325. EPMO Open Source Coordination Office Redaction File Detail Report

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325.1 Files compared

#	Location	File	Last Modified
1	IV-eHMP_CIF.zip\IMAG_Source\VISA\Java\MIXDataSource\main\src\java\gov\va\med\imaging\mixdatasource	MixStudyGraphDataSourceService.java	Mon Dec 4 21:34:38 2017 UTC
2	IV-eHMP_CIF.zip\IMAG_Source\VISA\Java\MIXDataSource\main\src\java\gov\va\med\imaging\mixdatasource	MixStudyGraphDataSourceService.java	Mon Dec 4 22:04:14 2017 UTC

325.2 Comparison summary

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325.3 Comparison options

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325.4 Active regular expressions

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325.5 Comparison detail

	1	/**
	2	*
	3	Package: MAG - Vis tA Imaging
	4	WARNING: Per VHA D irective 2 004-038, t his routin e should n ot be modi fied.
	5	Date Cre ated: Jan 8, 2008
	6	Site Nam e: Washin gton OI Fi eld Office , Silver S pring, MD
	7	Developer: WERFEJ
	8	Descript ion:
	9
	10	;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- +
	11	;; Property of the US Government .
	12	;; No permis sion to co py or redi stribute t his softwa re is give n.
	13	;; Use of un released v ersions of this soft ware requi res the us er
	14	;; to execu te a writt en test ag reement wi th the Vis tA Imaging
	15	;; Developm ent Office of the De partment o f Veterans Affairs,
	16	;; telephon e (301) 73 4-0100.
	17	;;
	18	;; The Food and Drug A dministrat ion classi fies this software a s
	19	;; a Class I I medical device. A s such, it may not b e changed
	20	;; in any wa y. Modifi cations to this soft ware may r esult in a n
	21	;; adulterat ed medical device un der 21CFR8 20, the us e of which
	22	;; is consid ered to be a violati on of US F ederal Sta tutes.
	23	;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- +
	24
	25	*/
	26	package go v.va.med.i maging.mix datasource ;
	27
	28	import gov .va.med.Gl obalArtifa ctIdentifi er;
	29	import gov .va.med.Pa tientIdent ifier;
	30	import gov .va.med.Ro utingToken ;
	31	import gov .va.med.im aging.arti factsource .ResolvedA rtifactSou rce;
	32	import gov .va.med.im aging.core .interface s.exceptio ns.Connect ionExcepti on;
	33	import gov .va.med.im aging.core .interface s.exceptio ns.MethodE xception;
	34	import gov .va.med.im aging.data source.Abs tractVersi onableData Source;
	35	import gov .va.med.im aging.data source.Stu dyGraphDat aSourceSpi ;
	36	import gov .va.med.im aging.data source.exc eptions.Un supportedP rotocolExc eption;
	37	import gov .va.med.im aging.data source.exc eptions.Un supportedS erviceMeth odExceptio n;
	38	import gov .va.med.im aging.mix. proxy.MixD ataSourceP roxy;
	39	import gov .va.med.im aging.exch ange.busin ess.*;
	40	import gov .va.med.im aging.exch ange.enums .StudyLoad Level;
	41	import gov .va.med.im aging.mix. proxy.v1.M ixProxyUti lities;
	42	import gov .va.med.im aging.mix. proxy.v1.I mageMixPro xy;
	43	import gov .va.med.im aging.mix. proxy.v1.I mageMixPro xyFactory;
	44	import gov .va.med.im aging.mix. proxy.v1.S tudyResult ;
	45	import gov .va.med.im aging.mix. translator .MixTransl ator;
	46	import gov .va.med.im aging.prox y.exchange .StudyPara meters;
	47	import gov .va.med.im aging.tran sactioncon text.Trans actionCont extFactory ;
	48	// import gov.va.med .imaging.u rl.mix.MIX Connection ;
