25. EPMO Open Source Coordination Office Redaction File Detail Report

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25.1 Files compared

#	Location	File	Last Modified
1	rdk.zip\rdk\product\production\rdk\src\fhir\diagnostic-report	diagnostic-report-resource.js	Mon Aug 21 12:51:00 2017 UTC
2	rdk.zip\rdk\product\production\rdk\src\fhir\diagnostic-report	diagnostic-report-resource.js	Tue Oct 3 18:02:10 2017 UTC

25.2 Comparison summary

Description	Between Files 1 and 2
Description	Text Blocks	Lines
Unchanged	18	1604
Changed	17	34
Inserted	0	0
Removed	0	0

25.3 Comparison options

Whitespace
Character case	Differences in character case are significant
Line endings	Differences in line endings (`CR` and `LF` characters) are ignored
CR/LF characters	Not shown in the comparison detail

25.4 Active regular expressions

No regular expressions were active.

25.5 Comparison detail

	1	'use stric t';
	2	var rdk = require('. ./../core/ rdk');
	3	var nullch ecker = rd k.utils.nu llchecker;
	4	var _ = re quire('lod ash');
	5	var async = require( 'async');
	6	var labRes ults = req uire('./la b-result-r esource');
	7	var radRep orts = req uire('./ra diology-re port-resou rce');
	8	var fhirRe source = r equire('.. /common/en tities/fhi r-resource ');
	9	var errors = require ('../commo n/errors') ;
	10	var fhirTo JDSSearch = require( '../common /utils/fhi r-to-jds-s earch');
	11	var diagno sticReport SortUtils = require( './diagnos tic-report -sort-util s');
	12	var consta nts = requ ire('../co mmon/utils /constants ');
	13	var jds = require('. ./common/u tils/jds-q uery-helpe r');
	14	var confUt ils = requ ire('../co nformance/ conformanc e-utils');
	15	var confor mance = re quire('../ conformanc e/conforma nce-resour ce');
	16
	17	var fhirTo JDSAttrMap = [{
	18	fhirNa me: 'domai n', // Not e this att ribute is a app-defi ned search param, no t a Fhir s pecified a ttribute.
	19	vprNam e: '',
	20	dataTy pe: 'strin g',
	21	defini tion: 'htt p://www.hl 7.org/FHIR /2015May/d atatypes.h tml#string ',
	22	descri ption: 'Th is will sp ecify whic h types of Diagnosti c Reports to return. \'lab\' f or all typ es of labs (\'LAB\', \'CH\', \ 'MB\'), \ 'rad\' for all radio logy, \'ap \' for all types of accession (\'LAB\', \'OTH\', \ 'SP\', \'C P\', \'AP\ '). Usage example: domain=lab . Note: i f both dom ain and se rvice is s pecified, then servi ce will ta ke precede nt.' ,
	23	search able: true
	24	},{
	25	fhirNa me: 'servi ce', // No te this at tribute is a app-def ined searc h param, n ot a Fhir specified attribute.
	26	vprNam e: '',
	27	dataTy pe: 'strin g',
	28	defini tion: 'htt p://www.hl 7.org/FHIR /2015May/d atatypes.h tml#string ',
	29	descri ption: 'Th is will sp ecify whic h categori es of Diag nostic Rep orts to re turn. \'la b\', \'ch\ ', \'mb\', \'rad\', \'oth\', \ 'sp\', \'c p\', \'ap\ '. Usage e xample: se rvice=lab . Note: if both doma in and ser vice is sp ecified, t hen servic e will tak e preceden t.' ,
	30	search able: true
	31	},{
	32	fhirNa me: 'subje ct.identif ier', // N ote this a ttribute i s a app-de fined sear ch param, not a Fhir specified attribute .
	33	vprNam e: 'pid',
	34	dataTy pe: 'strin g',
	35	defini tion: 'htt p://www.hl 7.org/FHIR /2015May/d atatypes.h tml#string ',
	36	descri ption: 'Pa tient inde ntifier - note that this patie nt identif ier will o verride an y patient identifier that is i n the URI of this en dpoint.',
	37	search able: true
	38	},{
	39	fhirNa me: 'pid', // Note this attri bute is a app-define d search p aram, not a Fhir spe cified
	40	vprNam e: 'pid',
	41	dataTy pe: 'strin g',
	42	defini tion: 'htt p://www.hl 7.org/FHIR /2015May/d atatypes.h tml#string ',
	43	descri ption: 'Pa tient inde ntifier - note that this patie nt identif ier will o verride an y patient identifier that has been speci fied in th e URI of t his endpoi nt, as wel l as any s ubject.ide ntifier in the query string.',
	44	search able: true
	45	},{
	46	fhirNa me: 'date' ,
	47	vprNam e: 'observ ed',
	48	dataTy pe: 'dateT ime',
	49	defini tion: 'htt p://www.hl 7.org/FHIR /2015May/d atatypes.h tml#dateTi me',
	50	descri ption: 'Th is is the date/time the diagno stic was d one. The prefixes > , >=, <=, < and != m ay be used on the pa rameter va lue (e.g. date=>2015 -01-15). T he followi ng date fo rmats are permitted: yyyy-mm-d dThh:mm:ss (exact da te search) , yyyy-mm- dd (within given day ), yyyy-mm (within g iven month ), yyyy (w ithin give n year). A single da te paramet er can be used for a n exact da te search (e.g. date =2015-01-2 6T08:30:00 ) or an im plicit ran ge (e.g. d ate=2015-0 1, searche s all date s in Janua ry 2015). Two date p arameters can be use d to speci fy an expl icitly bou nded range . When usi ng a pair of date pa rameters, the parame ters shoul d bind bot h ends of the range. One shoul d have a l ess-than o perator (< , <=) whil e the othe r a greate r-than ope rator (>, >=).',
	51	search able: true
	52	},{
	53	fhirNa me: '_sort ',
	54	vprNam e: '',
	55	dataTy pe: 'strin g',
	56	defini tion: 'htt p://hl7.or g/FHIR/201 5May/datat ypes.html# string',
	57	descri ption: 'So rt criteri a. Ascendi ng order b y default, order is specified with the f ollowing v ariants: _sort:asc (ascending ), _sort:d esc (desce nding). Su pported so rt propert ies: date, identifie r, issued, performer , result, service, s pecimen, s tatus.',
	58	search able: true
	59	}];
	60	confUtils. addCountAt tribute(fh irToJDSAtt rMap); //a dding the _count att ribute tha t is commo n to (almo st) all en dpoints.
