269. EPMO Open Source Coordination Office Redaction File Detail Report

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269.1 Files compared

#	Location	File	Last Modified
1	IV-eHMP_CIF.zip\IMAG_Source\VISA\Java\ImagingDicomDCFCommon\src\java\gov\va\med\imaging\dicom\dcftoolkit\common\impl	DicomDataSetImpl.java	Mon Dec 4 21:35:26 2017 UTC
2	IV-eHMP_CIF.zip\IMAG_Source\VISA\Java\ImagingDicomDCFCommon\src\java\gov\va\med\imaging\dicom\dcftoolkit\common\impl	DicomDataSetImpl.java	Mon Dec 4 22:02:20 2017 UTC

269.2 Comparison summary

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Description	Text Blocks	Lines
Unchanged	2	3074
Changed	1	2
Inserted	0	0
Removed	0	0

269.3 Comparison options

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Character case	Differences in character case are significant
Line endings	Differences in line endings (`CR` and `LF` characters) are ignored
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269.4 Active regular expressions

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269.5 Comparison detail

	1	/**
	2	*
	3	Package: MAG - Vis tA Imaging
	4	WARNING: Per VHA D irective 2 004-038, t his routin e should n ot be modi fied.
	5	Date Cre ated: Octo ber 19, 20 05
	6	Site Nam e: Washin gton OI Fi eld Office , Silver S pring, MD
	7	Developer: PETERB
	8	Descript ion:
	9
	10	;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- +
	11	;; Property of the US Government .
	12	;; No permis sion to co py or redi stribute t his softwa re is give n.
	13	;; Use of un released v ersions of this soft ware requi res the us er
	14	;; to execu te a writt en test ag reement wi th the Vis tA Imaging
	15	;; Developm ent Office of the De partment o f Veterans Affairs,
	16	;; telephon e (301) 73 4-0100.
	17	;;
	18	;; The Food and Drug A dministrat ion classi fies this software a s
	19	;; a Class I I medical device. A s such, it may not b e changed
	20	;; in any wa y. Modifi cations to this soft ware may r esult in a n
	21	;; adulterat ed medical device un der 21CFR8 20, the us e of which
	22	;; is consid ered to be a violati on of US F ederal Sta tutes.
	23	;; +-------- ---------- ---------- ---------- ---------- ---------- ---------- +
	24	*/
	25	package go v.va.med.i maging.dic om.dcftool kit.common .impl;
	26
	27	import gov .va.med.im aging.Stri ngUtil;
	28	import gov .va.med.im aging.dico m.common.i nterfaces. IDicomData Set;
	29	import gov .va.med.im aging.dico m.common.i nterfaces. IDicomElem ent;
	30	import gov .va.med.im aging.dico m.common.i nterfaces. IIODViolat ionList;
	31	import gov .va.med.im aging.dico m.dcftoolk it.common. impl.rdsr. RDSRProces sor;
	32	import gov .va.med.im aging.dico m.dcftoolk it.common. mapping.Bu sinessObje ctToDicomS CUTranslat or;
	33	import gov .va.med.im aging.dico m.dcftoolk it.common. mapping.Di comToBusin essObjectT ranslator;
	34	import gov .va.med.im aging.dico m.dcftoolk it.common. validation .DicomInst anceValida tor;
	35	import gov .va.med.im aging.exch ange.busin ess.Imagin gServiceRe quest;
	36	import gov .va.med.im aging.exch ange.busin ess.Reques tedProcedu re;
	37	import gov .va.med.im aging.exch ange.busin ess.Schedu ledProcedu reStep;
	38	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomAE;
	39	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomCorre ctInfo;
	40	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomMap;
	41	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomReque stParamete rs;
	42	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomServe rConfigura tion;
	43	import gov .va.med.im aging.exch ange.busin ess.dicom. DicomUtils ;
	44	import gov .va.med.im aging.exch ange.busin ess.dicom. InstanceFi le;
	45	import gov .va.med.im aging.exch ange.busin ess.dicom. Instrument Config;
	46	import gov .va.med.im aging.exch ange.busin ess.dicom. MockDicomM ap;
	47	import gov .va.med.im aging.exch ange.busin ess.dicom. PatientRef ;
	48	import gov .va.med.im aging.exch ange.busin ess.dicom. PatientStu dyInfo;
	49	import gov .va.med.im aging.exch ange.busin ess.dicom. ProcedureR ef;
	50	import gov .va.med.im aging.exch ange.busin ess.dicom. SOPInstanc e;
	51	import gov .va.med.im aging.exch ange.busin ess.dicom. Series;
	52	import gov .va.med.im aging.exch ange.busin ess.dicom. StorageCom mitElement ;
	53	import gov .va.med.im aging.exch ange.busin ess.dicom. Study;
	54	import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .DicomExce ption;
	55	import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .IllegalQu eryDataExc eption;
	56	import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .UnknownSO PClassExce ption;
	57	import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .ValidateI ODExceptio n;
	58	import gov .va.med.im aging.exch ange.busin ess.dicom. exceptions .ValidateV RException ;
	59	import gov .va.med.im aging.exch ange.busin ess.dicom. rdsr.Dose;
	60
	61	import jav a.io.ByteA rrayOutput Stream;
	62	import jav a.io.IOExc eption;
	63	import jav a.io.Unsup portedEnco dingExcept ion;
	64	import jav a.util.Arr ayList;
	65	import jav a.util.Has hMap;
	66	import jav a.util.Has hSet;
	67	import jav a.util.Ite rator;
	68	import jav a.util.Lis t;
	69	import jav a.util.Vec tor;
	70
	71	import jav ax.xml.par sers.Parse rConfigura tionExcept ion;
	72	import jav ax.xml.tra nsform.Tra nsformerEx ception;
	73
	74	import org .apache.lo gging.log4 j.LogManag er;
	75	import org .apache.lo gging.log4 j.Logger;
	76
	77	import com .lbs.DCS.A ttributeTa g;
	78	import com .lbs.DCS.D CM;
	79	import com .lbs.DCS.D CSExceptio n;
	80	import com .lbs.DCS.D icomDataDi ctionary;
	81	import com .lbs.DCS.D icomDataSe t;
	82	import com .lbs.DCS.D icomElemen t;
	83	import com .lbs.DCS.D icomFileOu tput;
	84	import com .lbs.DCS.D icomSQElem ent;
	85	import com .lbs.DCS.D icomSessio nSettings;
	86	import com .lbs.DCS.D icomStream Writer;
	87	import com .lbs.DCS.U ID;
	88	import com .lbs.DCS.V RValidator ;
	89	import com .lbs.DCS.V alidationE rror;
	90	import com .lbs.DCS.V alidationE rrorList;
	91
	92	/**
	93	*
	94	* TODO To change th e template for this generated type comme nt go to
	95	* Window - Preferen ces - Java - Code St yle - Code Templates
	96	*
	97	*
	98	* @author William P eterson
	99	*
	100	*/
	101	public cla ss DicomDa taSetImpl implements IDicomDat aSet {
	102
	103	pr ivate stat ic final S tring RADI ATION_DOSE _SOP_CLASS _UID = "1. 2.840.1000 8.5.1.4.1. 1.88.67";
	104
	105	Di comDataSet dataSet = null;
	106
	107	// Business object ref erences
	108	Pa tientRef p atientRef = null;
	109	Pr ocedureRef procedure Ref = null ;
	110	Se ries serie s = null;
	111	St udy study = null;
	112	SO PInstance sopInstanc e = null;
	113	Im agingServi ceRequest imagingSer viceReques t = null;
	114	Re questedPro cedure req uestedProc edure = nu ll;
	115	Sc heduledPro cedureStep scheduled ProcedureS tep = null ;
	116	Di comRequest Parameters serviceRe questParam eters = nu ll;
	117	Ha shSet<Dico mMap> serv iceMapping Set=null;
	118	Ha shSet<Dico mMap> HISM appingSet = null;
	119	HashMa p<String, String> HI SChanges = null;
	120	String acquisiti onSite = n ull;
	121	String sourceAET = null;
	122	String receivedT ransferSyn tax = null ;
	123	String name = nu ll;
	124	String affectSOP Class = nu ll;
	125	String transacti onUID = nu ll;
	126	String aETDefaul tServiceTy pe = null;
	127
	128	privat e static L ogger logg er = LogMa nager.getL ogger(Dico mDataSetIm pl.class);
	129	pr ivate stat ic final D icomServer Configurat ion config = DicomSe rverConfig uration.ge tConfigura tion();
	130	pr ivate stat ic final S tring orig inalAttrib uteSequenc eTag = "04 00,0561";
	131
	132
	133	/* *
	134	* Con structor
	135	*
	136	*/
	137	public DicomData SetImpl() {
	138	th is.dataSet = new Dic omDataSet( );
	139	}
	140
	141	/**
	142	* Con structor
	143	*
	144	* @pa ram arg0
	145	*/
	146	public DicomData SetImpl(Di comDataSet arg0) {
	147	th is.dataSet = arg0;
	148	}
	149
	150
	151	/* (no n-Javadoc)
	152	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get DicomDataS et()
	153	*/
	154	public Object ge tDicomData Set() {
	155	//
	156	re turn this. dataSet;
	157	}
	158
	159
	160	/* (no n-Javadoc)
	161	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#set DicomDataS et(java.la ng.Object)
	162	*/
	163	public void setD icomDataSe t(Object d icomDataSe t) {
	164	th is.dataSet = (DicomD ataSet) di comDataSet ;
	165	}
	166
	167
	168	/* (non-Java doc)
	169	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getDi comElement (java.lang .String)
	170	* /
	171	pu blic IDico mElement g etDicomEle ment(Strin g dicomTag Name) thro ws DicomEx ception {
	172	Dico mElementIm pl dicomEl ementImpl = null;
	173
	174	try {
	175	if (di comTagName == null) // d on't crash , if incom ing tag is null
	176	return d icomElemen tImpl;
	177	if(this. dataSet.co ntainsElem ent(new At tributeTag (dicomTagN ame))){
	178	Dico mElement e lement = t his.dataSe t.findElem ent(new At tributeTag (dicomTagN ame));
	179	dico mElementIm pl = new D icomElemen tImpl(elem ent);
	180	}
	181	}
	182	catc h (DCSExce ption dcse )
	183	{
	184	logger.e rror(dcse. getMessage ());
	185	logger .error(thi s.getClass ().getName ()+
	186	" Could no t retrieve Dicom Ele ment with tag name: " + dicomT agName);
	187	throw new DicomE xception(" Failure to retrieve DICOM Elem ent.", dcs e);
	188	}
	189	retu rn dicomEl ementImpl;
	190	}
	191
	192
	193	/* (non-Java doc)
	194	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getDi comElement Value(java .lang.Stri ng, java.l ang.String )
	195	* /
	196	pu blic Strin g getDicom ElementVal ue(String dicomTagNa me, String dicomTag2 Name)
	197	throws DicomExce ption {
	198	Stri ng strval = null;
	199
	200	try {
	201	if (di comTagName == null) // don't c rash, retu rn null if incoming
	202	// tag i s null
	203	return s trval;
	204	if (di comTag2Nam e == null) // top le vel elemen t
	205	strval = this.data Set.getEle mentString Value(new AttributeT ag(
	206	di comTagName ));
	207	else { // we dea l with a s equence el ement
	208	DicomSQE lement sq_ e = (Dicom SQElement) this.data Set
	209	.f indElement (new Attri buteTag(di comTagName ));
	210	if (sq_e != null) {
	211	// remove element fr om sequenc e dataset
	212	DicomDataS et sq_ds = sq_e.SQ() ; // handl e 1 sequen ce element
	213	// only (f or now)
	214	strval = s q_ds.getEl ementStrin gValue(new Attribute Tag(
	215	dico mTag2Name) );
	216	}
	217	}
	218	} ca tch (DCSEx ception dc se) {
	219	logger .error(dcs e.getMessa ge());
	220	logger .error(thi s.getClass ().getName ()
	221	+ "Could n ot get Dic om Element value of tag name: "
	222	+ dicomTag Name
	223	+ ((dicomT ag2Name == null) ? " " : (", " + dicomTa g2Name)));
	224	throw new DicomE xception(" Failure to retrieve DICOM Elem ent value. ", dcse);
	225	}
	226	if ( (strval != null) && (!strval.i sEmpty()))
	227	strval = strval. trim();
	228	retu rn strval;
	229	}
	230
	231	// IMPROVE Ch ange retur n value to void. Co mpile and test to se e if somet hing break s.