	49	import gov .va.med.im aging.url. mix.config uration.MI XSiteConfi guration;
	50	import gov .va.med.im aging.url. mix.except ions.MIXCo nfiguratio nException ;
	51	// import gov.va.med .imaging.u rl.mix.exc eptions.MI XConnectio nException ;
	52	import gov .va.med.im aging.url. mix.except ions.MIXMe thodExcept ion;
	53	import gov .va.med.im aging.url. mixs.MIXsC onnection;
	54
	55	import jav a.beans.XM LEncoder;
	56	import jav a.io.Buffe redOutputS tream;
	57	import jav a.io.FileN otFoundExc eption;
	58	import jav a.io.FileO utputStrea m;
	59	import jav a.io.IOExc eption;
	60	import jav a.net.Malf ormedURLEx ception;
	61	import jav a.net.URL;
	62	import jav a.util.Dat e;
	63
	64	import jav ax.xml.rpc .ServiceEx ception;
	65
	66	import org .apache.lo gging.log4 j.LogManag er;
	67	import org .apache.lo gging.log4 j.Logger;
	68
	69	/**
	70	* @author WERFEJ
	71	*
	72	*/
	73	public cla ss MixStud yGraphData SourceServ ice
	74	extends Ab stractVers ionableDat aSource
	75	implements StudyGrap hDataSourc eSpi
	76	{
	77	pr ivate fina l static L ogger logg er = LogMa nager.getL ogger(MixS tudyGraphD ataSourceS ervice.cla ss);
	78
	79	pr ivate fina l MIXsConn ection mix Connection ;
	80	pr ivate Imag eMixProxy proxy = nu ll;
	81	pr otected st atic MixTr anslator t ranslator = new MixT ranslator( );
	82	pr ivate fina l static S tring MIX_ PROXY_SERV ICE_NAME = "MIX";
	83	pr ivate fina l static S tring DATA SOURCE_VER SION = "1" ;
	84	pr ivate MIXS iteConfigu ration mix Configurat ion = null ;
	85	pu blic final static St ring SUPPO RTED_PROTO COL = "mix ";
	86
	87	/* *
	88	* The Provider will use t he create( ) factory method pre ferentiall y
	89	* ove r a constr uctor. Th is allows for cachin g of Vista StudyGraph DataSource Service
	90	* ins tances acc ording to the criter ia set her e.
	91	*
	92	* @pa ram url
	93	* @pa ram site
	94	* @re turn
	95	* @th rows Conne ctionExcep tion
	96	* @th rows Unsup portedProt ocolExcept ion
	97	*/
	98	public static Mi xStudyGrap hDataSourc eService c reate(Reso lvedArtifa ctSource r esolvedArt ifactSourc e, String protocol)
	99	throws Connectio nException , Unsuppor tedProtoco lException
	100	{
	101	re turn new M ixStudyGra phDataSour ceService( resolvedAr tifactSour ce, protoc ol);
	102	}
	103
	104	pu blic MixSt udyGraphDa taSourceSe rvice(Reso lvedArtifa ctSource r esolvedArt ifactSourc e, String protocol)
	105	th rows Unsup portedProt ocolExcept ion
	106	{
	107	supe r(resolved ArtifactSo urce, prot ocol);
	108	if(! (resolved ArtifactSo urce insta nceof Reso lvedSite) )
	109	throw new Unsupp ortedOpera tionExcept ion("The a rtifact so urce must be an inst ance of Re solvedSite and it is a '" + re solvedArti factSource .getClass( ).getSimpl eName() + "'.");
	110
	111	mixC onnection = new MIXs Connection (getMetada taUrl());
	112	}
	113
	114	/* *
	115	* The artif act source must be c hecked in the constr uctor to a ssure that it is an instance
	116	* of Resolv edSite.
	117	*
	118	* @return
	119	* /
	120	// pr ivate Reso lvedSite g etResolved Site()
	121	// {
	122	// retu rn (Resolv edSite)get ResolvedAr tifactSour ce();
	123	// }
	124	//
	125	pr ivate Sit e getMixSi te()
	126	{
	127	Site site = nu ll;
	128	try {
	129	site = new SiteI mpl("200", "DOD", "D OD", null, 0, "", 80 80, "200") ;
	130	}
	131	catc h (Malform edURLExcep tion mue)
	132	{
	133	logger .info("get MixSite ex ception: " + mue.get Message()) ;
	134	}