	61
	62
	63	// Issue c all to Con formance r egistratio n
	64	conformanc e.register (confUtils .domains.D IAGNOSTIC_ REPORT, cr eateConfor manceData( ));
	65
	66	function c reateConfo rmanceData () {
	67	var res ourceType = confUtil s.domains. DIAGNOSTIC _REPORT;
	68	var pro fileRefere nce = 'htt p://www.hl 7.org/FHIR /2015May/d iagnosticr eport.html ';
	69	var int eractions = [ 'read' , 'search- type' ];
	70
	71	return confUtils. createConf ormanceDat a(resource Type, prof ileReferen ce,
	72	interacti ons, fhirT oJDSAttrMa p);
	73	}
	74
	75	//TODO-FUT URE
	76	// As JSON .parse and JSON.stri ngify work in a bloc king manne r perhaps we should switch to a streamin g parser a s this one :
	77	// https:/ /github.co m/dominict arr/JSONSt ream
	78
	79	//The stop Aggregatin g flag is used in co njunction with the _ count para menter. I t is a sig nal to sto p bundling additiona l results while stil l incremen ting the r esult coun t total.
	80	var stopAg gregating;
	81	var fhirTo JDSSortMap = diagnos ticReportS ortUtils.g etFhirToJD SMap();
	82
	83	var domain s = {
	84	'lab': 'laborato ry',
	85	'rad': 'imaging' ,
	86	'ap': 'accession '
	87	};
	88
	89	var labCat egoryPrefi x = 'urn:v a:lab-cate gory:';
	90
	91	var labora toryServic eCategorie s = ['LAB' , 'CH', 'M B'];
	92	var imagin gServiceCa tegories = ['RAD'];
	93	var access ionService Categories = ['LAB', 'OTH', 'S P', 'CP', 'AP'];
	94
	95	function g etResource Config() {
	96	return [{
	97	na me: 'fhir- diagnostic -report',
	98	pa th: '',
	99	ge t: getDiag nosticRepo rts,
	100	su bsystems: ['patientr ecord', 'j ds', 'solr ', 'jdsSyn c', 'autho rization'] ,
	101	re quiredPerm issions: [ 'read-fhir '],
	102	is PatientCen tric: true ,
	103	in terceptors : {
	104	fhirPid: true,
	105	validate Pid: false
	106	},
	107	pe rmitRespon seFormat: true
	108	},{
	109	na me: 'fhir- diagnostic -report-se arch',
	110	pa th: '_sear ch',
	111	po st: getDia gnosticRep orts,
	112	su bsystems: ['patientr ecord', 'j ds', 'solr ', 'jdsSyn c', 'autho rization'] ,
	113	re quiredPerm issions: [ 'read-fhir '],
	114	is PatientCen tric: true ,
	115	in terceptors : {
	116	fhirPid: true,
	117	validate Pid: false
	118	},
	119	pe rmitRespon seFormat: true
	120	}];
	121	}
	122
	123	function v alidatePar ams(params , onSucces s, onError ) {
	124	stopAg gregating = false;
	125	// che ck common parameters
	126	fhirTo JDSSearch. validateCo mmonParams (params, f unction() {
	127	// validate date
	128	fh irToJDSSea rch.valida teDatePara ms(params, ['date'], function( ) {
	129	if (fhir ToJDSSearc h.isSortCr iteriaVali d(params, fhirToJDSS ortMap)) {
	130	onSu ccess();
	131	} else {
	132	onEr ror(['Unsu pported _s ort criter ia. Suppor ted attrib utes are: date, iden tifier, is sued, perf ormer, res ult, speci men and st atus']);
	133	}
	134	}, onError);
	135	}, onE rror);
	136	}
	137
	138	/**
	139	* @api {g et} /fhir/ patient/{i d}/diagnos ticreport Get Diagno stic Repor ts
	140	* @apiNam e getDiagn osticRepor t
	141	* @apiGro up Diagnos tic Report
	142	* @apiPar am {String } id The p atient id
	143	* @apiPar am {String } [domain] The domai n to filte r on. Cho ices inclu de: lab', rad, ap
	144	* @apiPar am {String } [service ] The diag nostic dis cipline/de partment w hich creat ed the rep ort
	145	* @apiPar am {Number } [_count] The numbe r of resul ts to show .