	232	/*
	233	*
	234	* /
	235	pu blic IDico mElement i nsertDicom Element(St ring dicom TagName, S tring dico mTag2Name, String va lue) throw s DicomExc eption {
	236	Di comElement Impl dicom ElementImp l = null;
	237
	238	tr y {
	239	if ( dicomTagNa me == null ) // don't cra sh, return null if i ncoming ta g is null
	240	return dicomElem entImpl;
	241	if ( dicomTag2N ame == nul l){ // top level ele ment
	242	value = this.forma tStringVal ue(dicomTa gName, val ue);
	243	this.d ataSet.ins ert(new At tributeTag (dicomTagN ame), valu e);
	244	}
	245	else { // we deal with a sequence element
	246	DicomS QElement s q_e = null ;
	247	if (th is.dataSet .containsE lement(new Attribute Tag(dicomT agName))) {
	248	sq_e = ( DicomSQEle ment)this. dataSet.fi ndElement( new Attrib uteTag(dic omTagName) );
	249	DicomDat aSet sq_ds = sq_e.SQ (); // han dle 1 sequ ence eleme nt only (f or now)
	250	Stri ng nuValue = this.fo rmatString Value(dico mTag2Name, value);
	251	sq_ds.in sert(new A ttributeTa g(dicomTag 2Name), nu Value);
	252	DicomSQE lement nuS equence = new DicomS QElement(n ew Attribu teTag(dico mTagName), sq_ds);
	253	this.dat aSet.inser t(nuSequen ce);
	254	}
	255	else{
	256	Stri ng nuValue = this.fo rmatString Value(dico mTag2Name, value);
	257	DicomDat aSet sq_ds = new Dic omDataSet( );
	258	sq_ds.in sert(new A ttributeTa g(dicomTag 2Name), nu Value);
	259	sq_e = n ew DicomSQ Element(ne w Attribut eTag(dicom TagName), sq_ds);
	260	this.dat aSet.inser t(sq_e);
	261	}
	262	}
	263	}
	264	ca tch (DCSEx ception dc se)
	265	{
	266	lo gger.error (dcse.getM essage());
	267	logg er.error(t his.getCla ss().getNa me()+
	268	"Cou ld not ins ert Dicom Element wi th tag nam e: "
	269	+ dicomT agName + ( (dicomTag2 Name==null )?" ":(", " + dicomT ag2Name))) ;
	270	thro w new Dico mException ("Failure to insert DICOM Elem ent.", dcs e);
	271	}
	272	retu rn dicomEl ementImpl;
	273	}
	274
	275	/* (no n-Javadoc)
	276	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#rem oveDicomEl ement(java .lang.Stri ng, java.l ang.String )
	277	*/
	278	public boolean r emoveDicom Element(St ring dicom TagName, S tring dico mTag2Name)
	279	throws D icomExcept ion {
	280	bool ean remove d=false;
	281
	282	try {
	283	if (di comTagName == null) // d on't crash , return n ull if inc oming tag is null
	284	return r emoved;
	285	if (di comTag2Nam e == null) // top l evel eleme nt
	286	removed = this.dat aSet.remov eElement(n ew Attribu teTag(dico mTagName)) ;
	287	else { // we de al with a sequence e lement
	288	DicomSQE lement sq_ e = (Dicom SQElement) this.dataS et.findEle ment(new A ttributeTa g(dicomTag Name));
	289	if (sq_e !=null) {
	290	// remove element fr om sequenc e dataset
	291	DicomDataS et sq_ds = sq_e.SQ() ; // handl e 1 sequen ce element only (for now)
	292	removed = sq_ds.remo veElement( new Attrib uteTag(dic omTag2Name ));
	293	}
	294	}
	295	}
	296	catc h (DCSExce ption dcse )
	297	{
	298	logger.e rror(dcse. getMessage ());
	299	logger .error(thi s.getClass ().getName ()+
	300	"Could not remove Di com Elemen t with tag name: "
	301	+ dicomTag Name + ((d icomTag2Na me==null)? " ":(", " + dicomTag 2Name)));
	302	throw new DicomE xception(" Failure to remove DI COM Elemen t.", dcse) ;
	303	}
	304	retu rn removed ;
	305	}
	306
	307	/*
	308	* (no n-Javadoc)
	309	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#c ontainsDic omElement( java.lang. String, ja va.lang.St ring)
	310	*/
	311	pu blic boole an contain sDicomElem ent(String dicomTagN ame, Strin g dicomTag 2Name){
	312	bool ean elemen tExist = f alse;
	313	try {
	314	if (di comTagName == null){ // d on't crash , return n ull if inc oming tag is null
	315	throw ne w DCSExcep tion("Tag is null");
	316	}
	317	if(thi s.dataSet. containsEl ement(new AttributeT ag(dicomTa gName))){
	318	if (dico mTag2Name == null){ // top level ele ment found
	319	elementExi st = true;
	320	} else { // we deal with a se quence ele ment
	321	DicomSQEle ment sq_e = (DicomSQ Element)th is.dataSet .findEleme nt(new Att ributeTag( dicomTagNa me));
	322	if (sq_e== null) // n o sequence element f ound
	323	el ementExist = false;
	324	else {
	325	// remove el ement from sequence dataset
	326	Di comDataSet sq_ds = s q_e.SQ(); // handle 1 sequence element o nly (for n ow)
	327	el ementExist = sq_ds.c ontainsEle ment(new A ttributeTa g(dicomTag 2Name));
	328	}
	329	}
	330	}
	331	else{
	332	elementE xist = fal se;
	333	}
	334	}
	335	catc h (DCSExce ption dcse )
	336	{
	337	logger.e rror(dcse. getMessage ());
	338	logger .error(thi s.getClass ().getName ()+
	339	"Could not determine if Dicom Element ex ist with t ag name(s) : " + dico mTagName + ((dicomTa g2Name==nu ll)?" nul l":dicomTa g2Name));
	340	elemen tExist = f alse;
	341	}
	342	retu rn element Exist;
	343	}
	344
	345	/*
	346	* (no n-Javadoc)
	347	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#i nsertAndRe cordNewVal ue(java.la ng.String, java.lang .String, j ava.lang.S tring, jav a.lang.boo lean)
	348	*/
	349	pu blic boole an insertA ndRecordNe wValue (St ring tag, String tag 2, String value, boo lean ignor eNew)
	350	{
	351	// c heck if va lue is new
	352	Stri ng tagValu e=null;
	353	try {
	354	if (th is.contain sDicomElem ent(tag, t ag2))
	355	tagValue = this.ge tDicomElem entValue(t ag, tag2); // fetch old value
	356	else {
	357	ignoreNe w = true; // force i nsert of n ew value
	358	tagValue = ""; // set old value to empty Stri ng
	359	}
	360	if (ig noreNew \|\| ((tagValu e != null) && (!tagV alue.equal s(value))) ) {
	361
	362	// do in sert old v alue to or iginal seq uence and value to d ataset
	363	try {
	364	if (tag2== null) {
	365	th is.insertD icomElemen t(original AttributeS equenceTag , tag, tag Value);
	366	}
	367	else { // sequence tag
	368	Di comDataSet dataSet = null;
	369	Di comDataSet sq_ds = n ull; // or ig SQ data set
	370	da taSet = (D icomDataSe t)this.get DicomDataS et();
	371	Di comSQEleme nt origSQ_ e = (Dicom SQElement) this.data Set.findEl ement(new AttributeT ag(origina lAttribute SequenceTa g));
	372	if (origSQ_e == null) { // inser t orig SQ with old t ag value i n belly to parent da taset
	373	sq_d s = new Di comDataSet ();
	374	sq_ds.inse rt(new Att ributeTag( tag), tagV alue);
	375	origSQ_e = new Dicom SQElement( new Attrib uteTag(ori ginalAttri buteSequen ceTag), sq _ds);
	376	dataSet.in sert(origS Q_e);
	377	}
	378	el se { // ori g SQ alrea dy exists
	379	sq_d s = origSQ _e.SQ();
	380	//FI XME-fix th is dead co de. Not s ure what t o do with the else s tatement.
