
	313	}
	314
	315	Stri ngBuilder sb = new S tringBuild er();
	316
	317	for( CD tran : trans)
	318	{
	319	if(Str ingUtils.i sNotBlank( tran.getDi splayName( )))
	320	{
	321	sb.appen d(tran.get DisplayNam e()).appen d(",");
	322	}
	323	}
	324
	325	if(s b.length() > 0)
	326	{
	327	return new ItemO bject(sb.s ubstring(0 , sb.lengt h() - 1));
	328	}
	329
	330	retu rn null;
	331	}
	332
	333	pu blic stati c ItemObje ct getFrom OriginalTe xt(final E D oText, f inal Struc DocText na rrative)
	334	{
	335	if(o Text == nu ll)
	336	return null;
	337
	338	Stri ng text = oText.getT ext();
	339
	340	if(S tringUtils .isNotBlan k(text))
	341	return new ItemO bject(text );
	342
	343	TEL ref = oTex t.getRefer ence();
	344	if(r ef != null )
	345	{
	346	String val = get ReferenceV alue(narra tive, ref. getValue() );
	347	if(val != null)
	348	{
	349	return n ew ItemObj ect(val, r ef.getValu e());
	350	}
	351	}
	352	retu rn null;
	353	}
	354
	355	/* *
	356	* Looks for a compone nt where I D="{id}" r eturns a m ap contain ing the
	357	* element n ame a list of Attrib utes store d in ItemO bjects and the value .
	358	*
	359	* @param na rrative
	360	* @param id
	361	* @return
	362	* /
	363	pu blic stati c Map<Stri ng, Object > getTagMa pFromId(fi nal StrucD ocText nar rative, fi nal String id)
	364	{
	365	if(S tringUtils .isNotBlan k(id))
	366	{
	367	String tid = id. startsWith ("#") ? id .substring (1) : id;
	368	if(nar rative != null)
	369	{
	370	FeatureM ap mixed = narrative .getMixed( );
	371	Map<Stri ng, Object > map = tr averseForT ag(mixed, tid);
	372	if(!map. isEmpty())
	373	{
	374	return map ;
	375	}
	376	}
	377	}
	378	retu rn Collect ions.empty Map();
	379	}
	380
	381	// To extrac t the refe rence valu e from the narrative block
	382	pu blic stati c String g etReferenc eValue(Str ucDocText narrativeT ext, Strin g id)
	383	{
	384	if(S tringUtils .isNotBlan k(id) && n arrativeTe xt != null )
	385	{
	386	String tid = id. startsWith ("#") ? id .substring (1) : id;
	387	return getAllRef ernceValue (narrative Text.getMi xed(), tid );
	388	}
	389	retu rn StringU tils.EMPTY ;
	390	}
	391
	392	pu blic stati c void wal kFeatureMa p(FeatureM ap map, St ring id)
	393	{
	394	if(m ap != null && String Utils.isNo tBlank(id) )
	395	{
	396	for(En try entry : map)
	397	{
	398	logger.d ebug(entry .getValue( ).toString ());
	399	if(entry .getEStruc turalFeatu re() != nu ll)
	400	{
	401	logger.deb ug(entry.g etEStructu ralFeature ().getName () + ": " + entry.ge tValue());
	402	if(entry i nstanceof AnyType)
	403	{
	404	An yType any = (AnyType ) entry;
	405	wa lkFeatureM ap(any.get Any(), id) ;
	406	wa lkFeatureM ap(any.get Mixed(), i d);
	407	}
	408	else
	409	{
	410	lo gger.debug ("Not AnyT ype: " + e ntry.getCl ass().toSt ring());
	411	}
	412	}
	413	}
	414	}
	415	}
	416
	417	pu blic stati c String l istToStrin g(List<Str ing> list)
	418	{
	419	Stri ngBuffer s b = new St ringBuffer ();
	420	try
	421	{
	422
	423	if(Col lectionUti ls.isNotEm pty(list))
	424	{
	425	int i = 1;
	426
	427	for(Stri ng s : lis t)
	428	{
	429	if(StringU tils.isNot Blank(s))
	430	{
	431	if (i < list. size())
	432	sb.a ppend(s + ", ");
	433	el se
	434	sb.a ppend(s);
	435	}
	436	i = i + 1;
	437	}
	438
	439	return s b.toString ();
	440	}
	441	}
	442	catc h(Exceptio n e)
	443	{
	444	return "";
	445	}