	146	* @apiPar am {String } [date] O btained da te/time. T he prefixe s >, >=, < =, < and ! = may be u sed on the parameter value (e. g. date=>2 015-01-15) . The foll owing date formats a re permitt ed: yyyy-m m-ddThh:mm :ss (exact date sear ch), yyyy- mm-dd (wit hin given day), yyyy -mm (withi n given mo nth), yyyy (within g iven year) . A single date para meter can be used fo r an exact date sear ch (e.g. d ate=2015-0 1-26T08:30 :00) or an implicit range (e.g . date=201 5-01, sear ches all d ates in Ja nuary 2015 ). Two dat e paramete rs can be used to sp ecify an e xplicitly bounded ra nge. When using a pa ir of date parameter s, the par ameters sh ould bind both ends of the ran ge. One sh ould have a less-tha n operator (<, <=) w hile the o ther a gre ater-than operator ( >, >=). Co nsult the <a href="h ttp://www. hl7.org/FH IR/2015May /search.ht ml#date">F HIR DSTU2 API</a> do cumentatio n for more informati on.
	147	* @apiPar am {String } [_sort] Sort crite ria. Ascen ding order by defaul t, order i s specifie d with the following variants: _sort:as c (ascendi ng), _sort :desc (des cending). Supported sort prope rties: dat e, identif ier, issue d, perform er, result , service, specimen, status.
	148	*
	149	* @apiDes cription C onverts vp r \'labrat ory,\' \'i maging\' a nd \'acces sion\' res ources int o a FHIR \ 'diagnosti creport\' resource.
	150	*
	151	* @apiExa mple {js} Request Ex amples:
	152	* // Diagnosti cReport li miting res ults count
	153	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?_count=1
	154	*
	155	* // Diagnosti cReport ex act date s earch
	156	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=201 5-01-26T13 :45:00
	157	*
	158	* // Diagnosti cReport on a day
	159	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=201 5-01-26
	160	*
	161	* // Diagnosti cReport on a month
	162	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=201 5-01
	163	*
	164	* // Diagnosti cReport on a year
	165	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=201 5
	166	*
	167	* // Diagnosti cReport ou tside a da te range ( e.g. Diagn osticRepor ts not occ uring on J anuary 201 5)
	168	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=!=2 015-01
	169	*
	170	* // Diagnosti cReport Ex plicit dat e range
	171	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?date=>=2 014-06&dat e=<=2014-0 9-20
	172	*
	173	* // Diagnosti cReport so rted by da te (sorts by Diagnos ticReport. appliesDat eTime)
	174	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?_sort=da te
	175	*
	176	* // Diagnosti cReport so rted by da te in desc ending ord er
	177	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?_sort:de sc=date
	178	*
	179	* // Diagnosti cReport so rted by pe rformer (s orts by Di agnosticRe port.perfo rmer.displ ay)
	180	* http:// IP /resource/ fhir/patie nt/ R E D A CTED ;253/diagn osticrepor t?_sort=pe rformer
	181	*
	182	* @apiSuc cess {json } data Jso n object c onforming to the <a href="http ://www.hl7 .org/FHIR/ 2015May/di agnosticre port.html" >Diagnosti cReport FH IR DTSU2 s pecificati on</a>.
	183	* @apiSuc cessExampl e Success- Response:
	184	* HTTP/1. 1 200 OK
	185	*{
	186	* "resou rceType": "Bundle",
	187	* "type" : "collect ion",
	188	* "id": "ccbd2fd7- 486a-41a8- f08e-ef53e 5a00689",
	189	* "link" : [
	190	* {
	191	* "r elation": "self",
	192	* "url": "ht tp://local host:8888/ resource/f hir/patien t/ R E D A CTED ;253/diagn osticrepor t?domain=l ab&_count= 1&date=201 0&_sort=da te"
	193	* }
	194	* ],
	195	* "total ": 18,
	196	* "entry ": [
	197	* {
	198	* "r esource": {
	199	* "resourceT ype": "Dia gnosticRep ort",
	200	* "name": {
	201	* "text": "POTASSIUM ",
	202	* "coding" : [
	203	* {
	204	* "sys tem": "urn :oid:2.16. 840.1.1138 83.6.233",
	205	* "cod e": "urn:v a:ien:60:1 77:72",
	206	* "dis play": "PO TASSIUM"
	207	* }
	208	* ]
	209	* },
	210	* "status": "final",
	211	* "issued": "2010-03-2 3T11:04:00 +08:00",
	212	* "subject": {
	213	* "reference ": "Patien t/ R E D A CTED ;253"
	214	* },
	215	* "performer ": {
	216	* "referen ce": "#737 894fd-760e -4ac4-b304 -1fbcfefd7 674",
	217	* "display ": "ALBANY VA MEDICA L CENTER"
	218	* },
	219	* "contained ": [
	220	* {
	221	* "resou rceType": "Organizat ion",
	222	* "id": "737894fd- 760e-4ac4- b304-1fbcf efd7674",
	223	* "ident ifier": [
	224	* {
	225	* "t ype": {
	226	* "text": "f acility-co de"
	227	* },
	228	* "v alue": "50 0"
	229	* }
	230	* ],
	231	* "name" : "ALBANY VA MEDICAL CENTER",
	232	* "addre ss": [
	233	* {
	234	* "t ext": "VA MEDICAL CE NTER 1 3RD sT. ALBAN Y, NY 1218 0-0097",
	235	* "s tate": "NY ",
	236	* "c ity": "ALB ANY",
	237	* "l ine": [
	238	* "ALBANY VA MEDICAL C ENTER",
	239	* "VA MEDICA L CENTER 1 3RD sT."