	381	if ( tag2==null ) { // ins ert old el ement to o rig SQ
	382	sq_ds. insert(new Attribute Tag(tag), tagValue);
	383	}
	384	else { // find/ create old SQ in ori g SQ
	385	DicomS QElement c hildSQ_e = getChildS equenceEle ment(tag, sq_ds);
	386	DicomD ataSet sq_ ds2 = null ; // child SQ datase t
	387	if (ch ildSQ_e == null) { / / create c hild SQ wi th old ele ment in be lly and ad d child SQ to orig S Q
	388	sq_ds2 = new Dicom DataSet();
	389	sq_d s2.insert( new Attrib uteTag(tag 2), tagVal ue);
	390	chil dSQ_e = ne w DicomSQE lement(new Attribute Tag(tag), sq_ds2);
	391	sq_d s.insert(c hildSQ_e);
	392	} else { // ins ert old SQ element t o orig SQ' s child SQ
	393	sq_ds2 = childSQ_e .SQ();
	394	sq_ds2.i nsert(new AttributeT ag(tag2), tagValue);
	395	}
	396
	397	}
	398	}
	399	}
	400	} catch (DCSExcept ion dcse) {
	401	// do high level log only, Det ailed Erro r logged o n lower le vel
	402	logger.err or("Insert ing (" + t ag + ") wi th value " + tagValu e + " to O riginal At tribute se quence Fai led ");
	403	}
	404
	405	try {
	406	//now inse rt the new value
	407	this.inser tDicomElem ent(tag, t ag2, value );
	408	} catch (DicomExce ption de) {
	409	// do high level log only, Det ailed Erro r logged o n lower le vel
	410	logger.err or("Insert ing (" + t ag + ") wi th value " + value + " to data set Failed ");
	411
	412	}
	413	}
	414	} ca tch (Dicom Exception de) {
	415	logger .error("Ge tting (" + tag + ") from datas et for che ck/update failed ");
	416	}
	417	retu rn false;
	418	}
	419
	420	pr ivate Dico mSQElement getChildS equenceEle ment(Strin g tag, Dic omDataSet sq_ds) thr ows DCSExc eption
	421	{
	422	try
	423	{
	424	return (DicomSQE lement) sq _ds.findEl ement(new AttributeT ag(tag));
	425	}
	426	catc h (DCSExce ption e)
	427	{
	428
	429	}
	430	retu rn null;
	431	}
	432
	433
	434	/*
	435	*
	436	* /
	437	public HashSet<D icomMap> g etHISMappi ngSet() {
	438	if (this.HIS MappingSet == null) {
	439	this .HISMappin gSet = get HISPropert yMappingSe t();
	440	}
	441	re turn this. HISMapping Set;
	442	}
	443
	444	/*
	445	* (no n-Javadoc)
	446	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etQueryMap pingSet(ja va.util.Ha shSet)
	447	*/
	448	public void setQ ueryMappin gSet(HashS et<DicomMa p> mapping Set) {
	449	th is.service MappingSet = mapping Set;
	450	}
	451
	452	/*
	453	* (no n-Javadoc)
	454	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etQueryMap pingSet()
	455	*/
	456	public HashSet<D icomMap> g etQueryMap pingSet() {
	457	retu rn this.se rviceMappi ngSet;
	458	}
	459
	460	/* (non-Java doc)
	461	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get StudyInsta nceUID()
	462	*/
	463	public String ge tStudyInst anceUID() {
	464	St ring study InstanceUI D = null;
	465	tr y{
	466	studyIns tanceUID = this.data Set.getEle mentString Value(DCM. E_STUDY_IN STANCE_UID );
	467	}
	468	ca tch(DCSExc eption dcs X){
	469	return n ull;
	470	}
	471	re turn study InstanceUI D;
	472	}
	473
	474	/*
	475	* (no n-Javadoc)
	476	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etStudyIns tanceUID(j ava.lang.S tring)
	477	*/
	478	@O verride
	479	pu blic void setStudyIn stanceUID( String stu dyInstance UID)
	480	{
	481	tr y{
	482	inse rtDicomEle ment("0020 ,000d", nu ll, studyI nstanceUID );
	483	}
	484	ca tch(DicomE xception d csX){
	485	logg er.error(" Couldn't i nsert stud yInstanceU ID into th e dataSet" );
	486	}
	487	}
	488
	489	/* (no n-Javadoc)
	490	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID()
	491	*/
	492	public String ge tSeriesIns tanceUID() {
	493	St ring serie sInstanceU ID = null;
	494	tr y{
	495	seriesIn stanceUID = this.dat aSet.getEl ementStrin gValue(DCM .E_SERIES_ INSTANCE_U ID);
	496	}
	497	ca tch(DCSExc eption dcs X){
	498	return n ull;
	499	}
	500	re turn serie sInstanceU ID;
	501	}
	502
	503	/*
	504	* (no n-Javadoc)
	505	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etSeriesIn stanceUID( java.lang. String)
	506	*/
	507	@O verride
	508	pu blic void setSeriesI nstanceUID (String se riesInstan ceUID)
	509	{
	510	tr y{
	511	inse rtDicomEle ment("0020 ,000e", nu ll, series InstanceUI D);
	512	}
	513	ca tch(DicomE xception d csX){
	514	logg er.error(" Couldn't i nsert seri esInstance UID into t he dataSet ");
	515	}
	516	}
	517
	518	/* (no n-Javadoc)
	519	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SOPInstanc eUID()
	520	*/
	521	public String ge tSOPInstan ceUID() {
	522	St ring sopIn stanceUID = null;
	523	tr y{
	524	sopInsta nceUID = t his.dataSe t.getEleme ntStringVa lue(DCM.E_ SOPINSTANC E_UID);
	525	}
	526	ca tch(DCSExc eption dcs X){
	527	return n ull;
	528	}
	529	re turn sopIn stanceUID;
	530	}
	531
	532	/*
	533	* (no n-Javadoc)
	534	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#s etSOPInsta nceUID(jav a.lang.Str ing)
	535	*/
	536	@O verride
	537	pu blic void setSOPInst anceUID(St ring sopIn stanceUID)
	538	{
	539	tr y{
	540	inse rtDicomEle ment("0008 ,0018", nu ll, sopIns tanceUID);
	541	}
	542	ca tch(DicomE xception d csX){
	543	logg er.error(" Couldn't i nsert sopI nstanceUID into the dataSet");
	544	}
	545	}
	546
	547	/* (no n-Javadoc)
	548	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID(ja va.lang.St ring)
	549	*/
	550	public boolean g etStudyIns tanceUID(S tring stud yInstanceU ID) {
	551	re turn false ;
	552	}
	553
	554	/* (no n-Javadoc)
	555	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SeriesInst anceUID(ja va.lang.St ring)
	556	*/
	557	public boolean g etSeriesIn stanceUID( String ser iesInstanc eUID) {
	558	re turn false ;
	559	}
	560
	561	/* (no n-Javadoc)
	562	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get SOPInstanc eUID(java. lang.Strin g)
	563	*/
	564	public boolean g etSOPInsta nceUID(Str ing sopIns tanceUID) {
	565	re turn false ;
	566	}
	567
	568	/*
	569	* (no n-Javadoc)
	570	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#u pdateHISCh angesToDDS (java.util .HashMap)
	571	*/
	572	public void upda teHISChang esToDDS(Ha shMap<Stri ng, String > HISChang es)throws DicomExcep tion{
	573
	574	th is.HISChan ges = HISC hanges;
	575	if (this.HISC hanges != null){
	576	this.HIS MappingSet = this.ge tHISMappin gSet();
	577	sanitize HISChanges (HISChange s);
	578	Business ObjectToDi comSCUTran slator.upd ateDataSet FromHISCha nges(this, this.HISC hanges,
	579	this.HISMa ppingSet);
	580	}
	581	}
	582
	583	/* (no n-Javadoc)
	584	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#get Acquisitio nSite()
	585	*/
	586	public String ge tAcquisiti onSite() {
	587	re turn this. acquisitio nSite;
	588	}
	589
	590	/* (no n-Javadoc)
	591	* @se e gov.va.m ed.imaging .dicom.dcf toolkit.sc u.interfac es.IDicomD ataSet#set Acquisitio nSite(java .lang.Stri ng)
	592	*/
	593	public void setA cquisition Site(Strin g site) {
	594	th is.acquisi tionSite = site;
	595	}
	596
	597	/*
	598	* (no n-Javadoc)
	599	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etSOPClass ()
	600	*/
	601	pu blic Strin g getSOPCl ass(){
	602	St ring sopCl ass = null ;
	603	tr y{
	604	sopClass = this.da taSet.getE lementStri ngValue(DC M.E_SOPCLA SS_UID);
	605	}
	606	ca tch(DCSExc eption dcs X){
	607	return n ull;
	608	}
	609	re turn sopCl ass;
	610	}
	611
	612
	613
	614	/* (no n-Javadoc)
	615	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getManu facturer()
	616	* /
	617	@O verride
	618	pu blic Strin g getManuf acturer() {
	619	St ring manuf acturersNa me = null;
	620	tr y{
	621	manu facturersN ame = this .dataSet.g etElementS tringValue (DCM.E_MAN UFACTURER) ;
	622	}
	623	ca tch(DCSExc eption dcs X){
	624	return n ull;
	625	}
	626	re turn manuf acturersNa me;
	627	}
	628
	629	/* (non-Java doc)
	630	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getMode lName()
	631	* /
	632	@O verride
	633	pu blic Strin g getModel Name() {
	634	St ring model Name = nul l;
	635	tr y{
	636	mode lName = th is.dataSet .getElemen tStringVal ue(DCM.E_M ANUFACTURE RS_MODEL_N AME);
	637	}
	638	ca tch(DCSExc eption dcs X){
	639	return n ull;
	640	}
	641	re turn model Name;
	642	}
	643
	644
	645	/* (non-Java doc)
	646	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#part10B uffer()