	446	retu rn sb.toSt ring();
	447	}
	448
	449	pu blic stati c String g etSource(C ontinuityO fCareDocum ent ccdDoc ument)
	450	{
	451	Stri ng source = null;
	452	if(c cdDocument != null)
	453	{
	454	if(ccd Document.g etAuthors( ) != null && ccdDocu ment.getAu thors().si ze() > 0)
	455	{
	456
	457	if(ccdDo cument.get Authors(). get(0).get AssignedAu thor() != null)
	458	{
	459	if(ccdDocu ment.getAu thors().ge t(0).getAs signedAuth or().getRe presentedO rganizatio n() != nul l)
	460	{
	461	so urce = ccd Document.g etAuthors( ).get(0).g etAssigned Author().g etRepresen tedOrganiz ation().ge tNames().g et(0).getT ext();
	462	re turn sourc e;
	463	}
	464	}
	465	}
	466
	467	}
	468	retu rn null;
	469
	470	}
	471
	472	pu blic stati c String r emoveLastC har(String str)
	473	{
	474	retu rn str.sub string(0, str.length () - 2);
	475	}
	476
	477	pu blic stati c String g etCommaSep erateStrin g(List<Str ing> list)
	478	{
	479	Stri ngBuffer s b = new St ringBuffer ();
	480	if(C ollectionU tils.isNot Empty(list ))
	481	{
	482	for(St ring value : list)
	483	{
	484	if(Strin gUtils.isN otBlank(va lue))
	485	{
	486	if(sb.leng th() > 0)
	487	{
	488	sb .append(", ");
	489	}
	490	sb.append( value);
	491	}
	492	}
	493	return sb.toStri ng();
	494	}
	495	retu rn "--";
	496	}
	497
	498	pu blic stati c String g etNotNullV alue(Strin g value1, String val ue2)
	499	{
	500
	501	if(S tringUtils .isNotBlan k(value1))
	502	{
	503	return value1.tr im();
	504	}
	505	else if(String Utils.isNo tBlank(val ue2))
	506	{
	507	return value2.tr im();
	508	}
	509	else
	510	{
	511	return "--";
	512	}
	513	}
	514
	515	pu blic stati c String g etNotNullV alue(Strin g value1, String val ue2, Strin g value3)
	516	{
	517
	518	if(S tringUtils .isNotBlan k(value1))
	519	{
	520	return value1;
	521	}
	522	else if(String Utils.isNo tBlank(val ue2))
	523	{
	524
	525	return value2;
	526	}
	527	else if(String Utils.isNo tBlank(val ue3))
	528	{
	529
	530	return value3;
	531	}
	532	else
	533	{
	534	return "--";
	535	}
	536	}
	537
	538	pu blic stati c String g etRefList( Map<String , String> mp)
	539	{
	540	Stri ngBuffer s b = new St ringBuffer ();
	541	sb.a ppend("<li st>");
	542
	543	for( Map.Entry< String, St ring> pair s : mp.ent rySet())
	544	{
	545	sb.app end("<item >");
	546	sb.app end("<cont ent ID=\"" + pairs.g etKey() + "\">" + pa irs.getVal ue() + "</ content>") ;
	547	sb.app end("</ite m>");
	548	}
	549
	550	sb.a ppend("</l ist>");
	551
	552	retu rn sb.toSt ring();
	553
	554	}
	555
	556	pu blic stati c String g etCommaSep erateStrin g(Map<Stri ng, String > map)
	557	{
	558	Stri ngBuffer s b = new St ringBuffer ();
	559	for( Map.Entry< String, St ring> pair s : map.en trySet())
	560	{
	561	sb.app end(pairs. getValue() + ", ");
	562	}
	563	if(s b.length() > 0)
	564	{
	565	return removeLas tChar(sb.t oString()) ;
	566	}
	567	retu rn "--";
	568	}
	569
	570	pr ivate stat ic Map<Str ing, Objec t> travers eForTag(fi nal Featur eMap root, final Str ing id)
	571	{
	572	Stac k<FeatureM ap> stack = new Stac k<FeatureM ap>();
	573	Map< String, Ob ject> ret = new Hash Map<String , Object>( );
	574	stac k.push(roo t);
	575	whil e(!stack.i sEmpty())
	576	{
	577	Featur eMap featu reMap = st ack.pop();
	578	for(En try entry : featureM ap)
	579	{
	580	if(entry .getEStruc turalFeatu re() insta nceof ERef erence)