	240	* ],
	241	* "p ostalCode" : "12180-0 097"
	242	* }
	243	* ],
	244	* "text" : {
	245	* "sta tus": "gen erated",
	246	* "div ": "<div>A LBANY VA M EDICAL CEN TER<br/>VA MEDICAL C ENTER 1 3R D sT. ALBA NY, NY 121 80-0097</d iv>"
	247	* }
	248	* },
	249	* {
	250	* "resou rceType": "Specimen" ,
	251	* "id": "6ec1bec2- c167-41b3- e905-34267 c92dd3b",
	252	* "type" : {
	253	* "tex t": "SERUM "
	254	* },
	255	* "subje ct": {
	256	* "reference ": "Patien t/ R E D A CTED ;253"
	257	* },
	258	* "colle ction": {
	259	* "col lectedDate Time": "20 10-03-05T0 9:00:00+08 :00"
	260	* }
	261	* },
	262	* {
	263	* "resou rceType": "Observati on",
	264	* "id": "fd352966- 8eb4-4be3- dc4b-3849b 06c4152",
	265	* "code" : {
	266	* "tex t": "POTAS SIUM",
	267	* "cod ing": [
	268	* {
	269	* "system": "urn:oid:2 .16.840.1. 113883.6.2 33",
	270	* "code": "u rn:va:ien: 60:177:72" ,
	271	* "display": "POTASSIU M"
	272	* }
	273	* ]
	274	* },
	275	* "statu s": "final ",
	276	* "value Quantity": {
	277	* "val ue": 4.1,
	278	* "uni ts": "meq/ L"
	279	* },
	280	* "relia bility": " ok",
	281	* "speci men": {
	282	* "ref erence": " #6ec1bec2- c167-41b3- e905-34267 c92dd3b",
	283	* "dis play": "SE RUM"
	284	* },
	285	* "refer enceRange" : [
	286	* {
	287	* "h igh": {
	288	* "value": 5 .3,
	289	* "units": " meq/L"
	290	* },
	291	* "l ow": {
	292	* "value": 3 .8,
	293	* "units": " meq/L"
	294	* }
	295	* }
	296	* ]
	297	* }
	298	* ],
	299	* "identifie r": [
	300	* {
	301	* "syste m": "urn:o id:2.16.84 0.1.113883 .6.233",
	302	* "value": " urn:va:lab : R E D A CTED :253:CH;68 99693.9099 99;6"
	303	* }
	304	* ],
	305	* "serviceCa tegory": {
	306	* "text": "Chemistry ",
	307	* "coding" : [
	308	* {
	309	* "sys tem": "htt p://hl7.or g/fhir/v2/ 0074",
	310	* "cod e": "CH",
	311	* "dis play": "Ch emistry"
	312	* }
	313	* ]
	314	* },
	315	* "diagnosti cDateTime" : "2010-03 -05T09:00: 00+08:00",
	316	* "specimen" : [
	317	* {
	318	* "refer ence": "#6 ec1bec2-c1 67-41b3-e9 05-34267c9 2dd3b",
	319	* "displ ay": "SERU M"
	320	* }
	321	* ],
	322	* "extension ": [
	323	* {
	324	* "url": "http://v istacore.u s/fhir/ext ensions/la b#abnormal ",
	325	* "value Boolean": false
	326	* },
	327	* {
	328	* "url": "http://v istacore.u s/fhir/ext ensions/la b#category Code",
	329	* "value String": " urn:va:lab -category: CH"
	330	* },
	331	* {
	332	* "url": "http://v istacore.u s/fhir/ext ensions/la b#category Name",
	333	* "value String": " Laboratory "
	334	* },
	335	* {
	336	* "url": "http://v istacore.u s/fhir/ext ensions/la b#displayN ame",
	337	* "value String": " K"
	338	* },
	339	* {
	340	* "url": "http://v istacore.u s/fhir/ext ensions/la b#displayO rder",
	341	* "value Decimal": 1.2
	342	* },
	343	* {
	344	* "url": "http://v istacore.u s/fhir/ext ensions/la b#facility Code",
	345	* "value String": " 500"
	346	* },
	347	* {
	348	* "url": "http://v istacore.u s/fhir/ext ensions/la b#groupNam e",
	349	* "value String": " CH 0323 42 5"
	350	* },
	351	* {
	352	* "url": "http://v istacore.u s/fhir/ext ensions/la b#groupUid ",
	353	* "valueStri ng": "urn: va:accessi on: R E D A CTED :253:CH;68 99693.9099 99"
	354	* },
	355	* {
	356	* "url": "http://v istacore.u s/fhir/ext ensions/la b#high",
	357	* "value String": " 5.3"
	358	* },
	359	* {
	360	* "url": "http://v istacore.u s/fhir/ext ensions/la b#kind",
	361	* "value String": " Laboratory "
	362	* },
	363	* {
	364	* "url": "http://v istacore.u s/fhir/ext ensions/la b#localId" ,
	365	* "value String": " CH;6899693 .909999;6"
	366	* },
	367	* {
	368	* "url": "http://v istacore.u s/fhir/ext ensions/la b#micro",
	369	* "value Boolean": false
	370	* },
	371	* {
	372	* "url": "http://v istacore.u s/fhir/ext ensions/la b#pid",
	373	* "valueStri ng": " R E D A CTED ;253"
	374	* },
	375	* {
	376	* "url": "http://v istacore.u s/fhir/ext ensions/la b#qualifie dName",
	377	* "value String": " POTASSIUM (SERUM)"
	378	* },
	379	* {
	380	* "url": "http://v istacore.u s/fhir/ext ensions/la b#result",