	647	* /
	648	pu blic byte[ ] part10Bu ffer(boole an updateO nly) {
	649
	650	by te[] data = null;
	651
	652	tr y {
	653	Stri ng outputT S=UID.TRAN SFERLITTLE ENDIAN; // Little En dian Impli cit VR (de fault)
	654	if ( updateOnl y ) {
	655	String inputTS=t his.getRec eivedTrans ferSyntax( );
	656	if (in putTS != n ull && inp utTS.start sWith("1.2 .840.10008 .1.2.4")) {
	657	// for U pdates onl y, do not decompress already c ompressed DICOM Obje cts
	658	outputTS =inputTS;
	659	}
	660	}
	661	Dico mSessionSe ttings ss = new Dico mSessionSe ttings();
	662	Byte ArrayOutpu tStream bo s = new By teArrayOut putStream( );
	663	Dico mStreamWri ter writer = new Dic omStreamWr iter( bos, ss );
	664	Dico mFileOutpu t dfo = ne w DicomFil eOutput(
	665	writer,
	666	outputTS,
	667	true, true , ss );
	668	dfo. open();
	669	dfo. writeDataS et( this.d ataSet );
	670	data = bos.toB yteArray() ;
	671	bos. flush();
	672	// d fo.close() ;
	673	retu rn (data);
	674	}
	675	ca tch(DCSExc eption dcs e){
	676	return d ata;
	677	}
	678	ca tch(IOExce ption ioe) {
	679	return d ata;
	680	}
	681	}
	682
	683
	684	/*
	685	* (no n-Javadoc)
	686	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#c reatePatie ntQueryReq uestParame ters()
	687	*/
	688	public DicomRequ estParamet ers create PatientQue ryRequestP arameters( )
	689	th rows Illeg alQueryDat aException // -- fro m getreque stFromData Set
	690	{
	691	// R eturn the the query request fr om the DCF DicomData Set in non -DICOM for mat
	692	if ( this.servi ceMappingS et == null ){
	693	this.s erviceMapp ingSet = n ew HashSet <DicomMap> ();
	694	}
	695	else {
	696	this.s erviceMapp ingSet.cle ar();
	697	}
	698
	699	Hash Set<DicomM ap> tempMa ppingSet = getFindPr opertyMapp ingSet();
	700	Iter ator<Dicom Map> iter = tempMapp ingSet.ite rator();
	701	whil e (iter.ha sNext()){
	702	DicomM ap mapping = iter.ne xt();
	703	try{
	704	if(this. dataSet.co ntainsElem ent(new At tributeTag (mapping.g etTag()))) {
	705	this.servi ceMappingS et.add(map ping);
	706	}
	707	}
	708	catch( DCSExcepti on dcsX){
	709	//do not hing
	710	}
	711	}
	712
	713	this .serviceRe questParam eters = Di comToBusin essObjectT ranslator. getRequest FromDataSe t(
	714	this,
	715	this.ser viceMappin gSet);
	716	retu rn this.se rviceReque stParamete rs;
	717	}
	718
	719	/*
	720	* (non-Java doc)
	721	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#createS tudyQueryR equestPara meters()
	722	* /
	723	pu blic Dicom RequestPar ameters cr eateStudyQ ueryReques tParameter s()
	724	throws IllegalQu eryDataExc eption
	725	{
	726	// R eturn the query requ est from t he DCF Dic omDataSet in non-DIC OM format
	727	if ( this.servi ceMappingS et == null ){
	728	this.s erviceMapp ingSet = n ew HashSet <DicomMap> ();
	729	}
	730	else {
	731	this.s erviceMapp ingSet.cle ar();
	732	}
	733
	734	Hash Set<DicomM ap> tempMa ppingSet = getFindPr opertyMapp ingSet();
	735	Iter ator<Dicom Map> iter = tempMapp ingSet.ite rator();
	736	whil e (iter.ha sNext()){
	737	DicomM ap mapping = iter.ne xt();
	738	try{
	739	if(this. dataSet.co ntainsElem ent(new At tributeTag (mapping.g etTag()))) {
	740	this.servi ceMappingS et.add(map ping);
	741	}
	742	}
	743	catch( DCSExcepti on dcsX){
	744	//do not hing
	745	}
	746	}
	747
	748	this .serviceRe questParam eters = Di comToBusin essObjectT ranslator. getRequest FromDataSe t(
	749	this,
	750	this.ser viceMappin gSet);
	751	retu rn this.se rviceReque stParamete rs;
	752	}
	753
	754	/*
	755	* (non-Java doc)
	756	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#createM oveRequest Parameters ()
	757	* /
	758	pu blic Dicom RequestPar ameters cr eateMoveRe questParam eters()
	759	th rows Illeg alQueryDat aException // -- fro m getreque stFromData Set
	760	{
	761	// R eturn the Move reque st from th e DCF Dico mDataSet i n non-DICO M format ( feedable t o persiste nce)
	762	this .serviceMa ppingSet = getMovePr opertyMapp ingSet();
	763
	764	this .serviceRe questParam eters = Di comToBusin essObjectT ranslator. getRequest FromDataSe t(
	765	this,
	766	this.servi ceMappingS et);
	767	retu rn this.se rviceReque stParamete rs;
	768	}
	769
	770	/*
	771	* (non-Java doc)
	772	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getPart ialDicomCo rrectInfo( )
	773	* /
	774	pu blic Dicom CorrectInf o getParti alDicomCor rectInfo() {
	775
	776	St ring patie ntName = n ull;
	777	St ring nonDC MPatientNa me = null;
	778	St ring patie ntID = nul l;
	779	St ring acces sionNumber = null;
	780	St ring caseN umber = nu ll;
	781	// String ser viceType = null;
	782	St ring study InstanceUI D = null;
	783	St ring sopIn stanceUID = null;
	784
	785	tr y{
	786	patientN ame = this .dataSet.g etElementS tringValue (DCM.E_PAT IENTS_NAME );
	787	if(patie ntName != null){
	788	pati entName = patientNam e.trim();
	789	nonD CMPatientN ame = pati entName.to String();
	790	}
	791	}
	792	ca tch(DCSExc eption dcs X){
	793	logger.w arn(dcsX.g etMessage( ));
	794	logger .warn(this .getClass( ).getName( )+": Could not retri eve Patien t Name Dic om Element ");
	795	}
	796	tr y{
	797	patientI D = this.d ataSet.get ElementStr ingValue(D CM.E_PATIE NT_ID);
	798	if(patie ntID != nu ll){
	799	pati entID = pa tientID.tr im();
	800	}
	801	}
	802	ca tch(DCSExc eption dcs X){
	803	logger.w arn(dcsX.g etMessage( ));
	804	logger .warn(this .getClass( ).getName( )+": Could not retri eve Patien t ID Dicom Element") ;
	805	}
	806	tr y{
	807	accessio nNumber = this.dataS et.getElem entStringV alue(DCM.E _ACCESSION _NUMBER);
	808	if(acces sionNumber != null){
	809	acce ssionNumbe r = access ionNumber. trim();
	810	case Number = a ccessionNu mber;
	811	}
	812	}
	813	ca tch(DCSExc eption dcs X){
	814	logger.w arn(dcsX.g etMessage( ));
	815	logger .warn(this .getClass( ).getName( )+": Could not retri eve Access ion Number Dicom Ele ment");
	816	}
	817	tr y{
	818	studyIns tanceUID = this.data Set.getEle mentString Value(DCM. E_STUDY_IN STANCE_UID );
	819	if(study InstanceUI D != null) {
	820	stud yInstanceU ID = study InstanceUI D.trim();
	821	}
	822	}
	823	ca tch(DCSExc eption dcs X){
	824	logger.w arn(dcsX.g etMessage( ));
	825	logger .warn(this .getClass( ).getName( )+": Could not retri eve Study Instance U ID Dicom E lement");
	826	}
	827	tr y{
	828	sopInsta nceUID = t his.dataSe t.getEleme ntStringVa lue(DCM.E_ SOPINSTANC E_UID);
	829	if(sopIn stanceUID != null){
	830	sopI nstanceUID = sopInst anceUID.tr im();
	831	}
	832	}
	833	ca tch(DCSExc eption dcs X){
	834	logger.w arn(dcsX.g etMessage( ));
	835	logger .warn(this .getClass( ).getName( )+": Could not retri eve SOP In stance UID Dicom Ele ment");
	836	}
	837
	838	Dico mCorrectIn fo dicomCo rrectInfo = new Dico mCorrectIn fo(patient ID, patien tName, non DCMPatient Name, case Number, ac cessionNum ber,
	839	sopIns tanceUID, studyInsta nceUID);
	840	retu rn dicomCo rrectInfo;
	841	}
	842
	843
	844	/*
	845	* (non-Java doc)
	846	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#validat eIOD()
	847	* /
	848	// @Override
	849	pu blic IIODV iolationLi st validat eIOD() thr ows Valida teIODExcep tion, Unkn ownSOPClas sException {
	850
	851	IODV iolationLi stImpl vio lationList = null;
	852	try{
	853	viol ationList = DicomIns tanceValid ator.getIn stance().v alidate(th is.dataSet );
	854	}
	855	ca tch(Parser Configurat ionExcepti on pcX){
	856	logg er.error(t his.getCla ss().getNa me()+": Pa rser Confi guration E xception: /n"+pcX.ge tMessage() );
	857	thro w new Vali dateIODExc eption("IO D Validati on Parser problem.") ;
	858	}
	859	ca tch(Transf ormerExcep tion tX){
	860	logg er.error(t his.getCla ss().getNa me()+": Tr ansformer Exception: /n"+tX.ge tMessage() );
	861	thro w new Vali dateIODExc eption("IO D Validati on Transfo rmer probl em.");
	862	}
	863	ca tch(Unsupp ortedEncod ingExcepti on ueX){
	864	logg er.error(t his.getCla ss().getNa me()+": Un supported Encoding E xception: /n"+ueX.ge tMessage() );
	865	thro w new Vali dateIODExc eption("IO D Validati on Unsuppo rted Encod ing proble m.");
	866	}
	867	//Ad ded Throwa ble in cas e of memor y heap spa ce error.