	581	{
	582	AnyType an yType = (A nyType) en try.getVal ue();
	583	if(travers eForID(any Type.getAn yAttribute (), id))
	584	{
	585	re t.put("nam e", entry. getEStruct uralFeatur e().getNam e());
	586	Li st<ItemObj ect> attrs = travers eMyAttribu tes(anyTyp e.getAnyAt tribute()) ;
	587	if (Collectio nUtils.isN otEmpty(at trs))
	588	{
	589	ret. put("attri butes", at trs);
	590	}
	591	St ringBuilde r sb = new StringBui lder();
	592	fo r(Entry fo undEntry : anyType.g etMixed())
	593	{
	594	sb.a ppend(rebu ildEntry(f oundEntry) ); // getV aluesFromM ixed(anyTy pe.getMixe d());
	595	}
	596	if (StringUti ls.isNotBl ank(sb.toS tring()))
	597	{
	598	ret. put("value ", sb.toSt ring());
	599	}
	600	re turn ret;
	601	}
	602	else
	603	{
	604	st ack.push(a nyType.get Mixed());
	605	}
	606	}
	607	}
	608	}
	609	retu rn Collect ions.empty Map();
	610	}
	611
	612	pr ivate stat ic boolean traverseF orID(final FeatureMa p attribut es, final String id)
	613	{
	614	if(S tringUtils .isEmpty(i d))
	615	{
	616	return false;
	617	}
	618
	619	for( Entry entr y : attrib utes)
	620	{
	621	if("ID ".equals(e ntry.getES tructuralF eature().g etName()) && id.equa ls(entry.g etValue(). toString() ))
	622	{
	623	return t rue;
	624	}
	625	}
	626
	627	retu rn false;
	628	}
	629
	630	pr ivate stat ic List<It emObject> traverseMy Attributes (FeatureMa p anyAttri bute)
	631	{
	632	List <ItemObjec t> ret = n ew ArrayLi st<ItemObj ect>();
	633	for( Entry entr y : anyAtt ribute)
	634	{
	635	ret.ad d(new Item Object(ent ry.getValu e().toStri ng(), entr y.getEStru cturalFeat ure().getN ame()));
	636	}
	637	retu rn ret;
	638	}
	639
	640	/* *
	641	* Quick che ck to see if the val ue should be returne d or if th e default
	642	* should be returned.
	643	*
	644	* @param va lue
	645	* @param de faultValue
	646	* @return
	647	* /
	648	pu blic stati c String r eturnDefau ltOrBlank( final Stri ng value, final Stri ng default Value)
	649	{
	650	if(S tringUtils .isNotBlan k(value))
	651	{
	652	return value;
	653	}
	654
	655	retu rn returnD efaultOrBl ank(defaul tValue);
	656	}
	657
	658	/* *
	659	* if defaul t value ex ists retur n it, else return em pty string .
	660	*
	661	* @param de faultValue
	662	* @return
	663	* /
	664	pu blic stati c String r eturnDefau ltOrBlank( final Stri ng default Value)
	665	{
	666	if(S tringUtils .isNotBlan k(defaultV alue))
	667	{
	668	return defaultVa lue;
	669	}
	670	retu rn StringU tils.EMPTY ;
	671	}
	672
	673	/* *
	674	* For legac y code to check if t here is a reference. If there is a refer ence
	675	* return it in a cont ent tag. I f not retu rn the def ault value .
	676	*
	677	* @param re ference
	678	* @param va lue
	679	* @param de faultValue
	680	* @return
	681	* /
	682	pu blic stati c String c reateRefer enceWDefau lt(final S tring refe rence, fin al List<St ring> valu e, final S tring defa ultValue)
	683	{
	684
	685	if(S tringUtils .isBlank(r eference))
	686	{
	687	return returnDef aultOrBlan k(listToSt ring(value ), default Value);
	688	}
	689
	690	retu rn "<conte nt ID=\"" + referenc e + "\">" + returnDe faultOrBla nk(listToS tring(valu e), defaul tValue) + "</content >";
	691	}
	692
	693	/* *
	694	* For legac y code to check if t here is a reference. If there is a refer ence
	695	* return it in a cont ent tag. I f not retu rn the def ault value .