	381	* "value String": " 4.1"
	382	* },
	383	* {
	384	* "url": "http://v istacore.u s/fhir/ext ensions/la b#specimen ",
	385	* "value String": " SERUM"
	386	* },
	387	* {
	388	* "url": "http://v istacore.u s/fhir/ext ensions/la b#stampTim e",
	389	* "value String": " 2010032311 0400"
	390	* },
	391	* {
	392	* "url": "http://v istacore.u s/fhir/ext ensions/la b#statusCo de",
	393	* "value String": " urn:va:lab -status:co mpleted"
	394	* },
	395	* {
	396	* "url": "http://v istacore.u s/fhir/ext ensions/la b#summary" ,
	397	* "value String": " POTASSIUM (SERUM) 4. 1 meq/L"
	398	* },
	399	* {
	400	* "url": "http://v istacore.u s/fhir/ext ensions/la b#typeId",
	401	* "value Integer": 177
	402	* },
	403	* {
	404	* "url": "http://v istacore.u s/fhir/ext ensions/la b#units",
	405	* "value String": " meq/L"
	406	* },
	407	* {
	408	* "url": "http://v istacore.u s/fhir/ext ensions/la b#lastUpda teTime",
	409	* "value String": " 2010032311 0400"
	410	* },
	411	* {
	412	* "url": "http://v istacore.u s/fhir/ext ensions/la b#low",
	413	* "value String": " 3.8"
	414	* },
	415	* {
	416	* "url": "http://v istacore.u s/fhir/ext ensions/la b#lnccodes [0]",
	417	* "value String": " urn:va:ien :60:177:72 "
	418	* }
	419	* ],
	420	* "result": [
	421	* {
	422	* "refer ence": "#f d352966-8e b4-4be3-dc 4b-3849b06 c4152",
	423	* "displ ay": "POTA SSIUM"
	424	* }
	425	* ],
	426	* "text": {
	427	* "status" : "generat ed",
	428	* "div": "<d iv>Collect ed: 2010-0 3-05T09:00 :00<br/>Re port Relea sed: 2010- 03-23T11:0 4:00<br/>A ccession: urn:va:acc ession: R E D A CTED :253:CH;68 99693.9099 99<br/>Tes t: POTASSI UM<br/>Res ult: 4.1 m eq/L<br/>L ow: 3.8 me q/L<br/>Hi gh: 5.3 me q/L<br/>Sp ecimen: SE RUM<br/>Pe rforming L ab: ALBANY VA MEDICA L CENTER<b r/>\t\tund efined<br/ >\t\tundef ined<br/>< /div>"
	429	* }
	430	* }
	431	* }
	432	* ]
	433	*}
	434	*
	435	* @apiErr or (Error 400) Inval id paramet er values.
	436	* @apiErr orExample Error-Resp onse:
	437	* HTTP/1. 1 400 Bad Request
	438	* {
	439	* In valid para meter valu es.
	440	* }
	441	*/
	442	function g etDiagnost icReports( req, res) {
	443	var pi d = req.qu ery.pid;
	444	if (nu llchecker. isNullish( pid)) {
	445	re turn res.s tatus(rdk. httpstatus .bad_forma t).send('M issing req uired para meter: pid ');
	446	}
	447	//lab & radiolog y are expe cting this value in _pid, assi gn it here as a safe ty check
	448	req._p id = pid;
	449
	450	var do main = req .param('do main');
	451	var se rvice = re q.param('s ervice');
	452	var se rviceCateg ories = [] ;
	453	var pa rams = req .query;
	454	if (nu llchecker. isNullish( service)) {
	455	if (nullchec ker.isNotN ullish(dom ain)) {
	456	serviceC ategories. push(domai n.toUpperC ase());
	457	} else {
	458	serviceC ategories = serviceC ategories. concat(lab oratorySer viceCatego ries);
	459	serviceC ategories = serviceC ategories. concat(ima gingServic eCategorie s);
	460	serviceC ategories = serviceC ategories. concat(acc essionServ iceCategor ies);
	461	}
	462	} else {
	463	se rviceCateg ories = se rviceCateg ories.conc at(service .toUpperCa se().split (','));
	464	}
	465
	466	valida teParams(p arams, fun ction() {
	467	ge tDiagnosti cReportsIm pl(pid, re q, res, pa rams, serv iceCategor ies);
	468	}, fun ction(erro rs) {
	469	re turn res.s tatus(rdk. httpstatus .bad_reque st).send(' Invalid pa rameters:' + fhirToJ DSSearch.v alidationE rrorsToStr ing(errors ));
	470	});
	471	}
	472
	473	function g etDiagnost icReportsI mpl(pid, r eq, res, p arams, ser viceCatego ries) {
	474	var co unt = req. param('_co unt');
	475
	476	var as yncTasks = [];
	477	asyncT asks.push( function(c allback) {
	478	ca llback(nul l, {
	479	results: [],
	480	totalIte ms: 0
	481	}) ;
	482	});
	483
	484	// lab oratory
	485	if (nu llchecker. isNullish( serviceCat egories) \| \| (nullche cker.isNot Nullish(se rviceCateg ories) && _.intersec tion(labor atoryServi ceCategori es, servic eCategorie s).length > 0)) {