	868	catc h(Throwabl e T){
	869	logg er.error(t his.getCla ss().getNa me()+": Er ror or Exc eption: /n "+T.getMes sage());
	870	thro w new Vali dateIODExc eption("IO D Validati on general problem." );
	871	}
	872	re turn (IIOD ViolationL ist)violat ionList;
	873	}
	874
	875	/*
	876	* (non-Java doc)
	877	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#validat eVR()
	878	* /
	879	public void vali dateVR()
	880	th rows Valid ateVRExcep tion{
	881
	882	VR Validator validator = VRValida tor.instan ce();
	883	Va lidationEr rorList li st = valid ator.valid ateDataSet (this.data Set);
	884	if (list.hasE rrors()){
	885	int errorCount = list.ge tErrorCoun t();
	886	Vect or<Validat ionError> vectorList = list.ge tErrorVect or();
	887	Iter ator<Valid ationError > iter = v ectorList. iterator() ;
	888	whil e(iter.has Next()){
	889	Valida tionError error = (V alidationE rror)iter. next();
	890	DicomE lement ele ment = err or.getElem ent();
	891	if(ele ment.lengt h() == 0){
	892	errorCou nt--;
	893	}
	894	}
	895	if(e rrorCount > 0){
	896	logger .error("Th e DICOMDat aSet has t he followi ng VR erro rs. ");
	897	logger .error(lis t.toString ());
	898	throw new Valida teVRExcept ion();
	899	}
	900	}
	901	}
	902
	903	/* (non-Java doc)
	904	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getPa tientRef()
	905	* /
	906	pu blic Patie ntRef getP atientRef( ) {
	907	Stri ng creatin gEntity = ""; // loc al siteID, stationID or divisi onID -- th e creating (DB) enti ty of the ID
	908	if ( config != null)
	909	creati ngEntity = config.ge tSiteId(); // this i s the Stat ion# not t he IEN in institutio n file!)
	910
	911	retu rn new Pat ientRef("" , "V", cre atingEntit y, "D"); / / DFN valu e will be resolved a fter Patie nt Lookup
	912	}
	913
	914	/* (non-Java doc)
	915	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getPr ocedureRef ()
	916	* /
	917	pu blic Proce dureRef ge tProcedure Ref(Instru mentConfig instrumen t) {
	918	Proc edureRef p rocRef = n ew Procedu reRef (nul l, null, n ull, null, null, nul l);
	919	Stri ng accessi onNumber = getString ValueFromE lement("00 08,0050", ""); // if no ACC# w e don't ad d to new D B anyway, But DICOM Correct
	920	proc Ref.setDic omAccessio nNumber(ac cessionNum ber); // t his is the in-proces sing ACC# from heade r! not fro m ProcRef domain!
	921	proc Ref.setPro cedureID(a ccessionNu mber);
	922	proc Ref.setAss igningAuth ority("V") ;
	923	Stri ng creatin gEntity = ""; // loc al siteID, stationID or divisi onID -- th e creating (DB) enti ty of the ID
	924	if ( config != null)
	925	creati ngEntity = config.ge tSiteId(); // this i s the Stat ion# not t he IEN in institutio n file!)
	926	proc Ref.setCre atingEntit y(creating Entity);
	927
	928	if(i nstrument. isConsultI nstrument( ))
	929	{
	930	proc Ref.setPac kageIX("CO NS");
	931	}
	932	el se
	933	{
	934	// T ODO: Check for other entities based on A CC# format ?
	935	proc Ref.setPac kageIX(ins trument.ge tService() );
	936	}
	937
	938	proc Ref.setPro cedureIDTy pe(instrum ent.getSer vice());
	939
	940	Stri ng stdTime = getStri ngValueFro mElement(" 0040,2005" , ""); // Imaging Se rvice Requ est Issue Time
	941	if ( !stdTime.i sEmpty())
	942	stdTim e = "." + stdTime;
	943	Stri ng procDT = (getStri ngValueFro mElement(" 0040,2004" , "") + st dTime); // ISR Issue Date&Time
	944	if ( procDT.isE mpty()) {
	945	stdTim e = getStr ingValueFr omElement( "0008,0030 ", ""); // study tim e
	946	if (!s tdTime.isE mpty())
	947	stdTime = "." + st dTime;
	948	procDT = (getStr ingValueFr omElement( "0008,0020 ", "") + s tdTime); / / study Da te&Time
	949
	950	}
	951	proc Ref.setPro cedureExam DateTime(p rocDT);
	952
	953	retu rn procRef ;
	954	}
	955
	956	/* (non-Java doc)
	957	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSt udy()
	958	* /
	959	pu blic Study getStudy( ) {
	960	// R eturn the Study usin g the data from the DCF DicomD ataSet
	961	Stri ng stdDate = getStri ngValueFro mElement(" 0008,0020" , "");
	962	Stri ng stdTime = getStri ngValueFro mElement(" 0008,0030" , "");
	963	Stri ng stdTime WithSepara tor = stdT ime;
	964	if ( !stdTimeWi thSeparato r.isEmpty( ))
	965	stdTim eWithSepar ator = "." + stdTime WithSepara tor;
	966
	967	Stud y study = new Study(
	968	getStrin gValueFrom Element("0 020,000d", ""), // s tudyIUID - - needs op tional Fil l-in after Study UID Check!
	969	"", // o riginalStu dyIUID,-- needs opti onal Fill- in after S tudy UID C heck!
	970	getStrin gValueFrom Element("0 020,0010", ""), // s tudyID
	971	getStrin gValueFrom Element("0 008,1030", ""), // d escription
	972	getStrin gValueFrom Element("0 008,0061", ""), // m odalitiesI nStudy
	973	(getStri ngValueFro mElement(" 0008,0020" , "") + st dTimeWithS eparator), // studyD ateTime
	974	getStrin gValueFrom Element("0 040,1002", ""), // r easonForSt udy
	975	"A", // Acq. in pr ogress ("A "), partia lly comple te ("P") o r complete d ("C")
	976	"V", // originIX = 'V'A / 'D 'OD / 'F'E E / 'O'the r
	977	getStrin gValueFrom Element("0 040,1003", "R"), // priority ‘ S'TAT, ‘R' OUTINE, 'L 'OW or 'H' IGH
	978	getStrin gValueFrom Element("0 008,0050", "") // Ac cession Nu mber for P ete
	979	);
	980	stud y.setStudy Date(stdDa te);
	981	stud y.setStudy Time(stdTi me);
	982	stud y.setRefer ringPhysic ian(DicomU tils.refor matDicomNa me(getStri ngValueFro mElement(" 0008,0090" , "")));
	983
	984	retu rn study;
	985	}
	986	/* (non-Java doc)
	987	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSe ries()
	988	* /
	989	pu blic Serie s getSerie s(DicomAE dicomAE,In strumentCo nfig instr ument) {
	990	// R eturn the Series usi ng the dat a from the DCF Dicom DataSet
	991	Stri ng serTime = getStri ngValueFro mElement(" 0008,0031" , "");
	992	Stri ng remoteA ETitle = ( dicomAE != null) ? d icomAE.get RemoteAETi tle() : "" ;
	993	Stri ng localAE Title = (d icomAE != null) ? di comAE.getL ocalAETitl e() : "";
	994	Stri ng acqLoca tion = (in strument ! = null) ? instrument .getSiteId () : Dicom ServerConf iguration. getConfigu ration().g etSiteId() ;
	995	if ( !serTime.i sEmpty())
	996	serTim e = "." + serTime;
	997	Seri es series = new Seri es(
	998	getStrin gValueFrom Element("0 020,000e", ""), // s eriesIUID -- needs o ptional Fi ll-in afte r Series U ID Check!
	999	"", // o riginalSer iesIUID, - - needs op tional Fil l-in after Series UI D Check!
	1000	getStrin gValueFrom Element("0 020,0011", ""), // s erNum
	1001	getStrin gValueFrom Element("0 008,103e", ""), // s eries desc ription
	1002	getStrin gValueFrom Element("0 008,0060", ""), // m odality
	1003	getStrin gValueFrom Element("0 008,0015", ""), // b odypart
	1004	//The pu rpose of t his is to assign the Site Numb er of wher e the DICO M object c ame from. This is b ased on th e
	1005	// Instr umentConfi g object. We added it to over ride the H DIG's Site Number.
	1006	acqLocat ion, // ac qSite
	1007	(getStri ngValueFro mElement(" 0008,0021" , "") + se rTime), // series Da te.Time
	1008	getStrin gValueFrom Element("0 008,0070", ""), // s eries Crea tor -- Man ufacturer
	1009	getStrin gValueFrom Element("0 008,1090", ""), // s eries Crea ter Device Model -- Manuf. Mod el
	1010	getStrin gValueFrom Element("0 020,0052", ""), // F rame Of Re ference UI D
	1011	getStrin gValueFrom Element("0 020,0060", ""), // l aterality
	1012	getStrin gValueFrom Element("0 018,5100", ""), // S patial Pos ition
	1013	remoteAE Title,
	1014	localAET itle,
	1015	"1", // "DICOM Sto rage", vIA cqEntryPoi nt
	1016	"0 ", // IODV iolationDe tected - n one
	1017	"C LIN",
	1018	"" , // proc EventIX
	1019	"" , // spec SubSpecIX
	1020	"" ); // tiuN oteReferen ce
	1021
	1022	// N ew fields for DICOM Importer
	1023	seri es.setFaci lity(getSt ringValueF romElement ("0008,008 0", ""));
	1024	seri es.setInst itutionAdd ress(getSt ringValueF romElement ("0008,008 1", ""));
	1025
	1026	retu rn series;
	1027	}
	1028
	1029	/* (non-Java doc)
	1030	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getSO PInstance( )
	1031	* /
	1032	pu blic SOPIn stance get SOPInstanc e() {
	1033	// R eturn the Instance u sing the d ata in the DCF Dicom DataSet
	1034	Stri ng sopTime = getStri ngValueFro mElement(" 0008,0033" , "");
	1035	if ( !sopTime.i sEmpty())
	1036	sopTim e = "." + sopTime;
	1037	SOPI nstance so pInstance = new SOPI nstance(
	1038	getStr ingValueFr omElement( "0008,0018 ", ""), // SOPInstan ceUID -- n eeds optio nal Fill-i n after SO P UID Chec k!
	1039	"", // originalS OPInstance UID -- nee ds optiona l Fill-in after SOP UID Check!