	696	*
	697	* @param re ference
	698	* @param va lue
	699	* @param de faultValue
	700	* @return
	701	* /
	702	pu blic stati c String c reateRefer enceWDefau lt(final S tring refe rence, fin al String value, fin al String defaultVal ue)
	703	{
	704
	705	if(S tringUtils .isBlank(r eference))
	706	{
	707	return returnDef aultOrBlan k(value, d efaultValu e);
	708	}
	709
	710	retu rn "<conte nt ID=\"" + referenc e + "\">" + returnDe faultOrBla nk(value, defaultVal ue) + "</c ontent>";
	711	}
	712
	713	pu blic stati c List<Str ing> getAl lRefernces FromNarr(f inal Featu reMap map)
	714	{
	715	List <String> r et = new A rrayList<S tring>();
	716
	717	for( Entry entr y : map)
	718	{
	719	if(ent ry.getEStr ucturalFea ture() ins tanceof ER eference)
	720	{
	721	AnyType anyType = (AnyType) entry.getV alue();
	722	if(hasId (anyType.g etAnyAttri bute()) && !"table". equalsIgno reCase(ent ry.getEStr ucturalFea ture().get Name()))
	723	{
	724	// Found a reference , now buil d it.
	725	String com ponent = r ebuildEntr y(entry);
	726	if(StringU tils.isNot Blank(comp onent))
	727	{
	728	re t.add(comp onent);
	729	}
	730	}
	731	else
	732	{
	733	ret.addAll (getAllRef erncesFrom Narr(anyTy pe.getMixe d()));
	734	}
	735	}
	736	}
	737
	738	retu rn ret;
	739	}
	740
	741	pu blic stati c String g etAllRefer nceValue(f inal Featu reMap map, final Str ing id)
	742	{
	743	Stri ngBuilder ret = new StringBuil der();
	744
	745	for( Entry entr y : map)
	746	{
	747	if(ent ry.getEStr ucturalFea ture() ins tanceof ER eference)
	748	{
	749	AnyType anyType = (AnyType) entry.getV alue();
	750	if(hasId (anyType.g etAnyAttri bute(), id ) && !"tab le".equals IgnoreCase (entry.get EStructura lFeature() .getName() ))
	751	{
	752	// Found a reference , now buil d it.
	753	String com ponent = r ebuildItem (anyType.g etMixed()) ;
	754	if(StringU tils.isNot Blank(comp onent))
	755	{
	756	re t.append(c omponent);
	757	}
	758	}
	759	else
	760	{
	761	ret.append (getAllRef ernceValue (anyType.g etMixed(), id));
	762	}
	763	}
	764	}
	765
	766	retu rn ret.toS tring();
	767	}
	768
	769	pu blic stati c boolean hasId(fina l FeatureM ap attribu tes, final String id )
	770	{
	771	if(S tringUtils .isEmpty(i d))
	772	{
	773	return false;
	774	}
	775
	776	for( Entry entr y : attrib utes)
	777	{
	778	if("ID ".equals(e ntry.getES tructuralF eature().g etName()) && id.equa lsIgnoreCa se(entry.g etValue(). toString() ))
	779	{
	780	return t rue;
	781	}
	782	}
	783
	784	retu rn false;
	785	}
	786
	787	pu blic stati c boolean hasId(fina l FeatureM ap attribu tes)
	788	{
	789	for( Entry entr y : attrib utes)
	790	{
	791	if("ID ".equals(e ntry.getES tructuralF eature().g etName()))
	792	{
	793	return t rue;
	794	}
	795	}
	796
	797	retu rn false;
	798	}
	799
	800	pr ivate stat ic String rebuildIte m(final Fe atureMap m ap)
	801	{
	802	fina l StringBu ilder sb = new Strin gBuilder() ;
	803
	804	for( Entry entr y : map)
	805	{
	806	sb.app end(rebuil dEntry(ent ry));