	486	va r labCateg oryCodes = [];
	487	va r intersec tionLabora tory = [];
	488	if (nullchec ker.isNotN ullish(ser viceCatego ries)) {
	489	intersec tionLabora tory = _.i ntersectio n(laborato ryServiceC ategories, serviceCa tegories);
	490	}
	491	if (!_.conta ins(inters ectionLabo ratory, 'L AB')) {
	492	for (var labCC in labResults .categoryM ap) {
	493	if ( _.contains (intersect ionLaborat ory, labRe sults.cate goryMap[la bCC].code) ) {
	494	labCategor yCodes.pus h(labCateg oryPrefix + labCC);
	495	}
	496	}
	497	}
	498	as yncTasks.p ush(functi on(accumul ator, call back) {
	499	var limi tRemainder = count;
	500	if (null checker.is NotNullish (count) && accumulat or && accu mulator.re sults && a ccumulator .results.l ength) {
	501	limi tRemainder -= accumu lator.resu lts.length ;
	502	}
	503	if (limi tRemainder === 0) {
	504	stop Aggregatin g = true;
	505	}
	506	getVprDa ta(pid, re q, domains .lab, labC ategoryCod es, limitR emainder, params, fu nction(err , inputJSO N) {
	507	var error = nu ll;
	508	var result = n ull;
	509
	510	if ( err instan ceof error s.ParamErr or) {
	511	error = {
	512	code: rdk.httpst atus.bad_r equest,
	513	messag e: err.mes sage
	514	};
	515	} el se if (err instanceo f errors.N otFoundErr or) {
	516	error = {
	517	code: rdk.httpst atus.not_f ound,
	518	messag e: err.err or
	519	};
	520	} el se if (err instanceo f errors.F etchError) {
	521	req.logger .error(err .message);
	522	error = {
	523	code: rdk.httpst atus.inter nal_server _error,
	524	messag e: 'There was an err or process ing your r equest. Th e error ha s been log ged.'
	525	};
	526	} el se if (err ) {
	527	error = {
	528	code: rdk.httpst atus.inter nal_server _error,
	529	messag e: err.mes sage
	530	};
	531	} el se {
	532	result = l abResults. convertToF hir(inputJ SON, req);
	533	if (!stopA ggregating ) {
	534	accumu lator.resu lts = accu mulator.re sults.conc at(result) ;
	535	}
	536	accumulato r.totalIte ms += inpu tJSON.data .totalItem s;
	537	}
	538
	539	call back(error , accumula tor); //ca ll final c allback
	540
	541	});
	542	}) ;
	543	}
	544	// acc ession
	545	if (nu llchecker. isNullish( serviceCat egories) \| \| (nullche cker.isNot Nullish(se rviceCateg ories) && _.intersec tion(acces sionServic eCategorie s, service Categories ).length > 0)) {
	546	va r apCatego ryCodes = [];
	547	va r intersec tionAccess ion = [];
	548	if (nullchec ker.isNotN ullish(ser viceCatego ries)) {
	549	intersec tionAccess ion = _.in tersection (accession ServiceCat egories, s erviceCate gories);
	550	}
	551	if (_.inters ection(int ersectionA ccession, ['LAB', 'A P']).lengt h === 0) {
	552	for (var apCC in l abResults. categoryMa p) {
	553	if ( _.contains (intersect ionAccessi on, labRes ults.categ oryMap[apC C].code)) {
	554	apCategory Codes.push (labCatego ryPrefix + apCC);
	555	}
	556	}
	557	}
	558	as yncTasks.p ush(functi on(accumul ator, call back) {
	559	var limi tRemainder = count;
	560	if (null checker.is NotNullish (count) && accumulat or && accu mulator.re sults && a ccumulator .results.l ength) {
	561	limi tRemainder -= accumu lator.resu lts.length ;
	562	}
	563	if (limi tRemainder === 0) {
	564	stop Aggregatin g = true;
	565	}
	566	getVprDa ta(pid, re q, domains .ap, apCat egoryCodes , limitRem ainder, pa rams, func tion(err, inputJSON) {
	567	var error = nu ll;
	568	var result = n ull;
	569
	570	if ( err instan ceof error s.ParamErr or) {
	571	error = {
	572	code: rdk.httpst atus.bad_r equest,
	573	messag e: err.mes sage
	574	};
	575	} el se if (err instanceo f errors.N otFoundErr or) {
	576	error = {
	577	code: rdk.httpst atus.not_f ound,
	578	messag e: err.err or
	579	};
	580	} el se if (err instanceo f errors.F etchError) {
	581	req.logger .error(err .message);
	582	error = {
	583	code: rdk.httpst atus.inter nal_server _error,
	584	messag e: 'There was an err or process ing your r equest. Th e error ha s been log ged.'