	1040	getStr ingValueFr omElement( "0008,0016 ", ""), // SOPClassU ID
	1041	"IMAGE ", // type IX by natu ral key.
	1042	"", // image des cription
	1043	(getSt ringValueF romElement ("0008,002 3", "") + sopTime), // acqDate Time
	1044	getStr ingValueFr omElement( "0020,0012 ", ""), // acqNumber
	1045	getStr ingValueFr omElement( "0020,0013 ", ""), // instanceN umber
	1046	"", // is Key im age? - 1 o r 0
	1047	"", // image Not OK? - 1 o r 0
	1048	getStr ingValueFr omElement( "0018,0010 ", ""), // contrastB olusAgent
	1049	getStr ingValueFr omElement( "0020,0032 ", ""), // imagePosi tion
	1050	getStr ingValueFr omElement( "0020,0037 ", ""), // imageOrie ntation
	1051	getStr ingValueFr omElement( "0020,0020 ", ""), // patientOr ientation
	1052	getStr ingValueFr omElement( "0028,0004 ", ""), // photometr icInterpta tion
	1053	getStr ingValueFr omElement( "0028,0008 ", ""), // numberOfF rames
	1054	getStr ingValueFr omElement( "0028,0010 ", ""), // rows
	1055	getStr ingValueFr omElement( "0028,0011 ", ""), // columns
	1056	getStr ingValueFr omElement( "0028,0030 ", ""), // pixelSpac ing
	1057	getStr ingValueFr omElement( "0028,0002 ", ""), // samplesPe rPixel
	1058	getStr ingValueFr omElement( "0028,0100 ", ""), // bitsAlloc ated
	1059	getStr ingValueFr omElement( "0028,0101 ", ""), // bitsStore d
	1060	getStr ingValueFr omElement( "0028,0102 ", ""), // highBit
	1061	getStr ingValueFr omElement( "0028,0103 ", ""), // pixelRepr esentation
	1062	getStr ingValueFr omElement( "0028,1052 ", ""), // rescaleIn tercept
	1063	getStr ingValueFr omElement( "0028,1053 ", ""), // rescaleSl ope
	1064	getStr ingValueFr omElement( "0028,1050 ", ""), // windowCen ter
	1065	getStr ingValueFr omElement( "0028,1051 ", ""), // windowWid th
	1066	getStr ingValueFr omElement( "0018,1004 ", ""), // plateID
	1067	getStr ingValueFr omElement( "0018,0050 ", ""), // sliceThic kness
	1068	getStr ingValueFr omElement( "0018,1100 ", ""), // reconstru ctionDiame ter
	1069	getStr ingValueFr omElement( "0018,0020 ", ""), // scanningS equence
	1070	getStr ingValueFr omElement( "0018,0021 ", ""), // scanningV ariant
	1071	getStr ingValueFr omElement( "0018,0023 ", ""), // mrAcqType
	1072	getStr ingValueFr omElement( "0040,0556 ", ""), // acqContex tDescripti on
	1073	getStr ingValueFr omElement( "0018,0080 ", ""), // repetitio nTime
	1074	getStr ingValueFr omElement( "0018,0081 ", ""), // echoTime
	1075	(getSt ringValueF romElement ("0018,115 0", "") + "\\" + get StringValu eFromEleme nt("0018,1 155", "")) , // refer encedSOPIn stances
	1076	"0018, 1150\\0018 ,1155",
	1077	"", // Microscop icObjectiv e
	1078	"", // lab Slice Id
	1079	"", // his tological Stain n/a for RAD st udies
	1080	getStr ingValueFr omElement( "0020,0062 ", "") // imageLater ality (L, R, B or U)
	1081	);
	1082
	1083	// N ew fields for DICOM Importer
	1084	sopI nstance.se tTransferS yntaxUid(g etStringVa lueFromEle ment("0004 ,1512", "" ));
	1085	retu rn sopInst ance;
	1086	}
	1087
	1088	/* (non-Java doc)
	1089	* @see gov. va.med.ima ging.dicom .interface s.DicomDat aSet#getIn stanceFile ()
	1090	* /
	1091	pu blic Insta nceFile ge tInstanceF ile() {
	1092	Inst anceFile i nstanceFil e = new In stanceFile (
	1093	"", // A rtifactTok en
	1094	"0", // isConfiden tial
	1095	"1", // isOriginal
	1096	"", // d eleteDateT ime in the format YY YMMDD.HHMM SS
	1097	"", // d eletedBy
	1098	"", // d eleteReaso n
	1099	getStrin gValueFrom Element("0 008,0008", ""), // i mageType
	1100	getStrin gValueFrom Element("0 008,2111", ""), // d erivationD esc
	1101	getStrin gValueFrom Element("0 008,2112", ""), // c ompression Ratio
	1102	getStrin gValueFrom Element("0 008,2114", ""), // compressio nMethod
	1103	0);
	1104	retu rn instanc eFile;
	1105	}
	1106
	1107	/*
	1108	* (non-Java doc)
	1109	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getSour ceAET()
	1110	* /
	1111	pu blic Strin g getSourc eAET() {
	1112	retu rn sourceA ET;
	1113	}
	1114
	1115	/*
	1116	* (non-Java doc)
	1117	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setSour ceAET(java .lang.Stri ng)
	1118	* /
	1119	pu blic void setSourceA ET(String sourceAET) {
	1120	if(s ourceAET ! = null){
	1121	source AET = sour ceAET.trim ();
	1122	}
	1123	this .sourceAET = sourceA ET;
	1124	}
	1125
	1126	/*
	1127	* (non-Java doc)
	1128	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getRece ivedTransf erSyntax()
	1129	* /
	1130	pu blic Strin g getRecei vedTransfe rSyntax() {
	1131	retu rn receive dTransferS yntax;
	1132	}
	1133
	1134	/*
	1135	* (non-Java doc)
	1136	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setRece ivedTransf erSyntax(j ava.lang.S tring)
	1137	* /
	1138	pu blic void setReceive dTransferS yntax(Stri ng receive dTransferS yntax) {
	1139	if(r eceivedTra nsferSynta x != null) {
	1140	receiv edTransfer Syntax = r eceivedTra nsferSynta x.trim();
	1141	}
	1142	this .receivedT ransferSyn tax = rece ivedTransf erSyntax;
	1143	}
	1144
	1145	// CODECR #IM AG00000440 - SSN For mat issue.
	1146	/*
	1147	*
	1148	* /
	1149	public void chan geDataPres entation() {
	1150
	1151	if(D icomServer Configurat ion.getCon figuration ().isForma tPatientID withDashes ()){
	1152	try{
	1153	if(dataS et.contain sElement(D CM.E_PATIE NT_ID)){
	1154	String pat ientID = d ataSet.get ElementStr ingValue(D CM.E_PATIE NT_ID, "") ;
	1155	if(!patien tID.equals ("")){
	1156	St ring out = StringUti l.formatPa tientIDWit hDashes(pa tientID);
	1157	da taSet.inse rt(DCM.E_P ATIENT_ID, out);
	1158	}
	1159	}
	1160	}
	1161	catch( DCSExcepti on dX){
	1162	logger.e rror("Fail ed to re-f ormat the Patient ID .");
	1163	}
	1164	}
	1165	}
	1166
	1167	/*
	1168	* (no n-Javadoc)
	1169	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etQueryRet rieveLevel ()
	1170	*/
	1171	public String ge tQueryRetr ieveLevel( ){
	1172	St ring qrLev el = this. dataSet.ge tElementSt ringValue( DCM.E_QUE RYRETRIEVE _LEVEL, "" );
	1173	if (qrLevel ! = null){
	1174	qrLe vel = qrLe vel.trim() ;
	1175	}
	1176	re turn qrLev el;
	1177	}
	1178
	1179	/*
	1180	* (non-Java doc)
	1181	* @se e gov.va.m ed.imaging .dicom.com mon.interf aces.IDico mDataSet#g etPatientS tudyInfo(g ov.va.med. imaging.ex change.bus iness.dico m.Instrume ntConfig)
	1182	*/
	1183	@O verride
	1184	pu blic Patie ntStudyInf o getPatie ntStudyInf o(Instrume ntConfig i nstrument) throws Di comExcepti on {
	1185
	1186	Pati entStudyIn fo patient StudyInfo = new Pati entStudyIn fo();
	1187
	1188	// E xtract val ues from D ICOM data set
	1189	Stri ng accessi onNumber = getString ValueFromE lement("00 08,0050", "");
	1190
	1191	Stri ng patient Name = get StringValu eFromEleme nt("0010,0 010", "");
	1192	Stri ng patient Id = getSt ringValueF romElement ("0010,002 0", "");
	1193	Stri ng patient BirthDate = getStrin gValueFrom Element("0 010,0030", "");
	1194	Stri ng patient Sex = getS tringValue FromElemen t("0010,00 40", "");
	1195	Stri ng patient ICN = "";
	1196
	1197	// S et propert ies on pat ientStudyI nfo object
	1198	pati entStudyIn fo.setStud yAccession Number(acc essionNumb er);
	1199	pati entStudyIn fo.setStud yImagingSe rvice(inst rument.get Service()) ;
	1200	pati entStudyIn fo.setPati entName(pa tientName) ;
	1201	pati entStudyIn fo.setPati entID(pati entId);
	1202	pati entStudyIn fo.setPati entBirthDa te(patient BirthDate) ;
	1203	pati entStudyIn fo.setPati entSex(pat ientSex);
	1204	pati entStudyIn fo.setPati entICN(pat ientICN);
	1205
	1206	retu rn patient StudyInfo;
	1207	}
	1208
	1209	/* *
	1210	* @return t he name
	1211	* /
	1212	pu blic Strin g getName( ) {
	1213	retu rn name;
	1214	}
	1215
	1216	/* *
	1217	* @param na me the nam e to set
	1218	* /
	1219	pu blic void setName(St ring name) {
	1220	this .name = na me;
	1221	}
	1222
	1223	/* (non-Java doc)
	1224	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getAffe ctedSOPCla ss()
	1225	* /
	1226	@O verride
	1227	pu blic Strin g getAffec tedSOPClas s() {
	1228	if (this.affe ctSOPClass == null){
	1229	try{