	807	}
	808	retu rn sb.toSt ring();
	809	}
	810
	811	pr ivate stat ic String rebuildEnt ry(final E ntry entry )
	812	{
	813	Stri ngBuilder sb = new S tringBuild er();
	814
	815	if(e ntry.getES tructuralF eature() i nstanceof EReference )
	816	{
	817	String tag = ent ry.getEStr ucturalFea ture().get Name();
	818	sb.app end("<").a ppend(tag) .append(" ");
	819	AnyTyp e any = (A nyType) en try.getVal ue();
	820	sb.app end(recrea teAttribut es(any.get AnyAttribu te()));
	821	sb.app end(">");
	822	if(any .getMixed( ) != null)
	823	{
	824	sb.appen d(rebuildI tem(any.ge tMixed())) ;
	825	}
	826	sb.app end("</"). append(tag ).append(" >");
	827	}
	828	else
	829	{
	830	if(ent ry.getValu e() != nul l)
	831	{
	832	String v alue = Str ingUtils.t rimToEmpty (entry.get Value().to String());
	833	if(Strin gUtils.isN otBlank(va lue))
	834	{
	835	sb.append( StringEsca peUtils.es capeXml(va lue));
	836	}
	837	}
	838	else
	839	{
	840	sb.appen d(">");
	841	}
	842	}
	843
	844	retu rn sb.toSt ring();
	845	}
	846
	847	pr ivate stat ic String recreateAt tributes(f inal Featu reMap anyA ttribute)
	848	{
	849	fina l StringBu ilder sb = new Strin gBuilder() ;
	850	for( Entry entr y : anyAtt ribute)
	851	{
	852	sb.app end(entry. getEStruct uralFeatur e().getNam e()).appen d("=");
	853	sb.app end("\""). append(ent ry.getValu e().toStri ng()).appe nd("\"").a ppend(" ") ;
	854	}
	855
	856	retu rn sb.toSt ring();
	857	}
	858
	859	/* *
	860	* Will conv ert the un it abbrevi ation to a n actual d isplay nam e.
	861	*
	862	* This only process t he 2.16.84 0.1.113883 .11.20.9.2 1 (AgePQ_U CUM)
	863	* 2012-06-0 2 value se t.
	864	*
	865	* @param va lue
	866	* @return
	867	* /
	868	pu blic stati c String c onvertPQUn it(final P Q value)
	869	{
	870	Stri ngBuilder ret = new StringBuil der();
	871
	872	if(v alue != nu ll)
	873	{
	874	if(Str ingUtils.i sNotBlank( value.getU nit()))
	875	{
	876	if("a".e qualsIgnor eCase(valu e.getUnit( )))
	877	{
	878	ret.append ("Year");
	879	}
	880	else if( "wk".equal sIgnoreCas e(value.ge tUnit()))
	881	{
	882	ret.append ("Week");
	883	}
	884	else if( "mo".equal sIgnoreCas e(value.ge tUnit()))
	885	{
	886	ret.append ("Month");
	887	}
	888	else if( "min".equa lsIgnoreCa se(value.g etUnit()))
	889	{
	890	ret.append ("Minute") ;
	891	}
	892	else if( "h".equals IgnoreCase (value.get Unit()))
	893	{
	894	ret.append ("Hour");
	895	}
	896	else if( "d".equals IgnoreCase (value.get Unit()))
	897	{
	898	ret.append ("Day");
	899	}
	900	}
	901	}
	902
	903	if(v alue.getVa lue() != n ull && val ue.getValu e().compar eTo(BigDec imal.ONE) > 0)
	904	{
	905	ret.ap pend("s");
	906	}
	907
	908	retu rn ret.toS tring();
	909	}
	910
	911	pu blic stati c PQ getAg e(final En tryRelatio nship rel)
	912	{
	913	if(r el != null )
	914	{
	915	Observ ation obs = rel.getO bservation ();
	916	if(obs != null && co ntainsTemp lateId(obs .getTempla teIds(), " 2.16.840.1 .113883. IP "))
	917	{
	918	// Retur n the firs t value.