	585	};
	586	} el se if (err ) {
	587	error = {
	588	code: rdk.httpst atus.inter nal_server _error,
	589	messag e: err.mes sage
	590	};
	591	} el se {
	592	result = l abResults. convertToF hir(inputJ SON, req);
	593	if (!stopA ggregating ) {
	594	accumu lator.resu lts = accu mulator.re sults.conc at(result) ;
	595	}
	596	accumulato r.totalIte ms += inpu tJSON.data .totalItem s;
	597	}
	598
	599	call back(error , accumula tor); //ca ll final c allback
	600
	601	});
	602	}) ;
	603	}
	604	// ima ging
	605	if (nu llchecker. isNullish( serviceCat egories) \| \| (nullche cker.isNot Nullish(se rviceCateg ories) && _.intersec tion(imagi ngServiceC ategories, serviceCa tegories). length > 0 )) {
	606	va r radCateg oryCodes = [];
	607	as yncTasks.p ush(functi on(accumul ator, call back) {
	608	var limi tRemainder = count;
	609	if (null checker.is NotNullish (count) && accumulat or && accu mulator.re sults && a ccumulator .results.l ength) {
	610	limi tRemainder -= accumu lator.resu lts.length ;
	611	}
	612	if (limi tRemainder === 0) {
	613	stop Aggregatin g = true;
	614	}
	615	getVprDa ta(pid, re q, domains .rad, radC ategoryCod es, limitR emainder, params, fu nction(err , inputJSO N) {
	616	var error = nu ll;
	617	var result = n ull;
	618
	619	if ( err instan ceof error s.ParamErr or) {
	620	error = {
	621	code: rdk.httpst atus.bad_r equest,
	622	messag e: err.mes sage
	623	};
	624	} el se if (err instanceo f errors.N otFoundErr or) {
	625	error = {
	626	code: rdk.httpst atus.not_f ound,
	627	messag e: err.err or
	628	};
	629	} el se if (err instanceo f errors.F etchError) {
	630	req.logger .error(err .message);
	631	error = {
	632	code: rdk.httpst atus.inter nal_server _error,
	633	messag e: 'There was an err or process ing your r equest. Th e error ha s been log ged.'
	634	};
	635	} el se if (err ) {
	636	error = {
	637	code: rdk.httpst atus.inter nal_server _error,
	638	messag e: err.mes sage
	639	};
	640	} el se {
	641	result = r adReports. convertToF hir(inputJ SON, req);
	642	if (!stopA ggregating ) {
	643	accumu lator.resu lts = accu mulator.re sults.conc at(result) ;
	644	}
	645	accumulato r.totalIte ms += inpu tJSON.data .totalItem s;
	646	}
	647
	648	call back(error , accumula tor); //ca ll final c allback
	649
	650	});
	651	}) ;
	652	}
	653
	654	async. waterfall( asyncTasks , function (err, accu mulator) { //final c allback
	655	if (nullchec ker.isNotN ullish(err )) {
	656	res.stat us(err.cod e \|\| 500). send(err.m essage);
	657	} else {
	658	var bund le = build Bundle(acc umulator.r esults, re q, accumul ator.total Items);
	659	res.stat us(200).se nd(bundle) ;
	660	}
	661	});
	662	}
	663
	664	function b uildBundle (results, req, total ) {
	665	var en try = [];
	666	var li nk = [];
	667
	668	if (re q) {
	669	li nk.push(ne w fhirReso urce.Link( req.protoc ol + '://' + req.hea ders.host + req.orig inalUrl, ' self'));
	670	}
	671	for (v ar i = 0; i < result s.length; i++) {
	672	if (nullchec ker.isNotN ullish(res ults[i])) {
	673	var e = new fhirRe source.Ent ry(results [i]);
	674	// This IS on the DSTU2 spec but the H API valida tion tool complains about it. We're not adding any meaninful
	675	// infor mation on the link s o it is sa fe to be c ommented o ut for the moment.
	676	//e.link = [new fh irResource .Link(req. protocol + '://' + r eq.headers .host + '/ fhir/diagn osticrepor t/' + (e.r esource._i d \|\| e.res ource.id \| \| '@null') , 'self')] ;
	677	entry.pu sh(e);
	678	}
	679	}
	680
	681	//Diag nosticRepo rt is an a ggregate o f multiple reports, its result s must be sorted aft er all VPR calls
	682	entry = diagnost icReportSo rtUtils.so rtEntries( req, entry );
	683	return (new fhir Resource.B undle(link , entry, t otal));
	684	}
	685
	686	/**
	687	* Builds the corres ponding JD S query fo r the FHIR Diagnosti cReport.na me search token quer y.
	688	*
	689	* The nam e query is of type t oken. It s upports a comma deli mited list of code t oken queri es. Each
	690	* token c an include a code or a system AND code q uery separ ated by a '\|'.
	691	*
	692	* Ex. na me=myCode, anotherCod e,mySystem \|myOtherCo de,...
	693	*/
	694	function b uildNameCo deQuery(na me) {
	695	var qu eries = [] ;
	696	// FHI R supports escaped c ommas (\,) . We repla ce non-esc aped comma s with a
	697	// unu sed unicod e characte r to perfo rm the spl it .
	698	var to kens = nam e.replace( /([^\\]),/ g, '$1\u00 0B').split ('\u000B') ;
	699
	700	_.forE ach(tokens , function (token) {
	701	// unescape any commas
	702	to ken = toke n.replace( /\\,/g, ', ');
	703	va r code;
	704	va r system;
	705	va r codeSyst emSplit = token.spli t('\|');
	706
	707	if (codeSyst emSplit.le ngth > 1) {
	708	system = codeSyste mSplit[0];
	709	code = c odeSystemS plit[1];
	710
	711	} else {
	712	code = c odeSystemS plit[0];
	713	}
	714
	715	if (nullchec ker.isNotN ullish(sys tem)) {
	716	// Sy stem & Cod e
	717
	718	// LAB_R ESULTS_UID _IDENTIFIE R_SYSTEM a nd VHA_SYS TEM hold c urrently t he same va lue
	719	// but t hat doesn' t have to be always the case. We don't u se if-else if for tha t reason.