	1230	this.affec tSOPClass = this.dat aSet.getEl ementStrin gValue(DCM .E_AFFECTE D_SOPCLASS _UID);
	1231	}
	1232	catc h(DCSExcep tion dcsX) {
	1233	return nul l;
	1234	}
	1235	}
	1236	re turn this. affectSOPC lass;
	1237	}
	1238
	1239	/* (non-Java doc)
	1240	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setAffe ctedSOPCla ss(java.la ng.String)
	1241	* /
	1242	@O verride
	1243	pu blic void setAffecte dSOPClass( String sop Class) {
	1244	this .affectSOP Class = so pClass;
	1245	}
	1246
	1247	/* (no n-Javadoc)
	1248	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#setServ iceType(ja va.lang.St ring)
	1249	* /
	1250	@O verride
	1251	pu blic void setAETDefa ultService Type(Strin g type) {
	1252	this .aETDefaul tServiceTy pe = type;
	1253
	1254	}
	1255
	1256	/* (non-Java doc)
	1257	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#getServ iceType()
	1258	* /
	1259	@O verride
	1260	pu blic Strin g getAETDe faultServi ceType() {
	1261	retu rn this.aE TDefaultSe rviceType;
	1262	}
	1263
	1264	/*
	1265	* (non-Java doc)
	1266	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#insertT oOriginalA ttributeSe quence(jav a.lang.Str ing, java. lang.Strin g, java.la ng.String)
	1267	* /
	1268	pu blic void insertToOr iginalAttr ibuteSeque nce(String tag, Stri ng tagValu e, String context) {
	1269	try {
	1270	insert DicomEleme nt(origina lAttribute SequenceTa g, tag, ta gValue);
	1271	} ca tch (Dicom Exception de) {
	1272	logg er.error(" Inserting (" + tag + ") with U ID " + tag Value + " to Origina l Attribut e sequence Failed " + context) ;
	1273	}
	1274	}
	1275
	1276	/*
	1277	* (non-Java doc)
	1278	* @see gov. va.med.ima ging.dicom .common.in terfaces.I DicomDataS et#insertT oOriginalA ttributeSe quence(jav a.lang.Str ing, java. lang.Strin g)
	1279	* /
	1280	pu blic void insertToOr iginalAttr ibuteSeque nce(String tag, Stri ng context ) {
	1281	try {
	1282	insert DicomEleme nt(origina lAttribute SequenceTa g, tag, ge tStringVal ueFromElem ent(tag, n ull));
	1283	} ca tch (Dicom Exception de) {
	1284	logg er.error(" Inserting (" + tag + ") to Ori ginal Attr ibute sequ ence Faile d " + cont ext);
	1285	}
	1286	}
	1287
	1288	pu blic Strin g getTrans actionUID( ){
	1289	if (this.tran sactionUID == null){
	1290	try{
	1291	this.trans actionUID = this.dat aSet.getEl ementStrin gValue(DCM .E_TRANSAC TION_UID);
	1292	}
	1293	catc h(DCSExcep tion dcsX) {
	1294	return nul l;
	1295	}
	1296	}
	1297	re turn this. transactio nUID;
	1298	}
	1299
	1300	/*
	1301	* this meth od inserts DICOM SOP Class/Ins tance elem ent pairs into a sto rage commi tment stru cture.
	1302	* This sequ ence is us ed to keep track of Storage Co mmitment r equests un til a resp onse is de livered to the sende r.
	1303	* /
	1304	pu blic List< StorageCom mitElement > getRefSO PUIDList() {
	1305	List <StorageCo mmitElemen t> sCEs= n ew ArrayLi st<Storage CommitElem ent>();
	1306	sCEs .clear();
	1307
	1308	int i=0;
	1309	try {
	1310	DicomS QElement s q_e = (Dic omSQElemen t) this.da taSet.find Element(DC M.E_REFERE NCED_SOP_S EQUENCE);
	1311	if (sq _e != null ) {
	1312	// extra ct element s from seq uence data set
	1313	for (i=0 ; ; i++) { // took ( back) out correct lo oking code : "i<sq_e. length()" -- did not fill list !!!
	1314	DicomDataS et sq_ds = sq_e.SQ(i ); // hand le sequenc e elements
	1315	StorageCom mitElement sCE = new StorageCo mmitElemen t();
	1316	sCE.setSop ClassUid(s q_ds.getEl ementStrin gValue(DCM .E_REFEREN CED_SOPCLA SS_UID));
	1317	sCE.setSOP InstanceUI D(sq_ds.ge tElementSt ringValue( DCM.E_REFE RENCED_SOP INSTANCE_U ID));
	1318	sCEs.add(s CE);
	1319	}
	1320	}
	1321	}
	1322	catc h (DCSExce ption de) {
	1323	if (i==0 )
	1324	logger.err or("Error extracting SOP refer ences from Storage C ommit Requ est");
	1325	}
	1326
	1327	retu rn sCEs;
	1328	}
	1329
	1330	/* *
	1331	* ret urns the D ICOM Study Root, Stu dy level C -FIND DICO M to java mapping se t. (to be used
	1332	* for Query Req uest DataS et transla tion.)
	1333	* The mapping s et is hard coded for legacy but queried f rom persis tence mapp ing table for RE
	1334	* @re turn HashS et contain ing the ma pping set: ("gggg,ee ee", value ) for lega cy, (field Name, valu e) otherwi se
	1335	*/
	1336	privat e HashSet< DicomMap> getHISProp ertyMappin gSet()
	1337	{
	1338	// C reate the HashSet
	1339	Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>();
	1340
	1341	// feed s tatic tabl e for lega cy(could b e in M per sistence!! !!)
	1342	hash Set.add(ne w MockDico mMap("0008 ,0018", nu ll, "HISUp date", "SO PInstanceU ID", 1));
	1343	hash Set.add(ne w MockDico mMap("0008 ,0020", nu ll, "HISUp date", "St udyDate", 1));
	1344	hash Set.add(ne w MockDico mMap("0008 ,0050", nu ll, "HISUp date", "Ac cessionNum ber", 1));
	1345	ha shSet.add( new MockDi comMap("00 08,0090", null, "HIS Update", " ReferringP hysiciansN ame", 1));
	1346	ha shSet.add( new MockDi comMap("00 08,1030", null, "HIS Update", " Procedure" , 1));
	1347	ha shSet.add( new MockDi comMap("00 08,1032", "0008,0100 ", "HISUpd ate", "CPT Code", 1)) ;
	1348	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0102", "HISUpdat e", "CodeS chemeDesig nator", 1) );
	1349	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0104", "HISUpdat e", "CodeM eaning", 1 ));
	1350	ha shSet.add( new MockDi comMap("00 08,1050", null, "HIS Update", " Performing Physician" , 1));
	1351
	1352	ha shSet.add( new MockDi comMap("00 10,0010", null, "HIS Update", " PatientNam e", 1));
	1353	hash Set.add(ne w MockDico mMap("0010 ,0020", nu ll, "HISUp date", "Pa tientId", 1));
	1354	ha shSet.add( new MockDi comMap("00 10,0030", null, "HIS Update", " PatientBir thDate", 1 ));
	1355	ha shSet.add( new MockDi comMap("00 10,0032", null, "HIS Update", " PatientBir thTime", 1 ));
	1356	ha shSet.add( new MockDi comMap("00 10,0040", null, "HIS Update", " PatientSex ", 1));
	1357	ha shSet.add( new MockDi comMap("00 10,1000", null, "HIS Update", " OtherPatie ntIDs", 1) );
	1358	ha shSet.add( new MockDi comMap("00 10,1040", null, "HIS Update", " PatientAdd ress", 1)) ;
	1359	ha shSet.add( new MockDi comMap("00 10,2000", null, "HIS Update", " MedicalAle rts", 1));
	1360	ha shSet.add( new MockDi comMap("00 10,2160", null, "HIS Update", " PatientRac e", 1));
	1361
	1362	hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "HISUp date", "St udyInstanc eUID", 1)) ;
	1363	ha shSet.add( new MockDi comMap("00 20,000E", null, "HIS Update", " SeriesInst anceUID", 1));
	1364
	1365	ha shSet.add( new MockDi comMap("00 32,1032", null, "HIS Update", " Requesting PhysicianN ame", 1));
	1366	hash Set.add(ne w MockDico mMap("0032 ,1033", nu ll, "HISUp date", "Re questingSe rvice", 1) );
	1367	ha shSet.add( new MockDi comMap("00 32,1060", null, "HIS Update", " RequestedP rocedureDe scription" , 1));
	1368	ha shSet.add( new MockDi comMap("00 32,1064", "0008,0100 ", "HISUpd ate", "CPT Code", 1)) ;
	1369	hash Set.add(ne w MockDico mMap("0032 ,1064", "0 008,0102", "HISUpdat e", "CodeS chemeDesig nator", 1) );
	1370	hash Set.add(ne w MockDico mMap("0032 ,1064", "0 008,0104", "HISUpdat e", "CodeM eaning", 1 ));
	1371
	1372	hash Set.add(ne w MockDico mMap("0038 ,0300", nu ll, "HISUp date", "Cu rrentPatie ntLocation ", 1));
	1373	hash Set.add(ne w MockDico mMap("0032 ,1020", nu ll, "HISUp date", "Sc heduled St udy Locati on", 1));
	1374
	1375	retu rn hashSet ;
	1376	}
	1377
	1378	/* *
	1379	* returns t he DICOM S tudy Root, Study lev el C-FIND DICOM to j ava mappin g set. (to be used
	1380	* for Query Request D ataSet tra nslation.)
	1381	* The mappi ng set is hardcoded for legacy but queri ed from pe rsistence mapping ta ble for RE
	1382	* @return H ashSet con taining th e mapping set: ("ggg g,eeee", v alue) for legacy, (f ieldName, value) oth erwise
	1383	* /
	1384	pr ivate Hash Set<DicomM ap> getFin dPropertyM appingSet( )
	1385	{
	1386	// C reate the HashSet
	1387	Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>();
	1388
	1389	// feed s tatic tabl e for Stud y Root Stu dy level q uery (coul d be in M persistenc e!!!!)