	919	for(ANY any : obs. getValues( ))
	920	{
	921	if(any ins tanceof PQ )
	922	{
	923	re turn (PQ) any;
	924	}
	925	}
	926	}
	927	}
	928	retu rn null;
	929	}
	930
	931	pu blic stati c String g etSourceFr omAct(fina l Act act)
	932	{
	933	if(a ct != null )
	934	{
	935	return getSource (act.getAu thors(), a ct.getPerf ormers(), act.getPar ticipants( ), act.get Informants ());
	936	}
	937	retu rn StringU tils.EMPTY ;
	938	}
	939
	940	pu blic stati c String g etSourceFr omObservat ion(final Observatio n obs)
	941	{
	942	if(o bs != null )
	943	{
	944	return getSource (obs.getAu thors(), o bs.getPerf ormers(), obs.getPar ticipants( ), obs.get Informants ());
	945	}
	946	retu rn StringU tils.EMPTY ;
	947	}
	948
	949	pu blic stati c String g etSourceFr omOrganize r(final Or ganizer or g)
	950	{
	951	if(o rg != null )
	952	{
	953	return getSource (org.getAu thors(), o rg.getPerf ormers(), org.getPar ticipants( ), org.get Informants ());
	954	}
	955	retu rn StringU tils.EMPTY ;
	956	}
	957
	958	pu blic stati c String g etSourceFr omSubstanc eAdmin(fin al Substan ceAdminist ration sub stance)
	959	{
	960	if(s ubstance ! = null)
	961	{
	962	return getSource (substance .getAuthor s(), subst ance.getPe rformers() , substanc e.getParti cipants(), substance .getInform ants());
	963	}
	964	retu rn StringU tils.EMPTY ;
	965	}
	966
	967	pu blic stati c String g etSourceFr omProcedur es(final P rocedure p roc)
	968	{
	969	if(p roc != nul l)
	970	{
	971	return getSource (proc.getA uthors(), proc.getPe rformers() , proc.get Participan ts(), proc .getInform ants());
	972	}
	973	retu rn StringU tils.EMPTY ;
	974	}
	975
	976	pu blic stati c String g etSource(f inal EList <Author> a uthors)
	977	{
	978	retu rn getSour ce(authors , null);
	979	}
	980
	981	pu blic stati c String g etSource(f inal EList <Author> a uthors, fi nal EList< Performer2 > performe rs)
	982	{
	983	retu rn getSour ce(authors , performe rs, null);
	984	}
	985
	986	pu blic stati c String g etSource(f inal EList <Author> a uthors, fi nal EList< Performer2 > performe rs, final EList<Part icipant2> participan ts)
	987	{
	988	retu rn getSour ce(authors , performe rs, partic ipants, nu ll);
	989	}
	990
	991	pu blic stati c String g etSource(f inal EList <Author> a uthors, fi nal EList< Performer2 > performe rs, final EList<Part icipant2> participan ts, final EList<Info rmant12> i nformants)
	992	{
	993	Stri ng source = Utils.ge tSourceFro mAuthors(a uthors);
	994	if(S tringUtils .isBlank(s ource))
	995	{
	996	source = Utils.g etSourceFr omPerforme r(performe rs);
	997	if(Str ingUtils.i sBlank(sou rce))
	998	{
	999	source = Utils.get SourceFrom Scoping(pa rticipants );
	1000	if(Strin gUtils.isB lank(sourc e))
	1001	{
	1002	source = U tils.getSo urceFromPl ayingEntit y(particip ants);
	1003	if(StringU tils.isBla nk(source) )
	1004	{
	1005	so urce = Uti ls.getSour ceFromInfo rmants(inf ormants);
	1006	}
	1007	}
	1008	}
	1009	}
	1010	retu rn source;
	1011	}
	1012
	1013	pu blic stati c String g etSourceFr omAuthors( final ELis t<Author> authors)
	1014	{
	1015	if(C ollectionU tils.isNot Empty(auth ors))
	1016	{
	1017	String Builder sb = new Str ingBuilder ();
	1018	for(Au thor autho r : author s)
	1019	{
	1020	Assigned Author aAu thor = aut hor.getAss ignedAutho r();
	1021	if(aAuth or != null )
	1022	{
	1023	Organizati on org = a Author.get Represente dOrganizat ion();
	1024	if(org != null)
	1025	{
	1026	sb .append(Tr ansformer. createName sON(org.ge tNames())) ;
	1027	}
	1028	}
	1029	}