	135	retu rn site;
	136	}
	137
	138	pr ivate Site getSite()
	139	{
	140	retu rn getMixS ite(); // getResolve dSite().ge tSite();
	141	}
	142
	143	@O verride
	144	pu blic boole an isVersi onCompatib le() {
	145	MIXS iteConfigu ration sit eConfig = null;
	146	try
	147	{
	148	siteCo nfig = get MixSiteCon figuration ();
	149	}
	150	catc h(IOExcept ion ioX)
	151	{
	152	logger .error("Er ror readin g configur ation for datasource ", ioX);
	153	return false;
	154	}
	155	// i f versioni ng is turn ed on for this site configurat ion
	156	if(s iteConfig. isUseVersi oning())
	157	{
	158	MixPro xyUtilitie s.isMixSit eServiceAv ailable(ge tSite(), M IX_PROXY_S ERVICE_NAM E, DATASOU RCE_VERSIO N);
	159	}
	160	retu rn true;
	161	}
	162
	163	pr ivate Imag eMixProxy getProxy()
	164	th rows IOExc eption
	165	{
	166	if(p roxy == nu ll)
	167	{
	168	MIXSit eConfigura tion mixSi teConfigur ation = nu ll;
	169	try
	170	{
	171	mixSiteC onfigurati on =
	172	MixDataSou rceProvide r.getMixCo nfiguratio n().getSit eConfigura tion(getSi te().getSi teNumber() , null);
	173	}
	174	catch( MIXConfigu rationExce ption ecX)
	175	{
	176	throw ne w IOExcept ion(ecX);
	177	}
	178	proxy = ImageMix ProxyFacto ry.getSing leton().ge t(
	179	mixConnect ion.getURL ().getHost (),
	180	mixConnect ion.getURL ().getPort (),
	181	mixSiteCon figuration , null,
	182	MixDataSou rceProvide r.getMixCo nfiguratio n());
	183	}
	184	retu rn proxy;
	185	}
	186
	187
	188
	189	/* (non-Java doc)
	190	* @see gov. va.med.ima ging.datas ource.Stud yGraphData SourceSpi# getUrl()
	191	* /
	192	pu blic URL g etUrl() {
	193	retu rn mixConn ection.get URL();
	194	}
	195
	196	@S uppressWar nings("box ing")
	197	@O verride
	198	pu blic Study SetResult getPatient Studies(Ro utingToken globalRou tingToken,
	199	Pati entIdentif ier patien tIdentifie r,
	200	Stud yFilter fi lter,
	201	Stud yLoadLevel studyLoad Level)
	202	th rows Unsup portedOper ationExcep tion, MIXM ethodExcep tion, Conn ectionExce ption
	203	{
	204	MixD ataSourceC ommon.setD ataSourceM ethodAndVe rsion("get PatientStu dies", DAT ASOURCE_VE RSION);
	205	logg er.info("g etPatientS tudies for patient ( " + patien tIdentifie r + ") Tra nsactionCo ntext (" + Transacti onContextF actory.get ().getDisp layIdentit y() + ")." );
	206	if(p atientIden tifier.get PatientIde ntifierTyp e().isLoca l())
	207	throw new MIXMet hodExcepti on("Cannot use local patient i dentifier to retriev e remote p atient inf ormation") ;
	208	Stri ng patient Icn = pati entIdentif ier.getVal ue();
	209
	210	// v alidate pr otocol reg istration!
	211	try {
	212	new Mi xDataSourc eProxy(Mix DataSource Provider.g etMixConfi guration() );
	213	}
	214	catc h (Connect ionExcepti on e)
	215	{
	216	logger .debug(e.g etMessage( ));
	217	throw new MIXMet hodExcepti on("Mix pr otocol reg istration failed: ", e);
	218	}
	219
	220	// n ow get met adata for ICN and da te range ( (MIX Pass 1, level 1 &2)
	221
	222	// try
	223	// {
	224	// mixCon nection.co nnect();
	225	// }
	226	// catc h(IOExcept ion ioX)
	227	// {
	228	// logger .error("Er ror gettin g patient studies", ioX);
	229	// throw new MIXCon nectionExc eption(ioX );
	230	// }
	231	try
	232	{
	233	StudyP arameters parameters =
	234	new Stud yParameter s(
	235	patientIcn ,
	236	filter == null ? new Date(0l) : filter.g etFromDate (),
	237	filter == null ? new Date() : filter.get ToDate(),
	238	filter == null ? nul l : filter .getStudyI d()