	1390	hash Set.add(ne w MockDico mMap("0008 ,0020", nu ll, "Query Request", "StudyDate ", 1)); // DA -> Str ing
	1391	hash Set.add(ne w MockDico mMap("0008 ,0030", nu ll, "Query Request", "StudyDate ", 1)); // TM -> Str ing(
	1392	hash Set.add(ne w MockDico mMap("0008 ,0050", nu ll, "Query Request", "Accession Number", 1 )); // SH -> String( 16)
	1393	ha shSet.add( new MockDi comMap("00 08,0052", null, "Que ryRequest" , "Level", 1)); // D A -> Strin g
	1394	ha shSet.add( new MockDi comMap("00 08,0061", null, "Que ryRequest" , "Modalit ies in Stu dy", 1)); // DA -> S tring
	1395	hash Set.add(ne w MockDico mMap("0010 ,0010", nu ll, "Query Request", "Name", 1) ); // PN - > String(6 4)
	1396	hash Set.add(ne w MockDico mMap("0010 ,0020", nu ll, "Query Request", "PatientId ", 1)); // LO -> Str ing(64)
	1397	hash Set.add(ne w MockDico mMap("0020 ,0010", nu ll, "Query Request", "StudyId", 1)); // S H -> Strin g(16)
	1398	hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "Query Request", "StudyInst anceUID", 1)); // UI -> String (64)
	1399	hash Set.add(ne w MockDico mMap("0008 ,0090", nu ll, "Query Request", "Referring PhysicianN ame", 1)); // PN -> String(64)
	1400	hash Set.add(ne w MockDico mMap("0008 ,1030", nu ll, "Query Request", "Descripti on", 1)); // LO -> S tring(64)
	1401	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0100", "QueryReq uest", "Me dicalSpeci altyProced ureCode", 1)); // SQ /SH -> Str ing(16)
	1402	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0102", "QueryReq uest", "Co deSchemeDe signator", 1)); // S Q/SH -> St ring(16)
	1403	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0103", "QueryReq uest", "Co deSchemeVe rsion", 1) ); // SQ/S H -> Strin g(16)
	1404	hash Set.add(ne w MockDico mMap("0008 ,1032", "0 008,0104", "QueryReq uest", "Co deMeaning" , 1)); // SQ/LO -> S tring(64)
	1405	hash Set.add(ne w MockDico mMap("0008 ,1060", nu ll, "Query Request", "ReadingPh ysician", 1)); // n PN -> 5S tring(64)
	1406	hash Set.add(ne w MockDico mMap("0010 ,0030", nu ll, "Query Request", "DateOfBir th", 1)); // DA -> S tring(15)
	1407	hash Set.add(ne w MockDico mMap("0010 ,0032", nu ll, "Query Request", "TimeOfBir th", 1)); // DA -> S tring(15)
	1408	hash Set.add(ne w MockDico mMap("0010 ,0040", nu ll, "Query Request", "Sex", 1)) ; // CS -> String(1)
	1409	hash Set.add(ne w MockDico mMap("0010 ,1000", nu ll, "Query Request", "OtherPati entIds", 1 )); // LO -> String( 64)
	1410	hash Set.add(ne w MockDico mMap("0010 ,1001", nu ll, "Query Request", "OtherPati entNames", 1)); // P N -> Strin g(64)
	1411	hash Set.add(ne w MockDico mMap("0010 ,1010", nu ll, "Query Request", "PatientAg e", 1)); / / AS -> St ring(4)
	1412	hash Set.add(ne w MockDico mMap("0010 ,2160", nu ll, "Query Request", "EthnicGro up", 1)); // SH -> S tring(16)
	1413	hash Set.add(ne w MockDico mMap("0010 ,2180", nu ll, "Query Request", "Occupatio n", 1)); / / SH -> St ring(16)
	1414	hash Set.add(ne w MockDico mMap("0010 ,21B0", nu ll, "Query Request", "adddition alPatientH istory", 1 )); // LT -> String( 10240)
	1415	hash Set.add(ne w MockDico mMap("0020 ,1206", nu ll, "Query Request", "NumberOfS tudySeries ", 1)); // IS -> Str ing(12)
	1416	hash Set.add(ne w MockDico mMap("0020 ,1208", nu ll, "Query Request", "NumberOfS tudyInstan ces", 1)); // IS -> String(12)
	1417	hash Set.add(ne w MockDico mMap("4008 ,010C", nu ll, "Query Request", "Interpret attionAuth or", 1)); // PN -> S tring(64)
	1418
	1419	retu rn hashSet ;
	1420	}
	1421
	1422	/* *
	1423	* returns t he DICOM S tudy Root, Study lev el C-MOVE DICOM to j ava mappin g set. (to be used
	1424	* for Move (Study) Da taSet tran slation.)
	1425	* The mappi ng set is hardcoded for legacy but queri ed from pe rsistence mapping ta ble for RE
	1426	* @return H ashSet con taining th e mapping set: ("ggg g,eeee", v alue) for legacy, (f ieldName, value) oth erwise
	1427	* /
	1428	pr ivate Hash Set<DicomM ap> getMov ePropertyM appingSet( )
	1429	{
	1430	// FUTURE Nee d to find out if thi s method e ven gets c alled. I do not thi nk so. If not,
	1431	// remove i t.
	1432
	1433	// C reate the HashSet
	1434	Hash Set<DicomM ap> hashSe t = new Ha shSet<Dico mMap>();
	1435
	1436	// feed s tatic tabl e for lega cy Study R oot Study level move (could be in M pers istence!!! !)
	1437	hash Set.add(ne w MockDico mMap("0008 ,0052", nu ll, "MoveR equest", " Level", 1) ); // DA - > String
	1438	hash Set.add(ne w MockDico mMap("0020 ,000D", nu ll, "MoveR equest", " InstanceUI D", 1)); / / UI -> St ring(64)
	1439
	1440	retu rn hashSet ;
	1441	}
	1442
	1443	privat e void san itizeHISCh anges(Hash Map<String , String> HISChanges ){
	1444	// 1. if (00 32,1064) i s present in HISchan ges and (0 008,1032) is present in the Da taSet,
	1445	// copy (003 2,1064) to (0008,103 2) in HIS Changes
	1446	if (HISChang es.contain sKey("0032 ,1064 0008 ,0100") && (this.dat aSet.conta insElement (DCM.E_PRO CEDURE_COD E_SEQUENCE ))) {
	1447	Stri ng value = (String)H ISChanges. get("0032, 1064 0008, 0100");
	1448	HISC hanges.put ("0008,103 2 0008,010 0", value) ;
	1449	valu e = (Strin g)HISChang es.get("00 32,1064 00 08,0102");
	1450	HISC hanges.put ("0008,103 2 0008,010 2", value) ;
	1451	valu e = (Strin g)HISChang es.get("00 32,1064 00 08,0104");
	1452	HISC hanges.put ("0008,103 2 0008,010 4", value) ;
	1453	}
	1454	}
	1455
	1456	privat e String f ormatStrin gValue(Str ing tag, S tring valu e){
	1457	St ring forma ttedValue = value;
	1458
	1459	tr y{
	1460	Attribut eTag dicom Tag = new AttributeT ag(tag);
	1461	short vr = DicomDa taDictiona ry.getElem entVR(dico mTag);
	1462	String v m = DicomD ataDiction ary.getEle mentVM(dic omTag);
	1463	if(value == null){
	1464	retu rn value;
	1465	}
	1466
	1467	if(vr == DicomData Dictionary .getVR("PN ")){
	1468	//Ch eck if ele ment allow s for mult iple value s.
	1469	if(v m.equals(" 1")){
	1470	//If only 1 value al lowed, str ip off eve rything el se.
	1471	String[] v alues = v alue.split ("\\\\", 2 );
	1472	formattedV alue = val ues[0];
	1473	}
	1474	else {
	1475	formattedV alue = val ue;
	1476	}
	1477	//Co nvert comm as to cara ts to meet DICOM sta ndard.
	1478	form attedValue = formatt edValue.re place(',', '^');
	1479	}
	1480	else{
	1481	form attedValue = value;
	1482	}
	1483	}
	1484	ca tch(DCSExc eption dcs e){
	1485	logger.w arn(this.g etClass(). getName()+ ": Warning thrown wh ile format ting Strin g Value.") ;
	1486	return v alue;
	1487	}
	1488	re turn forma ttedValue;
	1489	}
	1490
	1491	pr ivate Stri ng getStri ngValueFro mElement(S tring tagN ame, Strin g defaultV alue)
	1492	{
	1493	Stri ng value = "";
	1494	try
	1495	{
	1496	// Ext ract value s from DIC OM data se t
	1497	value = dataSet. getElement StringValu e(new Attr ibuteTag(t agName), d efaultValu e);
	1498	if ((v alue!=null ) && !valu e.isEmpty( ))
	1499	value = value.trim (); // tak e out lead ing and tr ailing whi tespaces
	1500	}
	1501	catc h (DCSExce ption dcse )
	1502	{
	1503	logger.w arn(dcse.g etMessage( )+ "; Defa ultValue ( " + ((defa ultValue== null)?"nul l":default Value) + " ) used.");
	1504	return d efaultValu e;
	1505	}
	1506
	1507	retu rn removeC ontrolChar acters(val ue);
	1508	}
	1509
	1510	// This code replaces the loop o ver each c har found in the ori ginal code ...
	1511	pr ivate Stri ng removeC ontrolChar acters(Str ing string ToClean)
	1512	{
	1513	Stri ng CONTROL _CHARACTER _REGEX = " \\p{Cntrl} ";
	1514
	1515	if ( stringToCl ean != nul l)
	1516	{
	1517	return stringToC lean.repla ceAll(CONT ROL_CHARAC TER_REGEX, "");
	1518	}
	1519	else
	1520	{
	1521	return null;
	1522	}
	1523	}
	1524
	1525	@O verride
	1526	pu blic boole an isRadia tionDoseSt ructuredRe port()
	1527	{
	1528	retu rn getSOPC lass().equ als(RADIAT ION_DOSE_S OP_CLASS_U ID);
	1529	}
	1530
	1531	@O verride
	1532	pu blic List< Dose> getD ose()
	1533	{
	1534	RDSR Processor processor = new RDSR Processor( this);
	1535
	1536	retu rn process or.getDose (this.getS OPInstance ());
	1537	}
	1538	}