	1030	if(sb. length() > 0)
	1031	{
	1032	return s b.toString ();
	1033	}
	1034	}
	1035	retu rn StringU tils.EMPTY ;
	1036	}
	1037
	1038	pu blic stati c String g etSourceFr omInforman ts(final E List<Infor mant12> in formants)
	1039	{
	1040	if(C ollectionU tils.isNot Empty(info rmants))
	1041	{
	1042	String Builder sb = new Str ingBuilder ();
	1043	for(In formant12 informant : informan ts)
	1044	{
	1045	Assigned Entity ent ity = info rmant.getA ssignedEnt ity();
	1046	if(entit y != null)
	1047	{
	1048
	1049	EList<Orga nization> orgs = ent ity.getRep resentedOr ganization s();
	1050	if(Collect ionUtils.i sNotEmpty( orgs))
	1051	{
	1052	fo r(Organiza tion org : orgs)
	1053	{
	1054	if(s b.length() > 0)
	1055	{
	1056	sb.app end(", ");
	1057	}
	1058	sb.a ppend(Tran sformer.cr eateNamesO N(org.getN ames()));
	1059	}
	1060	}
	1061	}
	1062	}
	1063	if(sb. length() > 0)
	1064	{
	1065	return s b.toString ();
	1066	}
	1067	}
	1068	retu rn StringU tils.EMPTY ;
	1069	}
	1070
	1071	pu blic stati c String g etSourceFr omPerforme r(final EL ist<Perfor mer2> perf ormers)
	1072	{
	1073	if(C ollectionU tils.isNot Empty(perf ormers))
	1074	{
	1075	String Builder sb = new Str ingBuilder ();
	1076	for(Pe rformer2 p erformer : performer s)
	1077	{
	1078	Assigned Entity ass ignedEntit y = perfor mer.getAss ignedEntit y();
	1079	if(assig nedEntity != null)
	1080	{
	1081	if(Collect ionUtils.i sNotEmpty( assignedEn tity.getRe presentedO rganizatio ns()))
	1082	{
	1083	fo r(Organiza tion org : assignedE ntity.getR epresented Organizati ons())
	1084	{
	1085	if(o rg != null )
	1086	{
	1087	if(sb. length() > 0)
	1088	{
	1089	sb.appen d(", ");
	1090	}
	1091	sb.app end(Transf ormer.crea teNamesON( org.getNam es()));
	1092	}
	1093	}
	1094	}
	1095	}
	1096	}
	1097	if(sb. length() > 0)
	1098	{
	1099	return s b.toString ();
	1100	}
	1101	}
	1102	retu rn StringU tils.EMPTY ;
	1103	}
	1104
	1105	pu blic stati c String g etSourceFr omScoping( final ELis t<Particip ant2> part icipants)
	1106	{
	1107	if(C ollectionU tils.isNot Empty(part icipants))
	1108	{
	1109	String Builder sb = new Str ingBuilder ();
	1110	for(Pa rticipant2 part : pa rticipants )
	1111	{
	1112	Particip antRole ro le = part. getPartici pantRole() ;
	1113	if(role != null)
	1114	{
	1115	Entity sco pe = role. getScoping Entity();
	1116	if(scope ! = null && scope.getD esc() != n ull && Str ingUtils.i sNotBlank( scope.getD esc().getT ext()))
	1117	{
	1118	if (sb.length () > 1)
	1119	{
	1120	sb.a ppend(", " );
	1121	}
	1122	sb .append(sc ope.getDes c().getTex t());
	1123	}
	1124	}
	1125	}
	1126	if(sb. length() > 0)
	1127	{
	1128	return s b.toString ();
	1129	}
	1130	}
	1131	retu rn StringU tils.EMPTY ;
	1132	}
	1133
	1134	pu blic stati c String g etSourceFr omPlayingE ntity(fina l EList<Pa rticipant2 > particip ants)
	1135	{
	1136	if(C ollectionU tils.isNot Empty(part icipants))
	1137	{
	1138	String Builder sb = new Str ingBuilder ();
	1139	for(Pa rticipant2 part : pa rticipants )
	1140	{
	1141	Particip antRole ro le = part. getPartici pantRole() ;
	1142	if(role != null)
	1143	{
	1144	PlayingEnt ity entity = role.ge tPlayingEn tity();
	1145	if(entity != null && entity.ge tDesc() != null && S tringUtils .isNotBlan k(entity.g etDesc().g etText()))
	1146	{
	1147	if (sb.length () > 1)
	1148	{
	1149	sb.a ppend(", " );
	1150	}
	1151	sb .append(en tity.getDe sc().getTe xt());
	1152	}
	1153	}
	1154	}
	1155	if(sb. length() > 0)
	1156	{
	1157	return s b.toString ();
	1158	}
	1159	}
	1160	retu rn StringU tils.EMPTY ;
	1161	}
	1162	}