	239	);
	240	StudyR esult stud yResult = getProxy() .getStudie s(paramete rs);
	241	gov.va .med.imagi ng.mix.web services.r est.types. v1.ReportS tudyListRe sponseType mixStudie s = studyR esult.getS tudies();
	242	logger .info("get PatientStu dies got [ " + (mixSt udies == n ull ? "0" : mixStudi es.getStud ies().leng th) + "] s tudies fro m site [" + getSite( ).getSiteN umber() + "]");
	243	if (mi xStudies ! = null)
	244	{
	245	String d umpExchang eGraphs = System.get env("dumpd odexchange graphs");
	246	if (dump ExchangeGr aphs != nu ll && dump ExchangeGr aphs.equal sIgnoreCas e("true"))
	247	{
	248	dumpDodStu dyGraph(pa tientIcn, mixStudies .getStudie s());
	249	}
	250	}
	251	return StudySetR esult.crea teFullResu lt(transla tor.transf ormStudies (getSite() , mixStudi es.getStud ies(),
	252	filter, Mi xDataSourc eProvider. getMixConf iguration( ).getEmpty StudyModal ities()));
	253	}
	254	catc h(IOExcept ion ioX)
	255	{
	256	logger .error("Er ror gettin g patient studies", ioX);
	257	throw new MIXMet hodExcepti on(ioX);
	258	}
	259	catc h(ServiceE xception s X) {
	260	logger .error("Er ror gettin g patient studies", sX);
	261	throw new MIXMet hodExcepti on(sX);
	262	}
	263	}
	264
	265	pr ivate void dumpDodSt udyGraph(S tring pati entIcn, go v.va.med.i maging.mix .webservic es.rest.ty pes.v1.Stu dyType[] e xchangeStu dies)
	266	{
	267	Stri ng vixcach e = System .getenv("v ixcache");
	268	if ( vixcache ! = null)
	269	{
	270	XMLEnc oder xmlEn coder = nu ll;
	271	try
	272	{
	273	String f ileSpec = vixcache + "/dodexch ange" + pa tientIcn + ".xml";
	274	xmlEncod er = new X MLEncoder( new Buffer edOutputSt ream(new F ileOutputS tream(file Spec)));
	275	xmlEncod er.writeOb ject(excha ngeStudies );
	276	}
	277	catch (FileNotFo undExcepti on ex)
	278	{
	279	logger.e rror("Erro r dumping study grap h: " + ex. getMessage ());
	280	}
	281	finall y
	282	{
	283	if (xmlE ncoder != null)
	284	{
	285	xmlEncoder .close();
	286	}
	287	}
	288	}
	289	}
	290
	291	pr ivate MIXS iteConfigu ration get MixSiteCon figuration ()
	292	th rows IOExc eption
	293	{
	294	if(m ixConfigur ation == n ull)
	295	{
	296	try
	297	{
	298	mixConfi guration =
	299	MixDataSou rceProvide r.getMixCo nfiguratio n().getSit eConfigura tion(getSi te().getSi teNumber() , null);
	300	}
	301	catch( MIXConfigu rationExce ption ecX)
	302	{
	303	throw ne w IOExcept ion(ecX);
	304	}
	305	}
	306	retu rn mixConf iguration;
	307	}
	308
	309	/* (non-Java doc)
	310	* @see gov. va.med.ima ging.datas ource.Stud yGraphData SourceSpi# getStudy(j ava.lang.S tring, gov .va.med.Gl obalArtifa ctIdentifi er)
	311	* /
	312	@O verride
	313	pu blic Study getStudy( PatientIde ntifier pa tientIdent ifier, Glo balArtifac tIdentifie r studyId)
	314	th rows Metho dException , Connecti onExceptio n
	315	{
	316	thro w new Unsu pportedSer viceMethod Exception( StudyGraph DataSource Spi.class, "getStudy ");
	317	}
	318
	319	/* (non-Java doc)
	320	* @see gov. va.med.ima ging.datas ource.Stud yGraphData SourceSpi# getStudyRe port(java. lang.Strin g, gov.va. med.Global ArtifactId entifier)
	321	* /
	322	@O verride
	323	pu blic Strin g getStudy Report(Pat ientIdenti fier patie ntIdentifi er, Global ArtifactId entifier s tudyId)
	324	th rows Metho dException , Connecti onExceptio n
	325	{
	326	thro w new Unsu pportedSer viceMethod Exception( StudyGraph DataSource Spi.class, "getStudy Report");
	327	}
	328
	329	}