	720	if (syst em === con stants.lab ResultsFhi r.LAB_RESU LTS_UID_ID ENTIFIER_S YSTEM \|\| s ystem === constants. labResults Fhir.VHA_S YSTEM) {
	721	// L AB_RESULTS _UID_IDENT IFIER_SYST EM does no t exist in VPR, FHIR mapping a ssociates the code w ith VPR re cord's vui d
	722	quer ies.push(j ds.eq('vui d', '\"' + code + '\ "'));
	723	// V HA_SYSTEM does not e xist in VP R, FHIR ma pping asso ciates the code with VPR recor d's typeCo de
	724	quer ies.push(j ds.eq('typ eCode', '\ "' + code + '\"'));
	725	// F HIR mappin g associat es the dis play value for these systems t o VPR reco rd's typeN ame
	726	quer ies.push(j ds.eq('typ eName', '\ "' + code + '\"'));
	727	} else {
	728	// a ll other s ystem\|code query com binations can only b e mapped t o the VPR codes arra y
	729	quer ies.push(j ds.and(jds .eq('\"cod es[].syste m\"', syst em), jds.o r(jds.eq(' \"codes[]. code\"', ' \"' + code + '\"'), jds.eq('\" codes[].di splay\"', '\"' + cod e + '\"')) ));
	730	}
	731	} else if (c ode === co nstants.la bResultsFh ir.PATHOLO GY_REPORT_ NAME) {
	732	// LR ANATOMIC PATHOLOGY REPORT
	733	// FHIR mapping se ts this na me for ite ms with ca tegoryCode that ends with AP, so if sear ching for this strin g
	734	// we sh ould searc h for item s with cat egoryCode that ends in AP.
	735	queries. push(jds.l ike('categ oryCode', '%AP'));
	736	} else {
	737	// Co de
	738	var sear chProps = ['typeName ', 'typeCo de', '\"re sults[].lo calTitle\" ', 'vuid', '\"codes[ ].code\"', '\"codes[ ].display\ "'];
	739	var code Queries = _.map(sear chProps, f unction(pr op) {
	740	retu rn jds.eq( prop, '\"' + code + '\"');
	741	});
	742	queries. push(jds.o r(codeQuer ies));
	743	}
	744	});
	745	// com bine all t oken queri es into OR expressio ns
	746	return jds.or(qu eries);
	747	}
	748
	749	function b uildSearch Query(para ms, catego ryCodes) {
	750	var qu ery = [];
	751	var da teQuery;
	752	var na meQuery;
	753
	754	// cat egories
	755	if (!_ .isEmpty(c ategoryCod es)) {
	756	qu ery.push(' in(categor yCode,[' + categoryC odes.join( ',') + ']) ');
	757	}
	758	// nam e (system & code)
	759	if (nu llchecker. isNotNulli sh(params. name)) {
	760	na meQuery = buildNameC odeQuery(p arams.name );
	761	if (nameQuer y) {
	762	query.pu sh(nameQue ry);
	763	}
	764	}
	765	// dat e
	766	if (nu llchecker. isNotNulli sh(params. date)) {
	767	da teQuery = fhirToJDSS earch.buil dDateQuery (params.da te, 'obser ved');
	768	if (dateQuer y) {
	769	query.pu sh(dateQue ry);
	770	}
	771	}
	772	return fhirToJDS Search.bui ldSearchQu eryString( query);
	773	}
	774
	775	function b uildJDSPat h(pid, par ams, domai n, categor yCodes) {
	776	var ba sePath = ' /vpr/' + p id + '/ind ex/' + dom ain;
	777	var se archQuery = buildSea rchQuery(p arams, cat egoryCodes );
	778	return fhirToJDS Search.bui ldJDSPath( basePath, searchQuer y, params, fhirToJDS SortMap);
	779	}
	780
	781	function g etVprData( pid, req, domain, ca tegoryCode s, count, params, ca llback) {
	782
	783	var co nfig = req .app.confi g;
	784
	785	if (nu llchecker. isNullish( pid)) {
	786	re turn callb ack(new er rors.Param Error('sub ject.ident ifier'));
	787	}
	788
	789	var jd sPath = bu ildJDSPath (pid, para ms, domain , category Codes);
	790	var op tions = _. extend({}, config.jd sServer, {
	791	ur l: jdsPath ,
	792	lo gger: req. logger,
	793	js on: true
	794	});
	795
	796	rdk.ut ils.http.g et(options , function (error, re sponse, ob j) {
	797	re q.logger.d ebug('call back from fetch()');
	798	if (error) {
	799	return c allback(ne w errors.F etchError( 'Error fet ching pid= ' + pid + ' - ' + (e rror.messa ge \|\| erro r), error) );
	800	}
	801	if ('data' i n obj) {
	802	return c allback(nu ll, obj);
	803	}
	804	if ('error' in obj) {
	805	if (erro rs.isNotFo und(obj)) {
	806	retu rn callbac k(new erro rs.NotFoun dError('Ob ject not f ound', obj ));
	807	}
	808	return c allback(ne w errors.F etchError( 'There was an error processing your requ est. The e rror has b een logged .', obj.er ror));
	809	}
	810	re turn callb ack(new er rors.Fetch Error('The re was an error proc essing you r request. The error has been logged.')) ;
	811	});
	812	}
	813
	814	module.exp orts.getRe sourceConf ig = getRe sourceConf ig;
	815	module.exp orts.build Bundle = b uildBundle ;
	816	module.exp orts.valid ateParams = validate Params;
	817	module.exp orts.build JDSPath = buildJDSPa th;
	818	module.exp orts.creat eConforman ceData = c reateConfo rmanceData ;
	819